Date: Fri, 27 Jun 2014 14:14:01 +0000 (UTC) From: Martin Wilke <miwi@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r359532 - head/biology/mummer Message-ID: <201406271414.s5REE11t005938@svn.freebsd.org>
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Author: miwi Date: Fri Jun 27 14:14:01 2014 New Revision: 359532 URL: http://svnweb.freebsd.org/changeset/ports/359532 QAT: https://qat.redports.org/buildarchive/r359532/ Log: Fix compilation on 10+ (clang) Fix format of WWW entry in pkg-descr PR: 190798 Modified: head/biology/mummer/Makefile head/biology/mummer/pkg-descr Modified: head/biology/mummer/Makefile ============================================================================== --- head/biology/mummer/Makefile Fri Jun 27 14:12:23 2014 (r359531) +++ head/biology/mummer/Makefile Fri Jun 27 14:14:01 2014 (r359532) @@ -3,6 +3,7 @@ PORTNAME= mummer PORTVERSION= 3.23 +PORTREVISION= 1 CATEGORIES= biology MASTER_SITES= SF DISTNAME= MUMmer${PORTVERSION} @@ -10,7 +11,7 @@ DISTNAME= MUMmer${PORTVERSION} MAINTAINER= ports@FreeBSD.org COMMENT= Modular system for rapid whole genome alignment -USES= gmake +USES= gmake perl5 PROGRAMS= annotate combineMUMs delta-filter gaps \ mgaps mummer repeat-match show-aligns \ @@ -23,6 +24,13 @@ OPTIONS_DEFINE= DOCS .include <bsd.port.options.mk> +post-extract: + @${REINPLACE_CMD} -e 's,type perl,type ${LOCALBASE}/bin/perl,' ${WRKSRC}/scripts/Makefile +.if (${OSVERSION} >= 1000024) + @${REINPLACE_CMD} -e 's,type gcc,type clang,' ${WRKSRC}/Makefile + @${REINPLACE_CMD} -e 's,type g++,type clang++,' ${WRKSRC}/Makefile +.endif + do-install: ${INSTALL_PROGRAM} ${PROGRAMS:S|^|${WRKSRC}/|} ${STAGEDIR}${PREFIX}/bin ${INSTALL_SCRIPT} ${SCRIPTS:S|^|${WRKSRC}/|} ${STAGEDIR}${PREFIX}/bin Modified: head/biology/mummer/pkg-descr ============================================================================== --- head/biology/mummer/pkg-descr Fri Jun 27 14:12:23 2014 (r359531) +++ head/biology/mummer/pkg-descr Fri Jun 27 14:14:01 2014 (r359532) @@ -3,4 +3,4 @@ or draft sequence. This package provides seed-and-extend alignment, SNP detection, repeat detection, and visualization tools. -WWW: http://mummer.sourceforge.net/ +WWW: http://mummer.sourceforge.net/
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