Date: Thu, 9 Nov 2017 02:35:31 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 110armv6-quarterly][biology/phyml] Failed for phyml-3.3.20170530, 1 in build Message-ID: <201711090235.vA92ZVAo010728@beefy15.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Last committer: sunpoet@FreeBSD.org Ident: $FreeBSD: branches/2017Q4/biology/phyml/Makefile 449234 2017-09-04 00:01:36Z sunpoet $ Log URL: http://beefy15.nyi.freebsd.org/data/110armv6-quarterly/453786/logs/phyml-3.3.20170530,1.log Build URL: http://beefy15.nyi.freebsd.org/build.html?mastername=110armv6-quarterly&build=453786 Log: ====>> Building biology/phyml build started at Thu Nov 9 02:34:33 UTC 2017 port directory: /usr/ports/biology/phyml building for: FreeBSD 110armv6-quarterly-job-05 11.0-RELEASE-p14 FreeBSD 11.0-RELEASE-p14 1100122 arm maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: branches/2017Q4/biology/phyml/Makefile 449234 2017-09-04 00:01:36Z sunpoet $ Poudriere version: 3.1.22 Host OSVERSION: 1200050 Jail OSVERSION: 1100122 Job Id: 05 ---Begin Environment--- POUDRIEREPATH=/usr/local/bin/poudriere LOCALBASE=/usr/local LIBEXECPREFIX=/usr/local/libexec/poudriere SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIERE_VERSION=3.1.22 HOME=/root USER=root SCRIPTPREFIX=/usr/local/share/poudriere MASTERNAME=110armv6-quarterly PWD=/usr/local/poudriere/data/.m/110armv6-quarterly/ref/.p/pool OLDPWD=/ PKGNAME=phyml-3.3.20170530,1 POUDRIERE_BUILD_TYPE=bulk PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin QEMU_EMULATING=1 MASTERMNT=/usr/local/poudriere/data/.m/110armv6-quarterly/ref SAVED_TERM= STATUS=1 MAIL=/var/mail/root BLOCKSIZE=K UNAME_r=11.0-RELEASE-p14 UNAME_v=FreeBSD 11.0-RELEASE-p14 1100122 OSVERSION=1100122 ABI_FILE=/usr/lib/crt1.o UNAME_m=arm UNAME_p=armv6 SHELL=/bin/csh ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for phyml-3.3.20170530,1: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ====> MPI (Message Passing Interface) support: you can only select none or one of them MPICH2=off: Parallel processing support via MPICH2 OPENMPI=off: Parallel processing support via Open MPI ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --disable-beagle --disable-mpi --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/phyml/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/phyml/work HOME=/wrkdirs/usr/ports/biology/phyml/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/phyml/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/phyml/work HOME=/wrkdirs/usr/ports/biology/phyml/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/phyml" EXAMPLESDIR="share/examples/phyml" DATADIR="share/phyml" WWWDIR="www/phyml" ETCDIR="etc/phyml" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/phyml DOCSDIR=/usr/local/share/doc/phyml EXAMPLESDIR=/usr/local/share/examples/phyml WWWDIR=/usr/local/www/phyml ETCDIR=/usr/local/etc/phyml --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=armv6 CONFIGURE_MAX_CMD_LEN=262144 OPSYS=FreeBSD OSREL=11.0 OSVERSION=1100122 PYTHONBASE=/usr/local UID=0 _JAVA_OS_LIST_REGEXP=native|linux _JAVA_VENDOR_LIST_REGEXP=openjdk|oracle|sun _JAVA_VERSION_LIST_REGEXP=1.6|1.7|1.8|1.6\+|1.7\+|1.8\+ _OSRELEASE=11.0-RELEASE-p14 #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> NOTICE: The phyml port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> phyml-3.3.20170530,1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.1.txz [110armv6-quarterly-job-05] Installing pkg-1.10.1... [110armv6-quarterly-job-05] Extracting pkg-1.10.1: .......... done ===> phyml-3.3.20170530,1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of phyml-3.3.20170530,1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> NOTICE: The phyml port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by phyml-3.3.20170530,1 for building =========================================================================== =======================<phase: checksum >============================ ===> NOTICE: The phyml port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by phyml-3.3.20170530,1 for building => SHA256 Checksum OK for stephaneguindon-phyml-v3.3.20170530_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> NOTICE: The phyml port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by phyml-3.3.20170530,1 for building ===> Extracting for phyml-3.3.20170530,1 => SHA256 Checksum OK for stephaneguindon-phyml-v3.3.20170530_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for phyml-3.3.20170530,1 =========================================================================== =======================<phase: build-depends >============================ ===> phyml-3.3.20170530,1 depends on executable: autoconf-2.69 - not found ===> Installing existing package /packages/All/autoconf-2.69_1.txz [110armv6-quarterly-job-05] Installing autoconf-2.69_1... [110armv6-quarterly-job-05] `-- Installing autoconf-wrapper-20131203... [110armv6-quarterly-job-05] `-- Extracting autoconf-wrapper-20131203: ........ done [110armv6-quarterly-job-05] `-- Installing indexinfo-0.2.6... [110armv6-quarterly-job-05] `-- Extracting indexinfo-0.2.6: .... done [110armv6-quarterly-job-05] `-- Installing m4-1.4.18,1... [110armv6-quarterly-job-05] `-- Extracting m4-1.4.18,1: .......... done [110armv6-quarterly-job-05] `-- Installing perl5-5.24.3... [110armv6-quarterly-job-05] `-- Extracting perl5-5.24.3: .......... done [110armv6-quarterly-job-05] Extracting autoconf-2.69_1: .......... done Message from perl5-5.24.3: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> phyml-3.3.20170530,1 depends on executable: autoconf-2.69 - found ===> Returning to build of phyml-3.3.20170530,1 ===> phyml-3.3.20170530,1 depends on executable: autoheader-2.69 - found ===> phyml-3.3.20170530,1 depends on executable: autoreconf-2.69 - found ===> phyml-3.3.20170530,1 depends on executable: aclocal-1.15 - not found ===> Installing existing package /packages/All/automake-1.15.1.txz [110armv6-quarterly-job-05] Installing automake-1.15.1... [110armv6-quarterly-job-05] `-- Installing automake-wrapper-20131203... [110armv6-quarterly-job-05] `-- Extracting automake-wrapper-20131203: ... done [110armv6-quarterly-job-05] Extracting automake-1.15.1: .......... done ===> phyml-3.3.20170530,1 depends on executable: aclocal-1.15 - found ===> Returning to build of phyml-3.3.20170530,1 ===> phyml-3.3.20170530,1 depends on executable: automake-1.15 - found ===> phyml-3.3.20170530,1 depends on executable: libtoolize - not found ===> Installing existing package /packages/All/libtool-2.4.6.txz [110armv6-quarterly-job-05] Installing libtool-2.4.6... [110armv6-quarterly-job-05] Extracting libtool-2.4.6: .......... done ===> phyml-3.3.20170530,1 depends on executable: libtoolize - found ===> Returning to build of phyml-3.3.20170530,1 ===> phyml-3.3.20170530,1 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-1.3.7,1.txz [110armv6-quarterly-job-05] Installing pkgconf-1.3.7,1... [110armv6-quarterly-job-05] Extracting pkgconf-1.3.7,1: .......... done ===> phyml-3.3.20170530,1 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of phyml-3.3.20170530,1 =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for phyml-3.3.20170530,1 aclocal-1.15: warning: couldn't open directory 'm4': No such file or directory configure: loading site script /usr/ports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking build system type... armv6-portbld-freebsd11.0 checking host system type... armv6-portbld-freebsd11.0 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /nxb-bin/usr/bin/cc accepts -g... yes checking for /nxb-bin/usr/bin/cc option to accept ISO C89... none needed checking whether /nxb-bin/usr/bin/cc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of /nxb-bin/usr/bin/cc... gcc3 checking dependency style of /nxb-bin/usr/bin/cc... (cached) gcc3 checking for log in -lm... yes checking how to run the C preprocessor... /nxb-bin/usr/bin/cpp checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for float.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... (cached) yes checking for pdflatex... no checking for latex... no configure: WARNING: Documentation will not be built! checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for vprintf... (cached) yes checking for _doprnt... no checking for floor... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for strchr... yes checking for strstr... yes checking pkg-config is at least version 0.9.0... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands =========================================================================== =======================<phase: build >============================ ===> Building for phyml-3.3.20170530,1 /nxb-bin/usr/bin/make all-recursive Making all in src /nxb-bin/usr/bin/cc -I. -I.. -std=c99 -O2 -fomit-frame-pointer -funroll-loops -Wall -Winline -march=native -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.c cc: error: the clang compiler does not support '-march=native' *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/biology/phyml/work/phyml-3.3.20170530/src *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/biology/phyml/work/phyml-3.3.20170530 *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/phyml/work/phyml-3.3.20170530 *** Error code 1 Stop. make: stopped in /usr/ports/biology/phyml
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