From owner-freebsd-ports-bugs@freebsd.org Wed Jun 6 15:00:58 2018 Return-Path: Delivered-To: freebsd-ports-bugs@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id E4EE7FF8CFD for ; Wed, 6 Jun 2018 15:00:57 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from mailman.ysv.freebsd.org (mailman.ysv.freebsd.org [IPv6:2001:1900:2254:206a::50:5]) by mx1.freebsd.org (Postfix) with ESMTP id 64A5C77FCC for ; Wed, 6 Jun 2018 15:00:57 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: by mailman.ysv.freebsd.org (Postfix) id 2895AFF8CFC; Wed, 6 Jun 2018 15:00:57 +0000 (UTC) Delivered-To: ports-bugs@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 16A01FF8CFB for ; Wed, 6 Jun 2018 15:00:57 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from mxrelay.ysv.freebsd.org (mxrelay.ysv.freebsd.org [IPv6:2001:1900:2254:206a::19:3]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client CN "mxrelay.ysv.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id A734177FC8 for ; Wed, 6 Jun 2018 15:00:56 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from kenobi.freebsd.org (kenobi.freebsd.org [IPv6:2001:1900:2254:206a::16:76]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.ysv.freebsd.org (Postfix) with ESMTPS id BAB6527410 for ; Wed, 6 Jun 2018 15:00:55 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from kenobi.freebsd.org ([127.0.1.118]) by kenobi.freebsd.org (8.15.2/8.15.2) with ESMTP id w56F0t8J067221 for ; Wed, 6 Jun 2018 15:00:55 GMT (envelope-from bugzilla-noreply@freebsd.org) Received: (from www@localhost) by kenobi.freebsd.org (8.15.2/8.15.2/Submit) id w56F0tlr067217 for ports-bugs@FreeBSD.org; Wed, 6 Jun 2018 15:00:55 GMT (envelope-from bugzilla-noreply@freebsd.org) X-Authentication-Warning: kenobi.freebsd.org: www set sender to bugzilla-noreply@freebsd.org using -f From: bugzilla-noreply@freebsd.org To: ports-bugs@FreeBSD.org Subject: [Bug 228758] biology/tRNAscan-SE: update to 1.3.1 Date: Wed, 06 Jun 2018 15:00:54 +0000 X-Bugzilla-Reason: AssignedTo X-Bugzilla-Type: changed X-Bugzilla-Watch-Reason: None X-Bugzilla-Product: Ports & Packages X-Bugzilla-Component: Individual Port(s) X-Bugzilla-Version: Latest X-Bugzilla-Keywords: X-Bugzilla-Severity: Affects Only Me X-Bugzilla-Who: mzaki@niid.go.jp X-Bugzilla-Status: New X-Bugzilla-Resolution: X-Bugzilla-Priority: --- X-Bugzilla-Assigned-To: ports-bugs@FreeBSD.org X-Bugzilla-Flags: X-Bugzilla-Changed-Fields: attachments.isobsolete attachments.created Message-ID: In-Reply-To: References: Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable X-Bugzilla-URL: https://bugs.freebsd.org/bugzilla/ Auto-Submitted: auto-generated MIME-Version: 1.0 X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.26 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Wed, 06 Jun 2018 15:00:58 -0000 https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D228758 Motomichi Matsuzaki changed: What |Removed |Added ---------------------------------------------------------------------------- Attachment #194016|0 |1 is obsolete| | --- Comment #3 from Motomichi Matsuzaki --- Created attachment 194046 --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=3D194046&action= =3Dedit svn diff (to 2.0.0) (In reply to Kirill Ponomarev from comment #2) Here you are! Changes: * updating to 2.0.0 (without bumping PORTEPOCH) * taking over MAINTAINER * new COMMENT * add RUN_DEPENDS on upcoming biology/infernal (bug #228776) This version uses autotools, so patches/knobs are rewritten from scratch. The original Makefile installs some files to strange places, so the location is modified to fit with FreeBSD hier(7) as follows: * configuration file: $(bindir) to $(sysconfdir) * header files: $(includedir) to not installed since unnecessary * static data files: $(libdir) to $(pkgdatadir) * perl modules: $(libdir) to $(pkgdatadir) Tested by: poudriere testport (amd64/i386 11.1) --=20 You are receiving this mail because: You are the assignee for the bug.=