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Date:      Wed, 06 Jun 2018 15:00:54 +0000
From:      bugzilla-noreply@freebsd.org
To:        ports-bugs@FreeBSD.org
Subject:   [Bug 228758] biology/tRNAscan-SE: update to 1.3.1
Message-ID:  <bug-228758-7788-wDvfPEOhdQ@https.bugs.freebsd.org/bugzilla/>
In-Reply-To: <bug-228758-7788@https.bugs.freebsd.org/bugzilla/>
References:  <bug-228758-7788@https.bugs.freebsd.org/bugzilla/>

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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D228758

Motomichi Matsuzaki <mzaki@niid.go.jp> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
 Attachment #194016|0                           |1
        is obsolete|                            |

--- Comment #3 from Motomichi Matsuzaki <mzaki@niid.go.jp> ---
Created attachment 194046
  --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=3D194046&action=
=3Dedit
svn diff (to 2.0.0)

(In reply to Kirill Ponomarev from comment #2)

Here you are!

Changes:
* updating to 2.0.0 (without bumping PORTEPOCH)
* taking over MAINTAINER
* new COMMENT
* add RUN_DEPENDS on upcoming biology/infernal (bug #228776)

This version uses autotools, so patches/knobs are rewritten from scratch.

The original Makefile installs some files to strange places,
so the location is modified to fit with FreeBSD hier(7) as follows:
* configuration file: $(bindir) to $(sysconfdir)
* header files: $(includedir) to not installed since unnecessary
* static data files: $(libdir) to $(pkgdatadir)
* perl modules: $(libdir) to $(pkgdatadir)

Tested by: poudriere testport (amd64/i386 11.1)

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