Date: Sun, 4 Nov 2018 17:13:58 +0000 (UTC) From: Thierry Thomas <thierry@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r484110 - in head/science: bft code_saturne code_saturne/files ecs fvm mei ncs Message-ID: <201811041713.wA4HDwPY041790@repo.freebsd.org>
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Author: thierry Date: Sun Nov 4 17:13:58 2018 New Revision: 484110 URL: https://svnweb.freebsd.org/changeset/ports/484110 Log: bft, ecs, fvm, mei and ncs have been merged to code_saturne. Upgrade it to v5.3.0. Added: head/science/code_saturne/ - copied from r484109, head/science/ncs/ head/science/code_saturne/files/patch-libple_tests_Makefile.am (contents, props changed) Deleted: head/science/bft/ head/science/code_saturne/files/patch-config_cs_auto_flags.sh head/science/code_saturne/files/patch-configure head/science/code_saturne/files/patch-src_base_tremai.c head/science/ecs/ head/science/fvm/ head/science/mei/ head/science/ncs/ Modified: head/science/code_saturne/Makefile head/science/code_saturne/distinfo head/science/code_saturne/pkg-descr head/science/code_saturne/pkg-plist Modified: head/science/code_saturne/Makefile ============================================================================== --- head/science/ncs/Makefile Sun Nov 4 16:58:30 2018 (r484109) +++ head/science/code_saturne/Makefile Sun Nov 4 17:13:58 2018 (r484110) @@ -1,114 +1,82 @@ # Created by: thierry@pompo.net # $FreeBSD$ -PORTNAME= ncs -PORTVERSION= 2.0.8 -PORTREVISION= 6 +PORTNAME= code_saturne +PORTVERSION= 5.3.0 +DISTVERSIONPREFIX= v CATEGORIES= science parallel -MASTER_SITES= http://code-saturne.org/releases/ MAINTAINER= thierry@FreeBSD.org -COMMENT= Code_Saturne Kernel +COMMENT= EDF's general purpose Computational Fluid Dynamics (CFD) software LICENSE= GPLv2 -BROKEN= conflicting dependencies +BUILD_DEPENDS= python:lang/python +LIB_DEPENDS= libsysinfo.so:devel/libsysinfo \ + libcgns.so:science/cgnslib \ + libhdf5.so:science/hdf5 \ + libomp.so:devel/openmp \ + libmedC.so:french/med +RUN_DEPENDS= xmgrace:math/grace \ + bash:shells/bash \ + xterm:x11/xterm -BUILD_DEPENDS= cs_preprocess:science/ecs -LIB_DEPENDS= libbft.so:science/bft \ - libcgns.so:science/cgnslib \ - libfvm.so:science/fvm \ - libhdf5.so:science/hdf5 \ - libmedC.so:french/med \ - libmei.so:science/mei -RUN_DEPENDS= xmgrace:math/grace \ - bash:shells/bash \ - xterm:x11/xterm \ - cs_preprocess:science/ecs +USE_GITHUB= yes +GH_ACCOUNT= code-saturne -USES= fortran gettext gmake iconv libtool pyqt:4 python:2.7 shebangfix +USES= autoreconf bison fortran gettext gnome gmake iconv libtool \ + pyqt:5 python:2.7 shebangfix USE_GNOME= libxml2 -USE_PYQT= core xml_build -SHEBANG_FILES= bin/runcase.in +USE_PYQT= core gui sip widgets xml_build CPPFLAGS+= -I${LOCALBASE}/include -I${LOCALBASE}/include/libxml2 GNU_CONFIGURE= yes -CONFIGURE_ENV= MPI_LIBS="${MPI_LIBS}" \ - PYEXE="${PYTHON_CMD}" -CONFIGURE_ARGS= --with-blas-libs="${BLASLIB} ${LAPACKLIB}" -MAKE_ENV= NOM_ARCH=${OPSYS} CS_MPI_PATH=${MPI_HOME}/bin \ - PTHREAD_LIBS=-lpthread TERM=${TERM} \ - MPI_HOME=${MPI_HOME} MPI_LIBS="${MPI_LIBS}" USE_LDCONFIG= yes -FORTRANLIBDIR= `${DIRNAME} \\`${FC} -print-libgcc-file-name\\`` -FORTRANLIBDIR2= `${DIRNAME} \\`${FC} -print-libgcc-file-name\\``/../../../ - -OPTIONS_DEFINE= DOCS EXAMPLES BATCH +OPTIONS_DEFINE= DOCS EXAMPLES ATLAS BATCH MPI +OPTIONS_DEFAULT= BATCH MPI METIS +OPTIONS_RADIO= METIS +OPTIONS_RADIO_METIS= METIS PARMETIS +ATLAS_USES= blaslapack:atlas +ATLAS_CONFIGURE_ON= --with-blas=yes --with-blas-type=ATLAS BATCH_DESC= Use Torque to submit batches -BATCH_CONFIGURE_WITH= batch=PBS -BATCH_LIB_DEPENDS= libtorque.so:sysutils/torque +BATCH_RUN_DEPENDS= pbs-config:sysutils/torque +MPI_LIB_DEPENDS= libmpi.so:net/mpich +MPI_CONFIGURE_WITH= mpi +METIS_LIB_DEPENDS= libmetis.so:math/metis +METIS_CONFIGURE_ON= --with-metis-include="${LOCALBASE}/include" +PARMETIS_LIB_DEPENDS= libparmetis.so:math/parmetis +PARMETIS_CONFIGURE_ON= --with-metis-include="${LOCALBASE}/include/parmetis" \ + --with-metis-lib="${LOCALBASE}/lib/parmetis" +PARMETIS_CONFIGURE_ENV= LIBS=-lexecinfo -OPTIONS_RADIO= BLAS -OPTIONS_RADIO_BLAS= REFERENCE ATLAS -OPTIONS_DEFAULT= REFERENCE +#TEST_TARGET= check -REFERENCE_DESC= Blas / Lapack -REFERENCE_USES= blaslapack:netlib - -ATLAS_DESC= ATLAS -ATLAS_USES= blaslapack:atlas - -.include <bsd.port.options.mk> - -.if ${PORT_OPTIONS:MREFERENCE} -CONFIGURE_ARGS+= --with-blas-type=BLAS -.else -CONFIGURE_ARGS+= --with-blas-type=ATLAS -.endif - .if defined(PACKAGE_BUILDING) TERM= vt100 # Force for pointyhat to override su .else TERM?= vt100 # Default value needed for tput in jail or tinderbox .endif -SUB_DIRS= data include src users -BIN_SCRIPTS= autovalid check_mesh compiler_version cree_sat cs.exe gracehst \ - grp info_cs lance_install rang_mpi.sh -BIN_DATAS= Makefile SaturneGUI autovalid.xml cs_profile lance lance.help \ - macros_FreeBSD.mk +.include <bsd.port.options.mk> -.if defined(WITH_OPENMPI) -MPI_HOME= ${LOCALBASE}/mpi/openmpi -BUILD_DEPENDS+= ${MPI_HOME}/bin/mpicc:net/openmpi -RUN_DEPENDS+= ${MPI_HOME}/bin/mpirun:net/openmpi -MPI_LIBS= -lmpi -lorte -lopal -.else -MPI_HOME= ${LOCALBASE} -BUILD_DEPENDS+= ${MPI_HOME}/bin/mpicc:net/mpich2 -RUN_DEPENDS+= ${MPI_HOME}/bin/mpirun:net/mpich2 -MPI_LIBS= -lmpich -lmpl -lpthread -.endif - .if ${PORT_OPTIONS:MDOCS} USE_TEX= tex:build -BUILD_DEPENDS+= fig2dev:print/transfig +BUILD_DEPENDS+= fig2dev:print/transfig \ + doxygen:devel/doxygen \ + dot:graphics/graphviz \ + sphinx-build:textproc/py-sphinx@${PY_FLAVOR} ALL_TARGET= all pdf -INSTALL_TARGET= install install-pdf -DOCS= AUTHORS COMPATIBILITY ChangeLog README +DOCS= AUTHORS ChangeLog README .endif -RUN_DEPENDS+= xpdf:graphics/xpdf +pre-configure: + (cd ${WRKSRC} && ${LS} preprocessor/*/*.c src/*/*.c* | \ + ${GREP} -v user_examples > po/POTFILES.in) + ${FLEX} -o ${WRKSRC}/src/mei/mei_scanner.c ${WRKSRC}/src/mei/mei_scanner.l + ${LOCALBASE}/bin/bison --defines=${WRKSRC}/src/mei/mei_parser.h \ + -o ${WRKSRC}/src/mei/mei_parser.c ${WRKSRC}/src/mei/mei_parser.y -pre-everything:: - @${ECHO_MSG} - @${ECHO_MSG} "By default ncs is built with MPICH2, but you can set WITH_OPENMPI" - @${ECHO_MSG} "if you prefer." - @${ECHO_MSG} - post-install: - @cd ${STAGEDIR}${PREFIX}/lib && ${STRIP_CMD} libsaturne.so* libsyrcs.so* libsyrcs.so* - @${REINPLACE_CMD} -i '' -e 's|^#!.*|#!${PYTHON_CMD}|' ${STAGEDIR}${PREFIX}/bin/code_saturne .if ${PORT_OPTIONS:MDOCS} ${MKDIR} ${STAGEDIR}${DOCSDIR} ${INSTALL_DATA} ${DOCS:C|^|${WRKSRC}/|} ${STAGEDIR}${DOCSDIR} Modified: head/science/code_saturne/distinfo ============================================================================== --- head/science/ncs/distinfo Sun Nov 4 16:58:30 2018 (r484109) +++ head/science/code_saturne/distinfo Sun Nov 4 17:13:58 2018 (r484110) @@ -1,2 +1,3 @@ -SHA256 (ncs-2.0.8.tar.gz) = 5a363e716d0ad225d3de52169b846bb3885f3e4eb82c1074cdd1086e4b1fdf80 -SIZE (ncs-2.0.8.tar.gz) = 10840408 +TIMESTAMP = 1541083916 +SHA256 (code-saturne-code_saturne-v5.3.0_GH0.tar.gz) = df1bd7784311842a3930bd2ab9490d261d7860c330ee0c3d6070c2b67e0d6734 +SIZE (code-saturne-code_saturne-v5.3.0_GH0.tar.gz) = 18872952 Added: head/science/code_saturne/files/patch-libple_tests_Makefile.am ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/code_saturne/files/patch-libple_tests_Makefile.am Sun Nov 4 17:13:58 2018 (r484110) @@ -0,0 +1,11 @@ +--- libple/tests/Makefile.am.orig 2018-10-26 17:43:02 UTC ++++ libple/tests/Makefile.am +@@ -33,7 +33,7 @@ check_PROGRAMS += ple_coupling_test + ple_coupling_test_SOURCES = ple_coupling_test.c + ple_coupling_test_CPPFLAGS = -I$(top_srcdir)/src $(MPI_CPPFLAGS) + ple_coupling_test_LDFLAGS = $(MPI_LDFLAGS) +-ple_coupling_test_LDADD = $(top_builddir)/src/libple.la $(MPI_LIBS) -lm ++ple_coupling_test_LDADD = $(top_builddir)/src/libple.la $(MPI_LIBS) $(INTLLIBS) -lm + endif + + # Uncomment for tests execution at "make check" Modified: head/science/code_saturne/pkg-descr ============================================================================== --- head/science/ncs/pkg-descr Sun Nov 4 16:58:30 2018 (r484109) +++ head/science/code_saturne/pkg-descr Sun Nov 4 17:13:58 2018 (r484110) @@ -1,19 +1,11 @@ -Code Saturne is a system designed to solve the Navier-Stokes equations in the -cases of 2D, 2D axisymmetric or 3D flows. Its main module is designed for the -simulation of flows which may be steady or unsteady, laminar or turbulent, -incompressible or potentially dilatable, isothermal or not. -Scalars and turbulent fluctuations of scalars can be taken into account. The -code includes specific modules, referred to as "specific physics", for the -treatment of lagrangian particle tracking, semi-transparent radiative transfer, -gas combustion, pulverised coal combustion, electricity effects (Joule effect -and electric arcs) and compressible flows. The code also includes an engineering -module, Matisse, for the simulation of nuclear waste surface storage. +Code_Saturne is EDF's general purpose Computational Fluid Dynamics (CFD) +software. -Code_Saturne relies on a finite volume discretisation and allows the use of -various mesh types which may be hybrid (containing several kinds of elements) -and may have structural non-conformities (hanging nodes). - -NCS means "Noyau Code Saturne", i.e. "Code Saturne Kernel". This is the -numerical solver. +The basic capabilities of Code_Saturne enable the handling of either +incompressible or expandable flows with or without heat transfer and turbulence. +Dedicated modules are available for specific physics such as radiative heat +transfer, combustion (gas, coal, heavy fuel oil, ...), magneto-hydrodynamics, +compressible flows, two-phase flows (Euler-Lagrange approach with two-way +coupling), or atmospheric flows. WWW: http://www.code-saturne.org/ Modified: head/science/code_saturne/pkg-plist ============================================================================== --- head/science/ncs/pkg-plist Sun Nov 4 16:58:30 2018 (r484109) +++ head/science/code_saturne/pkg-plist Sun Nov 4 17:13:58 2018 (r484110) @@ -1,885 +1,1404 @@ bin/code_saturne -bin/cs_solver +bin/ple-config etc/bash_completion.d/code_saturne -include/alaste.h -include/albase.h -include/alstru.h -include/atincl.h -include/cfpoin.h -include/coincl.h -include/cpincl.h -include/cplsat.h -include/cs_ale.h -include/cs_ast_coupling.h -include/cs_base.h -include/cs_benchmark.h -include/cs_blas.h -include/cs_boundary_conditions.h -include/cs_calcium.h -include/cs_config.h -include/cs_coupling.h -include/cs_ctwr.h -include/cs_ctwr_air_props.h -include/cs_ctwr_halo.h -include/cs_ctwr_mesh.h -include/cs_ext_neighborhood.h -include/cs_gradient.h -include/cs_grid.h -include/cs_gui.h -include/cs_gui_boundary_conditions.h -include/cs_gui_conjugate_heat_transfer.h -include/cs_gui_matisse.h -include/cs_gui_mobile_mesh.h -include/cs_gui_particles.h -include/cs_gui_radiative_transfer.h -include/cs_gui_specific_physics.h -include/cs_gui_util.h -include/cs_gui_variables.h -include/cs_halo.h -include/cs_io.h -include/cs_join.h -include/cs_join_intersect.h -include/cs_join_merge.h -include/cs_join_mesh.h -include/cs_join_perio.h -include/cs_join_post.h -include/cs_join_set.h -include/cs_join_split.h -include/cs_join_update.h -include/cs_join_util.h -include/cs_lagr.h -include/cs_lagr_perio.h -include/cs_matrix.h -include/cs_mesh.h -include/cs_mesh_coherency.h -include/cs_mesh_connect.h -include/cs_mesh_halo.h -include/cs_mesh_quality.h -include/cs_mesh_quantities.h -include/cs_mesh_solcom.h -include/cs_mesh_warping.h -include/cs_multigrid.h -include/cs_numbering.h -include/cs_opts.h -include/cs_parall.h -include/cs_perio.h -include/cs_post.h -include/cs_preprocessor_data.h -include/cs_prototypes.h -include/cs_proxy_comm.h -include/cs_renumber.h -include/cs_restart.h -include/cs_sat_coupling.h -include/cs_search.h -include/cs_selector.h -include/cs_sles.h -include/cs_sort.h -include/cs_syr3_comm.h -include/cs_syr3_coupling.h -include/cs_syr3_messages.h -include/cs_syr4_coupling.h -include/cs_syr_coupling.h -include/cs_tpar1d.h -include/cs_ventil.h -include/cstnum.h -include/cstphy.h -include/ctincl.h -include/dimens.h -include/dimfbr.h -include/elincl.h -include/entsor.h -include/fuincl.h -include/ihmpre.h -include/lagdim.h -include/lagpar.h -include/lagran.h -include/matiss.h -include/mltgrd.h -include/numvar.h -include/optcal.h -include/parall.h -include/paramx.h -include/period.h -include/pointe.h -include/ppcpfu.h -include/ppincl.h -include/ppppar.h -include/ppthch.h -include/radiat.h -include/tcpumx.h -include/tremai.h -include/vector.h -include/vortex.h -%%PYTHON_SITELIBDIR%%/ncs/Base/BrowserForm.py -%%PYTHON_SITELIBDIR%%/ncs/Base/BrowserForm.pyc 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