Date: Fri, 16 May 2014 21:10:14 GMT From: pkg-fallout-builder@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [REL - head-amd64-default][science/mpb] Failed for mpb-1.4.2_15 in build Message-ID: <201405162110.s4GLAEZq057560@beefy2.isc.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Last committer: sunpoet@FreeBSD.org Ident: $FreeBSD: head/science/mpb/Makefile 352854 2014-05-03 00:55:30Z sunpoet $ Log URL: http://beefy2.isc.freebsd.org/bulk/head-amd64-default/2014-05-16_11h58m06s/logs/mpb-1.4.2_15.log Build URL: http://beefy2.isc.freebsd.org/bulk/head-amd64-default/2014-05-16_11h58m06s Log: ====>> Building science/mpb build started at Fri May 16 21:09:34 UTC 2014 port directory: /usr/ports/science/mpb building for: FreeBSD head-amd64-default-job-09 11.0-CURRENT FreeBSD 11.0-CURRENT r264257 amd64 maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: head/science/mpb/Makefile 352854 2014-05-03 00:55:30Z sunpoet $ Poudriere version: 3.1-pre Host OSVERSION: 1100013 Jail OSVERSION: 1100018 !!! Jail is newer than host. (Jail: 1100018, Host: 1100013) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- OSVERSION=1100018 UNAME_v=FreeBSD 11.0-CURRENT r264257 UNAME_r=11.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/build/head-amd64-default/ref PKG_EXT=txz tpid=21698 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNG=1 PKGNAME=mpb-1.4.2_15 PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f PKG_ADD=/usr/local/sbin/pkg-static add OLDPWD=/usr/local/poudriere/data/build/head-amd64-default/ref/poudriere/rdeps PWD=/usr/local/poudriere/data/build/head-amd64-default/ref/poudriere/pool MASTERNAME=head-amd64-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=/poudriere/pkg-static version PKG_BIN=/usr/local/sbin/pkg-static ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for mpb-1.4.2_15: ATLAS=off: Use math/atlas instead of math/lapack ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --with-lapack=-llapack --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- TMPDIR="/tmp" TMPDIR="/tmp" F77="gfortran47" FC="gfortran47" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc47" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc47" SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- TMPDIR="/tmp" TMPDIR="/tmp" F77="gfortran47" FC="gfortran47" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc47" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc47" SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="-I/usr/local/include" LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc47 -L/usr/local/lib/gcc47 -B/usr/local/bin" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local PORTDOCS="" PORTEXAMPLES="" PORTDATA="" LIB32DIR=lib DOCSDIR="share/doc/mpb" EXAMPLESDIR="share/examples/mpb" DATADIR="share/mpb" WWWDIR="www/mpb" ETCDIR="etc/mpb" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/mpb DOCSDIR=/usr/local/share/doc/mpb EXAMPLESDIR=/usr/local/share/examples/mpb WWWDIR=/usr/local/www/mpb ETCDIR=/usr/local/etc/mpb --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ===> Cleaning for mpb-1.4.2_15 =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> mpb-1.4.2_15 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.2.7_2.txz Installing pkg-1.2.7_2... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of mpb-1.4.2_15 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by mpb-1.4.2_15 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by mpb-1.4.2_15 for building => SHA256 Checksum OK for mpb-1.4.2.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by mpb-1.4.2_15 for building ===> Extracting for mpb-1.4.2_15 => SHA256 Checksum OK for mpb-1.4.2.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for mpb-1.4.2_15 =========================================================================== =======================<phase: build-depends >============================ ===> mpb-1.4.2_15 depends on executable: bash - not found ===> Verifying install for bash in /usr/ports/shells/bash ===> Installing existing package /packages/All/bash-4.3.11_2.txz Installing bash-4.3.11_2...Installing gettext-0.18.3.1_1... done Updating /etc/shells done ====================================================================== bash requires fdescfs(5) mounted on /dev/fd If you have not done it yet, please do the following: mount -t fdescfs fdesc /dev/fd To make it permanent, you need the following lines in /etc/fstab: fdesc /dev/fd fdescfs rw 0 0 ====================================================================== ===> Returning to build of mpb-1.4.2_15 ===> mpb-1.4.2_15 depends on executable: gfortran47 - not found ===> Verifying install for gfortran47 in /usr/ports/lang/gcc ===> Installing existing package /packages/All/gcc-4.7.3_1.txz Installing gcc-4.7.3_1...Installing binutils-2.24... done Installing gcc-ecj-4.5... done Installing gmp-5.1.3_2... done Installing mpc-1.0.2...Installing mpfr-3.1.2_2... done done done To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc47 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> Returning to build of mpb-1.4.2_15 ===> mpb-1.4.2_15 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ ===> mpb-1.4.2_15 depends on shared library: libfftw.so - not found ===> Verifying for libfftw.so in /usr/ports/math/fftw ===> Installing existing package /packages/All/fftw-2.1.5_10.txz Installing fftw-2.1.5_10... done ===> Returning to build of mpb-1.4.2_15 ===> mpb-1.4.2_15 depends on shared library: libhdf5.so - not found ===> Verifying for libhdf5.so in /usr/ports/science/hdf5 ===> Installing existing package /packages/All/hdf5-1.8.12.txz Installing hdf5-1.8.12... done ===> Returning to build of mpb-1.4.2_15 ===> mpb-1.4.2_15 depends on shared library: libctl.so - not found ===> Verifying for libctl.so in /usr/ports/science/libctl ===> Installing existing package /packages/All/libctl-3.2.1_2.txz Installing libctl-3.2.1_2...Installing guile-1.8.8_1...Installing libltdl-2.4.2_3... done done done <snip> attr_id = H5Acreate(id, name, type_id, space_id, H5P_DEFAULT); ~~~~~~~~~ ^ /usr/local/include/H5Apublic.h:44:8: note: 'H5Acreate2' declared here H5_DLL hid_t H5Acreate2(hid_t loc_id, const char *attr_name, hid_t type_id, ^ matrixio.c:112:11: error: too few arguments to function call, expected 3, have 2 SUPPRESS_HDF5_ERRORS(attr_id = H5Dopen(id, name)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrixio.c:69:55: note: expanded from macro 'SUPPRESS_HDF5_ERRORS' H5Eget_auto(&xxxxx_err_func, &xxxxx_err_func_data); \ ~~~~~~~~~~~ ^ /usr/local/include/H5Epublic.h:173:8: note: 'H5Eget_auto2' declared here H5_DLL herr_t H5Eget_auto2(hid_t estack_id, H5E_auto2_t *func, void **client_data); ^ matrixio.c:112:11: error: too few arguments to function call, expected 3, have 2 SUPPRESS_HDF5_ERRORS(attr_id = H5Dopen(id, name)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrixio.c:70:28: note: expanded from macro 'SUPPRESS_HDF5_ERRORS' H5Eset_auto(NULL, NULL); \ ~~~~~~~~~~~ ^ /usr/local/include/H5Epublic.h:174:8: note: 'H5Eset_auto2' declared here H5_DLL herr_t H5Eset_auto2(hid_t estack_id, H5E_auto2_t func, void *client_data); ^ matrixio.c:112:58: error: too few arguments to function call, expected 3, have 2 SUPPRESS_HDF5_ERRORS(attr_id = H5Dopen(id, name)); ~~~~~~~ ^ matrixio.c:71:8: note: expanded from macro 'SUPPRESS_HDF5_ERRORS' { statements; } \ ^ /usr/local/include/H5Dpublic.h:123:8: note: 'H5Dopen2' declared here H5_DLL hid_t H5Dopen2(hid_t file_id, const char *name, hid_t dapl_id); ^ matrixio.c:112:11: error: too few arguments to function call, expected 3, have 2 SUPPRESS_HDF5_ERRORS(attr_id = H5Dopen(id, name)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrixio.c:72:53: note: expanded from macro 'SUPPRESS_HDF5_ERRORS' H5Eset_auto(xxxxx_err_func, xxxxx_err_func_data); \ ~~~~~~~~~~~ ^ /usr/local/include/H5Epublic.h:174:8: note: 'H5Eset_auto2' declared here H5_DLL herr_t H5Eset_auto2(hid_t estack_id, H5E_auto2_t func, void *client_data); ^ matrixio.c:119:11: error: too few arguments to function call, expected 3, have 2 SUPPRESS_HDF5_ERRORS(attr_id = H5Aopen_name(id, name)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrixio.c:69:55: note: expanded from macro 'SUPPRESS_HDF5_ERRORS' H5Eget_auto(&xxxxx_err_func, &xxxxx_err_func_data); \ ~~~~~~~~~~~ ^ /usr/local/include/H5Epublic.h:173:8: note: 'H5Eget_auto2' declared here H5_DLL herr_t H5Eget_auto2(hid_t estack_id, H5E_auto2_t *func, void **client_data); ^ matrixio.c:119:11: error: too few arguments to function call, expected 3, have 2 SUPPRESS_HDF5_ERRORS(attr_id = H5Aopen_name(id, name)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrixio.c:70:28: note: expanded from macro 'SUPPRESS_HDF5_ERRORS' H5Eset_auto(NULL, NULL); \ ~~~~~~~~~~~ ^ /usr/local/include/H5Epublic.h:174:8: note: 'H5Eset_auto2' declared here H5_DLL herr_t H5Eset_auto2(hid_t estack_id, H5E_auto2_t func, void *client_data); ^ matrixio.c:119:11: error: too few arguments to function call, expected 3, have 2 SUPPRESS_HDF5_ERRORS(attr_id = H5Aopen_name(id, name)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrixio.c:72:53: note: expanded from macro 'SUPPRESS_HDF5_ERRORS' H5Eset_auto(xxxxx_err_func, xxxxx_err_func_data); \ ~~~~~~~~~~~ ^ /usr/local/include/H5Epublic.h:174:8: note: 'H5Eset_auto2' declared here H5_DLL herr_t H5Eset_auto2(hid_t estack_id, H5E_auto2_t func, void *client_data); ^ matrixio.c:419:58: error: too few arguments to function call, expected 5, have 3 sub_id = H5Gcreate(id, name, 0 /* ==> default size */ ); ~~~~~~~~~ ^ /usr/local/include/H5Gpublic.h:75:8: note: 'H5Gcreate2' declared here H5_DLL hid_t H5Gcreate2(hid_t loc_id, const char *name, hid_t lcpl_id, ^ matrixio.c:424:17: warning: expression result unused [-Wunused-value] IF_EXCLUSIVE(0,MPI_Barrier(MPI_COMM_WORLD)); ^ matrixio.c:57:32: note: expanded from macro 'IF_EXCLUSIVE' # define IF_EXCLUSIVE(yes,no) yes ^ matrixio.c:429:29: error: too few arguments to function call, expected 3, have 2 sub_id = H5Gopen(id, name); ~~~~~~~ ^ /usr/local/include/H5Gpublic.h:78:8: note: 'H5Gopen2' declared here H5_DLL hid_t H5Gopen2(hid_t loc_id, const char *name, hid_t gapl_id); ^ matrixio.c:427:17: warning: expression result unused [-Wunused-value] IF_EXCLUSIVE(0,MPI_Barrier(MPI_COMM_WORLD)); ^ matrixio.c:57:32: note: expanded from macro 'IF_EXCLUSIVE' # define IF_EXCLUSIVE(yes,no) yes ^ matrixio.c:456:32: error: too few arguments to function call, expected 3, have 2 data_id = H5Dopen(id, name); ~~~~~~~ ^ /usr/local/include/H5Dpublic.h:123:8: note: 'H5Dopen2' declared here H5_DLL hid_t H5Dopen2(hid_t file_id, const char *name, hid_t dapl_id); ^ matrixio.c:458:39: error: too few arguments to function call, expected 3, have 2 CHECK((data_id = H5Dopen(id, name)) >= 0, "error in H5Dopen"); ~~~~~~~ ^ ./util/check.h:37:12: note: expanded from macro 'CHECK' if (!(condition)) { \ ^ /usr/local/include/H5Dpublic.h:123:8: note: 'H5Dopen2' declared here H5_DLL hid_t H5Dopen2(hid_t file_id, const char *name, hid_t dapl_id); ^ matrixio.c:471:23: warning: comparison of integers of different signs: 'hsize_t' (aka 'unsigned long long') and 'const int' [-Wsign-compare] CHECK(dims_copy[i] == dims[i], ~~~~~~~~~~~~ ^ ~~~~~~~ ./util/check.h:37:12: note: expanded from macro 'CHECK' if (!(condition)) { \ ^ matrixio.c:502:17: warning: expression result unused [-Wunused-value] IF_EXCLUSIVE(0,MPI_Barrier(MPI_COMM_WORLD)); ^ matrixio.c:57:32: note: expanded from macro 'IF_EXCLUSIVE' # define IF_EXCLUSIVE(yes,no) yes ^ matrixio.c:525:69: error: too few arguments to function call, expected 7, have 5 data_id = H5Dcreate(id, name, type_id, space_id, H5P_DEFAULT); ~~~~~~~~~ ^ matrixio.c:57:32: note: expanded from macro 'IF_EXCLUSIVE' # define IF_EXCLUSIVE(yes,no) yes ^ /usr/local/include/H5Dpublic.h:119:8: note: 'H5Dcreate2' declared here H5_DLL hid_t H5Dcreate2(hid_t loc_id, const char *name, hid_t type_id, ^ matrixio.c:527:35: error: too few arguments to function call, expected 3, have 2 data_id = H5Dopen(id, name), ~~~~~~~ ^ matrixio.c:57:32: note: expanded from macro 'IF_EXCLUSIVE' # define IF_EXCLUSIVE(yes,no) yes ^ /usr/local/include/H5Dpublic.h:123:8: note: 'H5Dopen2' declared here H5_DLL hid_t H5Dopen2(hid_t file_id, const char *name, hid_t dapl_id); ^ matrixio.c:551:6: error: too few arguments to function call, expected 3, have 2 SUPPRESS_HDF5_ERRORS(data_id = H5Dopen(id, name)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrixio.c:69:55: note: expanded from macro 'SUPPRESS_HDF5_ERRORS' H5Eget_auto(&xxxxx_err_func, &xxxxx_err_func_data); \ ~~~~~~~~~~~ ^ /usr/local/include/H5Epublic.h:173:8: note: 'H5Eget_auto2' declared here H5_DLL herr_t H5Eget_auto2(hid_t estack_id, H5E_auto2_t *func, void **client_data); ^ matrixio.c:551:6: error: too few arguments to function call, expected 3, have 2 SUPPRESS_HDF5_ERRORS(data_id = H5Dopen(id, name)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrixio.c:70:28: note: expanded from macro 'SUPPRESS_HDF5_ERRORS' H5Eset_auto(NULL, NULL); \ ~~~~~~~~~~~ ^ /usr/local/include/H5Epublic.h:174:8: note: 'H5Eset_auto2' declared here H5_DLL herr_t H5Eset_auto2(hid_t estack_id, H5E_auto2_t func, void *client_data); ^ matrixio.c:551:53: error: too few arguments to function call, expected 3, have 2 SUPPRESS_HDF5_ERRORS(data_id = H5Dopen(id, name)); ~~~~~~~ ^ matrixio.c:71:8: note: expanded from macro 'SUPPRESS_HDF5_ERRORS' { statements; } \ ^ /usr/local/include/H5Dpublic.h:123:8: note: 'H5Dopen2' declared here H5_DLL hid_t H5Dopen2(hid_t file_id, const char *name, hid_t dapl_id); ^ matrixio.c:551:6: error: too few arguments to function call, expected 3, have 2 SUPPRESS_HDF5_ERRORS(data_id = H5Dopen(id, name)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrixio.c:72:53: note: expanded from macro 'SUPPRESS_HDF5_ERRORS' H5Eset_auto(xxxxx_err_func, xxxxx_err_func_data); \ ~~~~~~~~~~~ ^ /usr/local/include/H5Epublic.h:174:8: note: 'H5Eset_auto2' declared here H5_DLL herr_t H5Eset_auto2(hid_t estack_id, H5E_auto2_t func, void *client_data); ^ matrixio.c:655:10: warning: passing 'hssize_t *' (aka 'long long *') to parameter of type 'const hsize_t *' (aka 'const unsigned long long *') converts between pointers to integer types with different sign [-Wpointer-sign] start, NULL, count, NULL); ^~~~~ /usr/local/include/H5Spublic.h:112:22: note: passing argument to parameter 'start' here const hsize_t start[], ^ matrixio.c:664:10: warning: passing 'hssize_t *' (aka 'long long *') to parameter of type 'const hsize_t *' (aka 'const unsigned long long *') converts between pointers to integer types with different sign [-Wpointer-sign] start, data_copy_stride <= 1 ? NULL : strides, ^~~~~ /usr/local/include/H5Spublic.h:112:22: note: passing argument to parameter 'start' here const hsize_t start[], ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 6 warnings and 20 errors generated. *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/science/mpb/work/mpb-1.4.2/src/matrixio *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/science/mpb/work/mpb-1.4.2 *** Error code 1 Stop. make: stopped in /usr/ports/science/mpb ===> Cleaning for mpb-1.4.2_15
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