Date: Fri, 16 May 2014 22:01:08 GMT From: pkg-fallout-builder@FreeBSD.org To: sylvio@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [REL - head-amd64-default][biology/mummer] Failed for mummer-3.23 in build Message-ID: <201405162201.s4GM18Kn093784@beefy2.isc.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: sylvio@FreeBSD.org Last committer: miwi@FreeBSD.org Ident: $FreeBSD: head/biology/mummer/Makefile 348042 2014-03-13 07:41:34Z miwi $ Log URL: http://beefy2.isc.freebsd.org/bulk/head-amd64-default/2014-05-16_11h58m06s/logs/mummer-3.23.log Build URL: http://beefy2.isc.freebsd.org/bulk/head-amd64-default/2014-05-16_11h58m06s Log: ====>> Building biology/mummer build started at Fri May 16 22:01:04 UTC 2014 port directory: /usr/ports/biology/mummer building for: FreeBSD head-amd64-default-job-06 11.0-CURRENT FreeBSD 11.0-CURRENT r264257 amd64 maintained by: sylvio@FreeBSD.org Makefile ident: $FreeBSD: head/biology/mummer/Makefile 348042 2014-03-13 07:41:34Z miwi $ Poudriere version: 3.1-pre Host OSVERSION: 1100013 Jail OSVERSION: 1100018 !!! Jail is newer than host. (Jail: 1100018, Host: 1100013) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- OSVERSION=1100018 UNAME_v=FreeBSD 11.0-CURRENT r264257 UNAME_r=11.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/build/head-amd64-default/ref PKG_EXT=txz tpid=88681 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNG=1 PKGNAME=mummer-3.23 PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f PKG_ADD=/usr/local/sbin/pkg-static add OLDPWD=/usr/local/poudriere/data/build/head-amd64-default/ref/poudriere/rdeps PWD=/usr/local/poudriere/data/build/head-amd64-default/ref/poudriere/pool MASTERNAME=head-amd64-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=/poudriere/pkg-static version PKG_BIN=/usr/local/sbin/pkg-static ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for mummer-3.23: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- TMPDIR="/tmp" TMPDIR="/tmp" MAKE=gmake SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- TMPDIR="/tmp" TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local PORTDOCS="" PORTEXAMPLES="" PORTDATA="" LIB32DIR=lib DOCSDIR="share/doc/mummer" EXAMPLESDIR="share/examples/mummer" DATADIR="share/mummer" WWWDIR="www/mummer" ETCDIR="etc/mummer" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/mummer DOCSDIR=/usr/local/share/doc/mummer EXAMPLESDIR=/usr/local/share/examples/mummer WWWDIR=/usr/local/www/mummer ETCDIR=/usr/local/etc/mummer --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ===> Cleaning for mummer-3.23 =======================<phase: check-sanity >============================ =========================================================================== =======================<phase: pkg-depends >============================ ===> mummer-3.23 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.2.7_2.txz Installing pkg-1.2.7_2... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of mummer-3.23 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> Fetching all distfiles required by mummer-3.23 for building =========================================================================== =======================<phase: checksum >============================ ===> Fetching all distfiles required by mummer-3.23 for building => SHA256 Checksum OK for MUMmer3.23.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> Fetching all distfiles required by mummer-3.23 for building ===> Extracting for mummer-3.23 => SHA256 Checksum OK for MUMmer3.23.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for mummer-3.23 =========================================================================== =======================<phase: build-depends >============================ ===> mummer-3.23 depends on executable: gmake - not found ===> Verifying install for gmake in /usr/ports/devel/gmake ===> Installing existing package /packages/All/gmake-3.82_1.txz Installing gmake-3.82_1...Installing gettext-0.18.3.1_1... done done ===> Returning to build of mummer-3.23 =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for mummer-3.23 =========================================================================== =======================<phase: build >============================ ===> Building for mummer-3.23 gcc: not found g++: not found perl: not found gmake[1]: Entering directory `/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23' cd /wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz; gmake mummer gmake[2]: Entering directory `/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz' cd libbasedir; gmake libbase.a gmake[3]: Entering directory `/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz/libbasedir' O3 -c -o cleanMUMcand.o cleanMUMcand.c gmake[3]: O3: Command not found gmake[3]: [cleanMUMcand.o] Error 127 (ignored) O3 -c -o clock.o clock.c gmake[3]: O3: Command not found gmake[3]: [clock.o] Error 127 (ignored) O3 -c -o mapfile.o mapfile.c gmake[3]: O3: Command not found gmake[3]: [mapfile.o] Error 127 (ignored) O3 -c -o multiseq.o multiseq.c gmake[3]: O3: Command not found gmake[3]: [multiseq.o] Error 127 (ignored) O3 -c -o procopt.o procopt.c gmake[3]: O3: Command not found gmake[3]: [procopt.o] Error 127 (ignored) O3 -c -o safescpy.o safescpy.c gmake[3]: O3: Command not found gmake[3]: [safescpy.o] Error 127 (ignored) O3 -c -o seterror.o seterror.c gmake[3]: O3: Command not found gmake[3]: [seterror.o] Error 127 (ignored) O3 -c -o space.o space.c gmake[3]: O3: Command not found gmake[3]: [space.o] Error 127 (ignored) ar sruv libbase.a cleanMUMcand.o clock.o mapfile.o multiseq.o procopt.o safescpy.o seterror.o space.o ar: warning: creating libbase.a ar: warning: can't open file: cleanMUMcand.o: No such file or directory ar: warning: can't open file: clock.o: No such file or directory ar: warning: can't open file: mapfile.o: No such file or directory ar: warning: can't open file: multiseq.o: No such file or directory ar: warning: can't open file: procopt.o: No such file or directory ar: warning: can't open file: safescpy.o: No such file or directory ar: warning: can't open file: seterror.o: No such file or directory ar: warning: can't open file: space.o: No such file or directory gmake[3]: Leaving directory `/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz/libbasedir' cd streesrc; gmake libstree.a gmake[3]: Entering directory `/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz/streesrc' O3 -I../libbasedir -DSTREEHUGE -c -o construct.o construct.c gmake[3]: O3: Command not found gmake[3]: [construct.o] Error 127 (ignored) O3 -I../libbasedir -DSTREEHUGE -c -o access.o access.c gmake[3]: O3: Command not found gmake[3]: [access.o] Error 127 (ignored) O3 -I../libbasedir -DSTREEHUGE -c -o scanpref.o scanpref.c gmake[3]: O3: Command not found gmake[3]: [scanpref.o] Error 127 (ignored) O3 -I../libbasedir -DSTREEHUGE -c -o linkloc.o linkloc.c gmake[3]: O3: Command not found gmake[3]: [linkloc.o] Error 127 (ignored) O3 -I../libbasedir -DSTREEHUGE -c -o depthtab.o depthtab.c gmake[3]: O3: Command not found gmake[3]: [depthtab.o] Error 127 (ignored) O3 -I../libbasedir -DSTREEHUGE -c -o ex2leav.o ex2leav.c gmake[3]: O3: Command not found gmake[3]: [ex2leav.o] Error 127 (ignored) O3 -I../libbasedir -DSTREEHUGE -c -o dfs.o dfs.c gmake[3]: O3: Command not found gmake[3]: [dfs.o] Error 127 (ignored) O3 -I../libbasedir -DSTREEHUGE -c -o overmax.o overmax.c gmake[3]: O3: Command not found gmake[3]: [overmax.o] Error 127 (ignored) O3 -I../libbasedir -DSTREEHUGE -c -o oversucc.o oversucc.c gmake[3]: O3: Command not found gmake[3]: [oversucc.o] Error 127 (ignored) O3 -I../libbasedir -DSTREEHUGE -c -o addleafcount.o addleafcount.c gmake[3]: O3: Command not found gmake[3]: [addleafcount.o] Error 127 (ignored) O3 -I../libbasedir -DSTREEHUGE -c -o iterator.o iterator.c gmake[3]: O3: Command not found gmake[3]: [iterator.o] Error 127 (ignored) ar sruv libstree.a construct.o access.o scanpref.o linkloc.o depthtab.o ex2leav.o dfs.o overmax.o oversucc.o addleafcount.o iterator.o ar: warning: creating libstree.a ar: warning: can't open file: construct.o: No such file or directory ar: warning: can't open file: access.o: No such file or directory ar: warning: can't open file: scanpref.o: No such file or directory ar: warning: can't open file: linkloc.o: No such file or directory ar: warning: can't open file: depthtab.o: No such file or directory ar: warning: can't open file: ex2leav.o: No such file or directory ar: warning: can't open file: dfs.o: No such file or directory ar: warning: can't open file: overmax.o: No such file or directory ar: warning: can't open file: oversucc.o: No such file or directory ar: warning: can't open file: addleafcount.o: No such file or directory ar: warning: can't open file: iterator.o: No such file or directory gmake[3]: Leaving directory `/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz/streesrc' cd mm3src; gmake mummer gmake[3]: Entering directory `/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz/mm3src' O3 -I../libbasedir -I../streesrc -c -o maxmat3.o maxmat3.c gmake[3]: O3: Command not found gmake[3]: [maxmat3.o] Error 127 (ignored) O3 -I../libbasedir -I../streesrc -c -o maxmatopt.o maxmatopt.c gmake[3]: O3: Command not found gmake[3]: [maxmatopt.o] Error 127 (ignored) O3 -I../libbasedir -I../streesrc -c -o maxmatinp.o maxmatinp.c gmake[3]: O3: Command not found gmake[3]: [maxmatinp.o] Error 127 (ignored) O3 -I../libbasedir -I../streesrc -c -o findmumcand.o findmumcand.c gmake[3]: O3: Command not found gmake[3]: [findmumcand.o] Error 127 (ignored) O3 -I../libbasedir -I../streesrc -c -o findmaxmat.o findmaxmat.c gmake[3]: O3: Command not found gmake[3]: [findmaxmat.o] Error 127 (ignored) O3 -I../libbasedir -I../streesrc -c -o procmaxmat.o procmaxmat.c gmake[3]: O3: Command not found gmake[3]: [procmaxmat.o] Error 127 (ignored) maxmat3.o maxmatopt.o maxmatinp.o findmumcand.o findmaxmat.o procmaxmat.o ../streesrc/libstree.a ../libbasedir/libbase.a \ -o /wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/mummer; chmod 755 /wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/mummer maxmat3.o: not found chmod: /wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/mummer: No such file or directory gmake[3]: *** [mummer] Error 1 gmake[3]: Leaving directory `/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz/mm3src' gmake[2]: *** [mummer] Error 2 gmake[2]: Leaving directory `/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz' gmake[1]: *** [kurtz] Error 2 gmake[1]: Leaving directory `/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23' *** Error code 1 Stop. make: stopped in /usr/ports/biology/mummer ===> Cleaning for mummer-3.23
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