Date: Fri, 01 Dec 2000 16:17:13 +0200 From: johann@egenetics.com To: FreeBSD-gnats-submit@freebsd.org Subject: ports/23210: Port update: textproc/py-martel (MAINTAINER) Message-ID: <E141qzx-000KUv-00@fling.sanbi.ac.za>
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>Number: 23210
>Category: ports
>Synopsis: Port update: textproc/py-martel (MAINTAINER)
>Confidential: no
>Severity: non-critical
>Priority: low
>Responsible: freebsd-ports
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: change-request
>Submitter-Id: current-users
>Arrival-Date: Fri Dec 01 06:20:01 PST 2000
>Closed-Date:
>Last-Modified:
>Originator: Johann Visagie
>Release: FreeBSD 5.0-CURRENT i386
>Organization:
Electric Genetics
>Environment:
>Description:
- Update of port textprox/py-martel from 0.3.5 to 0.4
- The only major new functionality is the ability to handle EOL conventions
for multiple platforms (not fully tested).
- The author contends that Martel is now ready for "real work"; 0.4 is to be
considered a stable development release.
- Added a paragraph to ${DESCR} to clarify the purpose of Martel.
- Cleaned up Makefile a bit.
- Removed an erroneously installed directory.
>How-To-Repeat:
>Fix:
diff -ruN py-martel.bak/Makefile py-martel/Makefile
--- py-martel.bak/Makefile Fri Dec 1 15:59:04 2000
+++ py-martel/Makefile Fri Dec 1 15:59:53 2000
@@ -6,32 +6,34 @@
#
PORTNAME= martel
-PORTVERSION= 0.3.5
+PORTVERSION= 0.4
PORTEPOCH= 1
CATEGORIES= textproc biology python
MASTER_SITES= http://www.biopython.org/~dalke/Martel/
-PKGNAMEPREFIX= py-
-DISTNAME= Martel-0.35
+PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
+DISTNAME= Martel-0.4
MAINTAINER= johann@egenetics.com
RUN_DEPENDS= ${PYTHON_SITELIBDIR}/TextTools/__init__.py:${PORTSDIR}/textproc/py-mxTextTools
PYTHON_VERSION= python2.0
-NO_BUILD= yes
MARTEL_DIR= ${PYTHON_SITELIBDIR}/Martel
MARTEL_EXAMPLEDIR=${PREFIX}/share/examples/martel
MARTEL_DOCDIR= ${PREFIX}/share/doc/martel
+do-build:
+ @ ${PYTHON_CMD} ${PYTHON_LIBDIR}/compileall.py ${WRKSRC}
+ @ ${PYTHON_CMD} -O ${PYTHON_LIBDIR}/compileall.py ${WRKSRC}
+
do-install:
@ ${MKDIR} ${MARTEL_DIR}
- @ (cd ${WRKSRC} && find *.py examples formats test \
+ @ (cd ${WRKSRC} && find *.py *.pyc *.pyo formats test \
| cpio --quiet -pdum -R ${BINOWN}:${BINGRP} ${MARTEL_DIR})
- @ ${PYTHON_CMD} ${PYTHON_LIBDIR}/compileall.py ${MARTEL_DIR}
- @ ${PYTHON_CMD} -O ${PYTHON_LIBDIR}/compileall.py ${MARTEL_DIR}
- @ ${MKDIR} ${MARTEL_EXAMPLEDIR}
+ @ ${MKDIR} ${MARTEL_EXAMPLEDIR}/builders
@ ${INSTALL_DATA} ${WRKSRC}/examples/* ${MARTEL_EXAMPLEDIR}
+ @ ${INSTALL_DATA} ${WRKSRC}/builders/* ${MARTEL_EXAMPLEDIR}/builders
post-install:
.if !defined(NOPORTDOCS)
diff -ruN py-martel.bak/distinfo py-martel/distinfo
--- py-martel.bak/distinfo Fri Dec 1 15:59:04 2000
+++ py-martel/distinfo Fri Dec 1 15:28:00 2000
@@ -1 +1 @@
-MD5 (Martel-0.35.tar.gz) = 8743c59c37132ecfe6a99c91f774409e
+MD5 (Martel-0.4.tar.gz) = 3f54a121b70b69f6167dd61343c73cc0
diff -ruN py-martel.bak/pkg-descr py-martel/pkg-descr
--- py-martel.bak/pkg-descr Fri Dec 1 15:59:04 2000
+++ py-martel/pkg-descr Fri Dec 1 16:10:50 2000
@@ -1,10 +1,13 @@
Martel is a parser generator, written in Python, which takes a regular
-expression grammer for a format and turns the resultant parsed tree into a
-set of callback events emulating the XML/SAX API.
+expression grammer for a file format and turns the resultant parsed tree into
+a set of callback events emulating the XML/SAX API.
-It was originally intended for use in biocomputing applications (such as
-Biopython - http://www.biopython.org/), where there is often a need to parse
-existing flat and semi-structured file formats. However, it is generally
+Essentially this means that existing and readily available XML tools can be
+used to parse non-XML flat file formats.
+
+Martel was originally intended for use in biocomputing applications (such as
+Biopython - http://www.biopython.org/) where there is often a need to parse
+flat and semi-structured legacy file formats. However, it is generally
applicable to the parsing of such files in all fields of endeavour.
More information on Martel may be found in this conference poster:
diff -ruN py-martel.bak/pkg-plist py-martel/pkg-plist
--- py-martel.bak/pkg-plist Fri Dec 1 15:59:04 2000
+++ py-martel/pkg-plist Fri Dec 1 15:56:55 2000
@@ -19,16 +19,6 @@
lib/%%PYTHON_VERSION%%/site-packages/Martel/convert_re.py
lib/%%PYTHON_VERSION%%/site-packages/Martel/convert_re.pyc
lib/%%PYTHON_VERSION%%/site-packages/Martel/convert_re.pyo
-lib/%%PYTHON_VERSION%%/site-packages/Martel/examples/README
-lib/%%PYTHON_VERSION%%/site-packages/Martel/examples/pdb1plm.ent
-lib/%%PYTHON_VERSION%%/site-packages/Martel/examples/sample.swissprot
-lib/%%PYTHON_VERSION%%/site-packages/Martel/examples/swissprot2html.py
-lib/%%PYTHON_VERSION%%/site-packages/Martel/examples/swissprot2html.pyc
-lib/%%PYTHON_VERSION%%/site-packages/Martel/examples/swissprot2html.pyo
-lib/%%PYTHON_VERSION%%/site-packages/Martel/examples/test.mol
-lib/%%PYTHON_VERSION%%/site-packages/Martel/examples/toxml.py
-lib/%%PYTHON_VERSION%%/site-packages/Martel/examples/toxml.pyc
-lib/%%PYTHON_VERSION%%/site-packages/Martel/examples/toxml.pyo
lib/%%PYTHON_VERSION%%/site-packages/Martel/formats/MDL_10_1996.py
lib/%%PYTHON_VERSION%%/site-packages/Martel/formats/MDL_10_1996.pyc
lib/%%PYTHON_VERSION%%/site-packages/Martel/formats/MDL_10_1996.pyo
@@ -92,6 +82,9 @@
lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_RecordReader.py
lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_RecordReader.pyc
lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_RecordReader.pyo
+lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_RecordReader2.py
+lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_RecordReader2.pyc
+lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_RecordReader2.pyo
lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_blastall_2_0_10.py
lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_blastall_2_0_10.pyc
lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_blastall_2_0_10.pyo
@@ -108,14 +101,21 @@
lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_swissprot38.pyc
lib/%%PYTHON_VERSION%%/site-packages/Martel/test/test_swissprot38.pyo
share/examples/martel/README
+share/examples/martel/builders/SwissProtBuilder.py
+share/examples/martel/builders/SwissProtBuilder.pyc
+share/examples/martel/builders/SwissProtBuilder.pyo
share/examples/martel/pdb1plm.ent
share/examples/martel/sample.swissprot
share/examples/martel/swissprot2html.py
+share/examples/martel/swissprot2html.pyc
+share/examples/martel/swissprot2html.pyo
share/examples/martel/test.mol
share/examples/martel/toxml.py
+share/examples/martel/toxml.pyc
+share/examples/martel/toxml.pyo
+@dirrm share/examples/martel/builders
@dirrm share/examples/martel
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Martel/test
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Martel/formats
-@dirrm lib/%%PYTHON_VERSION%%/site-packages/Martel/examples
@dirrm lib/%%PYTHON_VERSION%%/site-packages/Martel
@unexec rm -rf %D/share/doc/martel 2>/dev/null || true
>Release-Note:
>Audit-Trail:
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