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Fri, 5 Jan 2024 09:38:27 GMT (envelope-from git) Date: Fri, 5 Jan 2024 09:38:27 GMT Message-Id: <202401050938.4059cRXD050011@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 883c0d3b6207 - main - biology/ncbi-cxx-toolkit: update 27.0.0 =?utf-8?Q?=E2=86=92?= 28.0.0 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 883c0d3b620714610b65cab9f81abcc6c60b9f36 Auto-Submitted: auto-generated The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=883c0d3b620714610b65cab9f81abcc6c60b9f36 commit 883c0d3b620714610b65cab9f81abcc6c60b9f36 Author: Yuri Victorovich AuthorDate: 2024-01-05 09:32:05 +0000 Commit: Yuri Victorovich CommitDate: 2024-01-05 09:38:14 +0000 biology/ncbi-cxx-toolkit: update 27.0.0 → 28.0.0 --- biology/ncbi-cxx-toolkit/Makefile | 6 +++--- biology/ncbi-cxx-toolkit/distinfo | 6 +++--- ...jtools_edit_pubmed__citmatch_Makefile.pubmed__citmatch.app | 11 ----------- 3 files changed, 6 insertions(+), 17 deletions(-) diff --git a/biology/ncbi-cxx-toolkit/Makefile b/biology/ncbi-cxx-toolkit/Makefile index 252a5ea5a484..524c59417088 100644 --- a/biology/ncbi-cxx-toolkit/Makefile +++ b/biology/ncbi-cxx-toolkit/Makefile @@ -1,7 +1,6 @@ PORTNAME= ncbi-cxx-toolkit DISTVERSIONPREFIX= release- -DISTVERSION= 27.0.0 -PORTREVISION= 1 +DISTVERSION= 28.0.0 CATEGORIES= biology science devel MAINTAINER= yuri@FreeBSD.org @@ -13,7 +12,8 @@ LICENSE_FILE= ${WRKSRC}/doc/public/LICENSE BROKEN_armv6= platform not defined for FreeBSD arm, see https://github.com/ncbi/ncbi-cxx-toolkit-public/issues/2 -LIB_DEPENDS= libcdd.so:math/cddlib \ +LIB_DEPENDS= libbz2.so:archivers/bzip2 \ + libcdd.so:math/cddlib \ liblmdb.so:databases/lmdb \ libpcre.so:devel/pcre \ libunwind.so:devel/libunwind \ diff --git a/biology/ncbi-cxx-toolkit/distinfo b/biology/ncbi-cxx-toolkit/distinfo index 61f897e153de..d43fffbfce8d 100644 --- a/biology/ncbi-cxx-toolkit/distinfo +++ b/biology/ncbi-cxx-toolkit/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1687817071 -SHA256 (ncbi-ncbi-cxx-toolkit-public-release-27.0.0_GH0.tar.gz) = c8fb3f99c6fce4f170b381f3a7789c76a2ff1c23c094c9852e2e3de1fdc57277 -SIZE (ncbi-ncbi-cxx-toolkit-public-release-27.0.0_GH0.tar.gz) = 57187775 +TIMESTAMP = 1704429509 +SHA256 (ncbi-ncbi-cxx-toolkit-public-release-28.0.0_GH0.tar.gz) = f0300db41849bbaf690c1dfb9080f3e441fc617a004283acfb2b7b25b32ff885 +SIZE (ncbi-ncbi-cxx-toolkit-public-release-28.0.0_GH0.tar.gz) = 57007980 diff --git a/biology/ncbi-cxx-toolkit/files/patch-src_objtools_edit_pubmed__citmatch_Makefile.pubmed__citmatch.app b/biology/ncbi-cxx-toolkit/files/patch-src_objtools_edit_pubmed__citmatch_Makefile.pubmed__citmatch.app deleted file mode 100644 index 8781ac4b7d09..000000000000 --- a/biology/ncbi-cxx-toolkit/files/patch-src_objtools_edit_pubmed__citmatch_Makefile.pubmed__citmatch.app +++ /dev/null @@ -1,11 +0,0 @@ ---- src/objtools/edit/pubmed_citmatch/Makefile.pubmed_citmatch.app.orig 2023-06-26 23:22:57 UTC -+++ src/objtools/edit/pubmed_citmatch/Makefile.pubmed_citmatch.app -@@ -2,7 +2,7 @@ - - APP = pubmed_citmatch - SRC = pubmed_citmatch --LIB = $(OBJEDIT_LIBS) mlacli mla eutils uilist efetch $(SEQ_LIBS) \ -+LIB = $(OBJEDIT_LIBS) mlacli mla eutils uilist efetch seqset $(SEQ_LIBS) \ - pubmed medlars pub medline biblio general xser xconnect xutil xncbi - - LIBS = $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS)