Date: Fri, 7 Feb 2014 03:22:58 GMT From: pkg-fallout-builder@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [REL - head-i386-default][science/jmol] Failed for jmol-13.2.3 in build Message-ID: <201402070322.s173Mwm0001347@beefy1.isc.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Last committer: pawel@FreeBSD.org Ident: $FreeBSD: head/science/jmol/Makefile 333140 2013-11-07 16:53:33Z pawel $ Log URL: http://beefy1.isc.freebsd.org/bulk/head-i386-default/2014-02-06_18h13m58s/logs/jmol-13.2.3.log Build URL: http://beefy1.isc.freebsd.org/bulk/head-i386-default/2014-02-06_18h13m58s Log: ====>> Building science/jmol build started at Fri Feb 7 03:21:30 UTC 2014 port directory: /usr/ports/science/jmol building for: FreeBSD head-i386-default-job-02 11.0-CURRENT FreeBSD 11.0-CURRENT r261447 i386 maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: head/science/jmol/Makefile 333140 2013-11-07 16:53:33Z pawel $ Poudriere version: 3.1-pre ---Begin Environment--- UNAME_m=i386 UNAME_p=i386 OSVERSION=1100007 UNAME_v=FreeBSD 11.0-CURRENT r261447 UNAME_r=11.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 MASTERMNT=/usr/local/poudriere/data/build/head-i386-default/ref PKG_EXT=txz tpid=46793 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNG=1 PKGNAME=jmol-13.2.3 PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f PKG_ADD=/usr/local/sbin/pkg-static add PWD=/root MASTERNAME=head-i386-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=/poudriere/pkg-static version PKG_BIN=/usr/local/sbin/pkg-static ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for jmol-13.2.3: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- TMPDIR="/tmp" JAVA_HOME=/usr/local/openjdk7 SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --SUB_LIST-- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="1.7+" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/jmol DOCSDIR=/usr/local/share/doc/jmol EXAMPLESDIR=/usr/local/share/examples/jmol WWWDIR=/usr/local/www/jmol ETCDIR=/usr/local/etc/jmol --End SUB_LIST-- ---Begin make.conf--- ARCH=i386 MACHINE=i386 MACHINE_ARCH=i386 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ===> Cleaning for jmol-13.2.3 =======================<phase: check-config >============================ =========================================================================== =======================<phase: pkg-depends >============================ ===> jmol-13.2.3 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.2.6.txz Installing pkg-1.2.6... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of jmol-13.2.3 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> Fetching all distfiles required by jmol-13.2.3 for building =========================================================================== =======================<phase: checksum >============================ ===> Fetching all distfiles required by jmol-13.2.3 for building => SHA256 Checksum OK for Jmol-13.2.3-full.tar.gz. => SHA256 Checksum OK for selfSignedCertificate.cer. => SHA256 Checksum OK for selfSignedCertificate.store. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> Fetching all distfiles required by jmol-13.2.3 for building ===> Extracting for jmol-13.2.3 => SHA256 Checksum OK for Jmol-13.2.3-full.tar.gz. => SHA256 Checksum OK for selfSignedCertificate.cer. => SHA256 Checksum OK for selfSignedCertificate.store. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for jmol-13.2.3 =========================================================================== =======================<phase: build-depends >============================ ===> jmol-13.2.3 depends on file: /usr/local/openjdk7/bin/java - not found ===> Verifying install for /usr/local/openjdk7/bin/java in /usr/ports/java/openjdk7 ===> Installing existing package /packages/All/openjdk-7.25.15_2,1.txz Installing openjdk-7.25.15_2,1...Installing libXtst-1.2.2...Installing inputproto-2.3... done Installing libX11-1.6.2,1...Installing kbproto-1.0.6... done Installing libXau-1.0.8...Installing xproto-7.0.25... done done Installing libXdmcp-1.1.1... done Installing libxcb-1.9.3...Installing libpthread-stubs-0.3_4... done Installing libxml2-2.8.0_3... done done done Installing libXext-1.3.2,1...Installing xextproto-7.2.1... done done Installing libXi-1.7.2,1...Installing libXfixes-5.0.1...Installing fixesproto-5.0... done done done Installing recordproto-1.14.2... done done Installing libXrender-0.9.8...Installing renderproto-0.11.1... done done Installing libXt-1.1.4,1...Installing libSM-1.2.2,1...Installing libICE-1.0.8,1... done done done Installing dejavu-2.34...Installing fontconfig-2.11.0_1,1...Installing expat-2.1.0... done Installing freetype2-2.5.2... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 1 dirs /usr/local/lib/X11/fonts/local: caching, new cache contents: 0 fonts, 0 dirs /root/.local/share/fonts: skipping, no such directory /root/.fonts: skipping, no such directory /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 1 dirs /root/.local/share/fonts: skipping, no such directory /root/.fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory /root/.cache/fontconfig: not cleaning non-existent cache directory /root/.fontconfig: not cleaning non-existent cache directory fc-cache: succeeded done done Installing compat9x-i386-9.2.902000.201310... done Installing gcc-4.6.4...Installing binutils-2.24...Installing gettext-0.18.3.1... done done Installing gcc-ecj-4.5... done Installing gmp-5.1.3... done Installing mpc-1.0.2...Installing mpfr-3.1.2... done done done Installing javavmwrapper-2.4_3... done Installing java-zoneinfo-2013.i... done Installing alsa-lib-1.0.27.2_1... done done Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/lib/X11/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===> Returning to build of jmol-13.2.3 ===> jmol-13.2.3 depends on file: /usr/local/bin/ant - not found ===> Verifying install for /usr/local/bin/ant in /usr/ports/devel/apache-ant ===> Installing existing package /packages/All/apache-ant-1.9.3.txz Installing apache-ant-1.9.3...Installing openjdk6-b30,1...Installing libXpm-3.5.11... done Installing open-motif-2.3.4...Installing xbitmaps-1.1.1... done Installing libXp-1.0.2,1...Installing printproto-1.0.5... done done Installing libXmu-1.1.2,1... done Installing libXaw-1.0.12,2... done Installing libXft-2.3.1... done <snip> [java] at com.icl.saxon.aelfred.XmlParser.parseElement(XmlParser.java:1037) [java] at com.icl.saxon.aelfred.XmlParser.parseContent(XmlParser.java:1222) [java] at com.icl.saxon.aelfred.XmlParser.parseElement(XmlParser.java:1037) [java] at com.icl.saxon.aelfred.XmlParser.parseContent(XmlParser.java:1222) [java] at com.icl.saxon.aelfred.XmlParser.parseElement(XmlParser.java:1037) [java] at com.icl.saxon.aelfred.XmlParser.parseContent(XmlParser.java:1222) [java] at com.icl.saxon.aelfred.XmlParser.parseElement(XmlParser.java:1037) [java] at com.icl.saxon.aelfred.XmlParser.parseContent(XmlParser.java:1222) [java] at com.icl.saxon.aelfred.XmlParser.parseElement(XmlParser.java:1037) [java] at com.icl.saxon.aelfred.XmlParser.parseContent(XmlParser.java:1222) [java] at com.icl.saxon.aelfred.XmlParser.parseElement(XmlParser.java:1037) [java] at com.icl.saxon.aelfred.XmlParser.parseContent(XmlParser.java:1222) [java] at com.icl.saxon.aelfred.XmlParser.parseElement(XmlParser.java:1037) [java] at com.icl.saxon.aelfred.XmlParser.parseDocument(XmlParser.java:510) [java] at com.icl.saxon.aelfred.XmlParser.doParse(XmlParser.java:163) [java] at com.icl.saxon.aelfred.SAXDriver.parse(SAXDriver.java:320) [java] at com.icl.saxon.om.Builder.build(Builder.java:258) [java] at com.icl.saxon.Controller.transform(Controller.java:934) [java] at com.icl.saxon.StyleSheet.processFile(StyleSheet.java:516) [java] at com.icl.saxon.StyleSheet.doMain(StyleSheet.java:338) [java] at com.icl.saxon.StyleSheet.main(StyleSheet.java:63) [java] Java Result: 1 [echo] Generating user's guide (fr) [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/doc/JmolUserGuide_fr [java] Exception in thread "main" java.lang.OutOfMemoryError: Java heap space [java] at java.util.Arrays.copyOfRange(Arrays.java:2694) [java] at java.lang.String.<init>(String.java:203) [java] at java.lang.StringBuffer.toString(StringBuffer.java:561) [java] at java.net.URLStreamHandler.toExternalForm(URLStreamHandler.java:508) [java] at java.net.URL.toExternalForm(URL.java:921) [java] at java.net.URL.toString(URL.java:907) [java] at com.icl.saxon.aelfred.XmlParser.popInput(XmlParser.java:4057) [java] at com.icl.saxon.aelfred.XmlParser.readCh(XmlParser.java:3413) [java] at com.icl.saxon.aelfred.XmlParser.skipWhitespace(XmlParser.java:2131) [java] at com.icl.saxon.aelfred.XmlParser.parseConditionalSect(XmlParser.java:1627) [java] at com.icl.saxon.aelfred.XmlParser.parseMarkupdecl(XmlParser.java:956) [java] at com.icl.saxon.aelfred.XmlParser.parseConditionalSect(XmlParser.java:1631) [java] at com.icl.saxon.aelfred.XmlParser.parseMarkupdecl(XmlParser.java:956) [java] at com.icl.saxon.aelfred.XmlParser.parseConditionalSect(XmlParser.java:1631) [java] at com.icl.saxon.aelfred.XmlParser.parseMarkupdecl(XmlParser.java:956) [java] at com.icl.saxon.aelfred.XmlParser.parseDoctypedecl(XmlParser.java:912) [java] at com.icl.saxon.aelfred.XmlParser.parseProlog(XmlParser.java:614) [java] at com.icl.saxon.aelfred.XmlParser.parseDocument(XmlParser.java:508) [java] at com.icl.saxon.aelfred.XmlParser.doParse(XmlParser.java:163) [java] at com.icl.saxon.aelfred.SAXDriver.parse(SAXDriver.java:320) [java] at com.icl.saxon.om.Builder.build(Builder.java:258) [java] at com.icl.saxon.Controller.transform(Controller.java:934) [java] at com.icl.saxon.StyleSheet.processFile(StyleSheet.java:516) [java] at com.icl.saxon.StyleSheet.doMain(StyleSheet.java:338) [java] at com.icl.saxon.StyleSheet.main(StyleSheet.java:63) [java] Java Result: 1 jmolDevelopersGuide: [echo] Generating developer's guide [echo] Generating developer's guide (fr) [echo] Generating developer's guide (de) jmolAppletGuide: [echo] Generating applet guide [java] Exception in thread "main" java.lang.OutOfMemoryError: Java heap space [java] at java.util.Arrays.copyOf(Arrays.java:2367) [java] at java.lang.AbstractStringBuilder.expandCapacity(AbstractStringBuilder.java:130) [java] at java.lang.AbstractStringBuilder.ensureCapacityInternal(AbstractStringBuilder.java:114) [java] at java.lang.AbstractStringBuilder.append(AbstractStringBuilder.java:587) [java] at java.lang.StringBuffer.append(StringBuffer.java:332) [java] at com.icl.saxon.aelfred.XmlParser.parsePEReference(XmlParser.java:1836) [java] at com.icl.saxon.aelfred.XmlParser.readCh(XmlParser.java:3438) [java] at com.icl.saxon.aelfred.XmlParser.skipWhitespace(XmlParser.java:2131) [java] at com.icl.saxon.aelfred.XmlParser.tryWhitespace(XmlParser.java:4186) [java] at com.icl.saxon.aelfred.XmlParser.parseAttlistDecl(XmlParser.java:1441) [java] at com.icl.saxon.aelfred.XmlParser.parseMarkupdecl(XmlParser.java:945) [java] at com.icl.saxon.aelfred.XmlParser.parseConditionalSect(XmlParser.java:1631) [java] at com.icl.saxon.aelfred.XmlParser.parseMarkupdecl(XmlParser.java:956) [java] at com.icl.saxon.aelfred.XmlParser.parseConditionalSect(XmlParser.java:1631) [java] at com.icl.saxon.aelfred.XmlParser.parseMarkupdecl(XmlParser.java:956) [java] at com.icl.saxon.aelfred.XmlParser.parseConditionalSect(XmlParser.java:1631) [java] at com.icl.saxon.aelfred.XmlParser.parseMarkupdecl(XmlParser.java:956) [java] at com.icl.saxon.aelfred.XmlParser.parseConditionalSect(XmlParser.java:1631) [java] at com.icl.saxon.aelfred.XmlParser.parseMarkupdecl(XmlParser.java:956) [java] at com.icl.saxon.aelfred.XmlParser.parseConditionalSect(XmlParser.java:1631) [java] at com.icl.saxon.aelfred.XmlParser.parseMarkupdecl(XmlParser.java:956) [java] at com.icl.saxon.aelfred.XmlParser.parseDoctypedecl(XmlParser.java:912) [java] at com.icl.saxon.aelfred.XmlParser.parseProlog(XmlParser.java:614) [java] at com.icl.saxon.aelfred.XmlParser.parseDocument(XmlParser.java:508) [java] at com.icl.saxon.aelfred.XmlParser.doParse(XmlParser.java:163) [java] at com.icl.saxon.aelfred.SAXDriver.parse(SAXDriver.java:320) [java] at com.icl.saxon.om.Builder.build(Builder.java:258) [java] at com.icl.saxon.Controller.transform(Controller.java:934) [java] at com.icl.saxon.StyleSheet.processFile(StyleSheet.java:516) [java] at com.icl.saxon.StyleSheet.doMain(StyleSheet.java:338) [java] at com.icl.saxon.StyleSheet.main(StyleSheet.java:63) [java] Java Result: 1 [echo] Generating applet guide (fr) [echo] Generating applet guide (de) jmolHistory: [echo] Generating history of changes [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/doc/JmolHistory [echo] Generating history of changes (fr) [echo] Generating history of changes (nl) [echo] Generating history of changes (ro) javadoc: [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/javadoc [javadoc] Generating Javadoc [javadoc] Javadoc execution [javadoc] Loading source files for package org.jmol.adapter.readers.cifpdb... [javadoc] Loading source files for package org.jmol.adapter.readers.molxyz... [javadoc] Loading source files for package org.jmol.adapter.readers.more... [javadoc] Loading source files for package org.jmol.adapter.readers.pymol... [javadoc] Loading source files for package org.jmol.adapter.readers.quantum... [javadoc] Loading source files for package org.jmol.adapter.readers.simple... [javadoc] Loading source files for package org.jmol.adapter.readers.xml... [javadoc] Loading source files for package org.jmol.adapter.readers.xtal... [javadoc] Loading source files for package org.jmol.adapter.smarter... [javadoc] Loading source files for package org.jmol.api... [javadoc] Loading source files for package org.jmol.applet... [javadoc] Loading source files for package org.jmol.appletjs... [javadoc] Loading source files for package org.jmol.atomdata... [javadoc] Loading source files for package org.jmol.awt... [javadoc] Loading source files for package org.jmol.awtjs... [javadoc] Loading source files for package org.jmol.awtjs2d... [javadoc] Loading source files for package org.jmol.bspt... [javadoc] Loading source files for package org.jmol.console... [javadoc] Loading source files for package org.jmol.consolejs... [javadoc] Loading source files for package org.jmol.constant... [javadoc] Loading source files for package org.jmol.export... [javadoc] Loading source files for package org.jmol.export.dialog... [javadoc] Loading source files for package org.jmol.export.history... [javadoc] Loading source files for package org.jmol.export.image... [javadoc] Loading source files for package org.jmol.exportjs... [javadoc] Loading source files for package org.jmol.g3d... [javadoc] Loading source files for package org.jmol.geodesic... [javadoc] Loading source files for package org.jmol.i18n... [javadoc] Loading source files for package org.jmol.io... [javadoc] Loading source files for package org.jmol.io2... [javadoc] Loading source files for package org.jmol.jvxl.api... [javadoc] Loading source files for package org.jmol.jvxl.calc... [javadoc] Loading source files for package org.jmol.jvxl.data... [javadoc] Loading source files for package org.jmol.jvxl.readers... [javadoc] Loading source files for package org.jmol.minimize... [javadoc] Loading source files for package org.jmol.minimize.forcefield... [javadoc] 1 error [javadoc] javadoc: error - java.lang.OutOfMemoryError: Please increase memory. [javadoc] For example, on the JDK Classic or HotSpot VMs, add the option -J-Xmx [javadoc] such as -J-Xmx32m. doc: classes: [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/classes [javac] Compiling 727 source files to /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build/classes [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 [javac] [javac] [javac] The system is out of resources. [javac] Consult the following stack trace for details. [javac] java.lang.OutOfMemoryError: Java heap space [javac] at com.sun.tools.javac.tree.TreeMaker.Import(TreeMaker.java:141) [javac] at com.sun.tools.javac.parser.JavacParser.importDeclaration(JavacParser.java:2338) [javac] at com.sun.tools.javac.parser.JavacParser.parseCompilationUnit(JavacParser.java:2287) [javac] at com.sun.tools.javac.main.JavaCompiler.parse(JavaCompiler.java:595) [javac] at com.sun.tools.javac.main.JavaCompiler.parse(JavaCompiler.java:632) [javac] at com.sun.tools.javac.main.JavaCompiler.parseFiles(JavaCompiler.java:909) [javac] at com.sun.tools.javac.main.JavaCompiler.compile(JavaCompiler.java:824) [javac] at com.sun.tools.javac.main.Main.compile(Main.java:439) [javac] at com.sun.tools.javac.main.Main.compile(Main.java:353) [javac] at com.sun.tools.javac.main.Main.compile(Main.java:342) [javac] at com.sun.tools.javac.main.Main.compile(Main.java:333) [javac] at com.sun.tools.javac.Main.compile(Main.java:76) [javac] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [javac] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) [javac] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [javac] at java.lang.reflect.Method.invoke(Method.java:606) [javac] at org.apache.tools.ant.taskdefs.compilers.Javac13.execute(Javac13.java:56) [javac] at org.apache.tools.ant.taskdefs.Javac.compile(Javac.java:1153) [javac] at org.apache.tools.ant.taskdefs.Javac.execute(Javac.java:930) [javac] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:292) [javac] at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source) [javac] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [javac] at java.lang.reflect.Method.invoke(Method.java:606) [javac] at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106) [javac] at org.apache.tools.ant.Task.perform(Task.java:348) [javac] at org.apache.tools.ant.Target.execute(Target.java:435) [javac] at org.apache.tools.ant.Target.performTasks(Target.java:456) [javac] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1393) [javac] at org.apache.tools.ant.Project.executeTarget(Project.java:1364) [javac] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41) [javac] at org.apache.tools.ant.Project.executeTargets(Project.java:1248) [javac] at org.apache.tools.ant.Main.runBuild(Main.java:851) BUILD FAILED /wrkdirs/usr/ports/science/jmol/work/jmol-13.2.3/build.xml:228: Compile failed; see the compiler error output for details. Total time: 47 seconds *** Error code 1 Stop. make: stopped in /usr/ports/science/jmol ===> Cleaning for jmol-13.2.3
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