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Date:      Sun, 9 Feb 2020 05:57:04 +0000 (UTC)
From:      Yuri Victorovich <yuri@FreeBSD.org>
To:        ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org
Subject:   svn commit: r525625 - head/biology/gatk
Message-ID:  <202002090557.0195v4vA065041@repo.freebsd.org>

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Author: yuri
Date: Sun Feb  9 05:57:04 2020
New Revision: 525625
URL: https://svnweb.freebsd.org/changeset/ports/525625

Log:
  biology/gatk: Change from gradle5 to gradle6

Modified:
  head/biology/gatk/Makefile
  head/biology/gatk/distinfo

Modified: head/biology/gatk/Makefile
==============================================================================
--- head/biology/gatk/Makefile	Sun Feb  9 05:32:45 2020	(r525624)
+++ head/biology/gatk/Makefile	Sun Feb  9 05:57:04 2020	(r525625)
@@ -2,6 +2,7 @@
 
 PORTNAME=	gatk
 DISTVERSION=	4.1.4.1
+PORTREVISION=	1
 CATEGORIES=	biology java
 EXTRACT_ONLY=	${DISTNAME}${EXTRACT_SUFX}
 
@@ -11,7 +12,7 @@ COMMENT=	Variant discovery in high-throughput sequenci
 LICENSE=	BSD3CLAUSE
 LICENSE_FILE=	${WRKSRC}/LICENSE.TXT
 
-BUILD_DEPENDS=	gradle5:devel/gradle5
+BUILD_DEPENDS=	gradle:devel/gradle
 
 USES=		gettext-runtime
 USE_GITHUB=	yes
@@ -23,7 +24,7 @@ SUB_LIST=	PORTVERSION=${PORTVERSION} JAVA=${JAVA}
 
 NO_ARCH=	yes
 
-DEPS_CACHE_DIR=	/tmp # should be ${WRKDIR}, but workaround for the gradle bug that dependency cache is not relocable: https://github.com/gradle/gradle/issues/1338
+DEPS_CACHE_DIR=	${WRKDIR}
 
 PLIST_FILES=	bin/${PORTNAME} \
 		${JAVAJARDIR}/GenomeAnalysisTK-${PORTVERSION}.jar
@@ -52,7 +53,7 @@ post-extract: # need a separate extract step because t
 
 
 do-build:
-	@cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} gradle5 \
+	@cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} gradle \
 		--gradle-user-home ${DEPS_CACHE_DIR}/gradle-${PORTNAME} --project-cache-dir ${DEPS_CACHE_DIR}/gradle-${PORTNAME} \
 		${GRADLE_ARGS} --build-cache localJar
 

Modified: head/biology/gatk/distinfo
==============================================================================
--- head/biology/gatk/distinfo	Sun Feb  9 05:32:45 2020	(r525624)
+++ head/biology/gatk/distinfo	Sun Feb  9 05:57:04 2020	(r525625)
@@ -1,5 +1,5 @@
-TIMESTAMP = 1579483921
-SHA256 (gatk-4.1.4.1-deps.tar.gz) = b634903f674aa1550039c4434e0ef0efab75d509e80d5073a2b5f3a0120fd68e
-SIZE (gatk-4.1.4.1-deps.tar.gz) = 253677476
+TIMESTAMP = 1581225116
+SHA256 (gatk-4.1.4.1-deps.tar.gz) = 498a0f827531b122ed8f7e789232548a6a4e61c0629ef103d90d06bed787db9e
+SIZE (gatk-4.1.4.1-deps.tar.gz) = 253086649
 SHA256 (broadinstitute-gatk-4.1.4.1_GH0.tar.gz) = 54129c3973ad7f1c501ecd7c841d15cd09fdd0d5ca3057810c17d7b7b9d88eb7
 SIZE (broadinstitute-gatk-4.1.4.1_GH0.tar.gz) = 64600068



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