Date: Sun, 9 Feb 2020 05:57:04 +0000 (UTC) From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r525625 - head/biology/gatk Message-ID: <202002090557.0195v4vA065041@repo.freebsd.org>
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Author: yuri Date: Sun Feb 9 05:57:04 2020 New Revision: 525625 URL: https://svnweb.freebsd.org/changeset/ports/525625 Log: biology/gatk: Change from gradle5 to gradle6 Modified: head/biology/gatk/Makefile head/biology/gatk/distinfo Modified: head/biology/gatk/Makefile ============================================================================== --- head/biology/gatk/Makefile Sun Feb 9 05:32:45 2020 (r525624) +++ head/biology/gatk/Makefile Sun Feb 9 05:57:04 2020 (r525625) @@ -2,6 +2,7 @@ PORTNAME= gatk DISTVERSION= 4.1.4.1 +PORTREVISION= 1 CATEGORIES= biology java EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX} @@ -11,7 +12,7 @@ COMMENT= Variant discovery in high-throughput sequenci LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.TXT -BUILD_DEPENDS= gradle5:devel/gradle5 +BUILD_DEPENDS= gradle:devel/gradle USES= gettext-runtime USE_GITHUB= yes @@ -23,7 +24,7 @@ SUB_LIST= PORTVERSION=${PORTVERSION} JAVA=${JAVA} NO_ARCH= yes -DEPS_CACHE_DIR= /tmp # should be ${WRKDIR}, but workaround for the gradle bug that dependency cache is not relocable: https://github.com/gradle/gradle/issues/1338 +DEPS_CACHE_DIR= ${WRKDIR} PLIST_FILES= bin/${PORTNAME} \ ${JAVAJARDIR}/GenomeAnalysisTK-${PORTVERSION}.jar @@ -52,7 +53,7 @@ post-extract: # need a separate extract step because t do-build: - @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} gradle5 \ + @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} gradle \ --gradle-user-home ${DEPS_CACHE_DIR}/gradle-${PORTNAME} --project-cache-dir ${DEPS_CACHE_DIR}/gradle-${PORTNAME} \ ${GRADLE_ARGS} --build-cache localJar Modified: head/biology/gatk/distinfo ============================================================================== --- head/biology/gatk/distinfo Sun Feb 9 05:32:45 2020 (r525624) +++ head/biology/gatk/distinfo Sun Feb 9 05:57:04 2020 (r525625) @@ -1,5 +1,5 @@ -TIMESTAMP = 1579483921 -SHA256 (gatk-4.1.4.1-deps.tar.gz) = b634903f674aa1550039c4434e0ef0efab75d509e80d5073a2b5f3a0120fd68e -SIZE (gatk-4.1.4.1-deps.tar.gz) = 253677476 +TIMESTAMP = 1581225116 +SHA256 (gatk-4.1.4.1-deps.tar.gz) = 498a0f827531b122ed8f7e789232548a6a4e61c0629ef103d90d06bed787db9e +SIZE (gatk-4.1.4.1-deps.tar.gz) = 253086649 SHA256 (broadinstitute-gatk-4.1.4.1_GH0.tar.gz) = 54129c3973ad7f1c501ecd7c841d15cd09fdd0d5ca3057810c17d7b7b9d88eb7 SIZE (broadinstitute-gatk-4.1.4.1_GH0.tar.gz) = 64600068
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