Date: Sun, 23 Dec 2018 17:07:34 GMT From: pkg-fallout@FreeBSD.org To: pi@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - head-amd64-default][biology/seqtools] Failed for seqtools-4.44.1_3 in build Message-ID: <201812231707.wBNH7Y9A096096@beefy12.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: pi@FreeBSD.org Last committer: gerald@FreeBSD.org Ident: $FreeBSD: head/biology/seqtools/Makefile 487272 2018-12-12 01:35:33Z gerald $ Log URL: http://beefy12.nyi.freebsd.org/data/head-amd64-default/p488034_s342358/logs/seqtools-4.44.1_3.log Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p488034_s342358 Log: =>> Building biology/seqtools build started at Sun Dec 23 17:04:31 UTC 2018 port directory: /usr/ports/biology/seqtools package name: seqtools-4.44.1_3 building for: FreeBSD head-amd64-default-job-19 13.0-CURRENT FreeBSD 13.0-CURRENT 1300005 amd64 maintained by: pi@FreeBSD.org Makefile ident: $FreeBSD: head/biology/seqtools/Makefile 487272 2018-12-12 01:35:33Z gerald $ Poudriere version: 3.2.8 Host OSVERSION: 1300002 Jail OSVERSION: 1300005 Job Id: 19 !!! Jail is newer than host. (Jail: 1300005, Host: 1300002) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300005 UNAME_v=FreeBSD 13.0-CURRENT 1300005 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8 MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for seqtools-4.44.1_3: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- pi@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqtools/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqtools/work HOME=/wrkdirs/usr/ports/biology/seqtools/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqtools/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqtools/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqtools/work HOME=/wrkdirs/usr/ports/biology/seqtools/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqtools/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -L/usr/local/lib -lexecinfo -lcurl -lsqlite3 -lm -fstack-protector " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/seqtools" EXAMPLESDIR="share/examples/seqtools" DATADIR="share/seqtools" WWWDIR="www/seqtools" ETCDIR="etc/seqtools" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seqtools DOCSDIR=/usr/local/share/doc/seqtools EXAMPLESDIR=/usr/local/share/examples/seqtools WWWDIR=/usr/local/www/seqtools ETCDIR=/usr/local/etc/seqtools --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 7.0.1 (tags/RELEASE_701/final 349250) (based on LLVM 7.0.1) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 7.0.1 (tags/RELEASE_701/final 349250) (based on LLVM 7.0.1) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 7.0.1 (tags/RELEASE_701/final 349250) (based on LLVM 7.0.1) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300005 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> seqtools-4.44.1_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [head-amd64-default-job-19] Installing pkg-1.10.5_5... [head-amd64-default-job-19] Extracting pkg-1.10.5_5: .......... done ===> seqtools-4.44.1_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of seqtools-4.44.1_3 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by seqtools-4.44.1_3 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by seqtools-4.44.1_3 for building => SHA256 Checksum OK for seqtools-4.44.1.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by seqtools-4.44.1_3 for building ===> Extracting for seqtools-4.44.1_3 => SHA256 Checksum OK for seqtools-4.44.1.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for seqtools-4.44.1_3 ===> Applying FreeBSD patches for seqtools-4.44.1_3 =========================================================================== =======================<phase: build-depends >============================ <snip> mv -f .deps/libblatSrc_la-vcf.Tpo .deps/libblatSrc_la-vcf.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I../../src/include -I../../src/include/blatSrc -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT libblatSrc_la-vcfBits.lo -MD -MP -MF .deps/libblatSrc_la-vcfBits.Tpo -c -o libblatSrc_la-vcfBits.lo `test -f 'lib/vcfBits.c' || echo './'`lib/vcfBits.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I../../src/include -I../../src/include/blatSrc -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT libblatSrc_la-vcfBits.lo -MD -MP -MF .deps/libblatSrc_la-vcfBits.Tpo -c lib/vcfBits.c -o libblatSrc_la-vcfBits.o mv -f .deps/libblatSrc_la-vcfBits.Tpo .deps/libblatSrc_la-vcfBits.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I../../src/include -I../../src/include/blatSrc -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT libblatSrc_la-verbose.lo -MD -MP -MF .deps/libblatSrc_la-verbose.Tpo -c -o libblatSrc_la-verbose.lo `test -f 'lib/verbose.c' || echo './'`lib/verbose.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I../../src/include -I../../src/include/blatSrc -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT libblatSrc_la-verbose.lo -MD -MP -MF .deps/libblatSrc_la-verbose.Tpo -c lib/verbose.c -o libblatSrc_la-verbose.o mv -f .deps/libblatSrc_la-verbose.Tpo .deps/libblatSrc_la-verbose.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I../../src/include -I../../src/include/blatSrc -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT libblatSrc_la-wildcmp.lo -MD -MP -MF .deps/libblatSrc_la-wildcmp.Tpo -c -o libblatSrc_la-wildcmp.lo `test -f 'lib/wildcmp.c' || echo './'`lib/wildcmp.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I../../src/include -I../../src/include/blatSrc -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT libblatSrc_la-wildcmp.lo -MD -MP -MF .deps/libblatSrc_la-wildcmp.Tpo -c lib/wildcmp.c -o libblatSrc_la-wildcmp.o mv -f .deps/libblatSrc_la-wildcmp.Tpo .deps/libblatSrc_la-wildcmp.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I../../src/include -I../../src/include/blatSrc -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT libblatSrc_la-wormdna.lo -MD -MP -MF .deps/libblatSrc_la-wormdna.Tpo -c -o libblatSrc_la-wormdna.lo `test -f 'lib/wormdna.c' || echo './'`lib/wormdna.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I../../src/include -I../../src/include/blatSrc -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT libblatSrc_la-wormdna.lo -MD -MP -MF .deps/libblatSrc_la-wormdna.Tpo -c lib/wormdna.c -o libblatSrc_la-wormdna.o mv -f .deps/libblatSrc_la-wormdna.Tpo .deps/libblatSrc_la-wormdna.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I../../src/include -I../../src/include/blatSrc -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT libblatSrc_la-xAli.lo -MD -MP -MF .deps/libblatSrc_la-xAli.Tpo -c -o libblatSrc_la-xAli.lo `test -f 'lib/xAli.c' || echo './'`lib/xAli.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I../../src/include -I../../src/include/blatSrc -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT libblatSrc_la-xAli.lo -MD -MP -MF .deps/libblatSrc_la-xAli.Tpo -c lib/xAli.c -o libblatSrc_la-xAli.o mv -f .deps/libblatSrc_la-xAli.Tpo .deps/libblatSrc_la-xAli.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I../../src/include -I../../src/include/blatSrc -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT libblatSrc_la-xa.lo -MD -MP -MF .deps/libblatSrc_la-xa.Tpo -c -o libblatSrc_la-xa.lo `test -f 'lib/xa.c' || echo './'`lib/xa.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I../../src/include -I../../src/include/blatSrc -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT libblatSrc_la-xa.lo -MD -MP -MF .deps/libblatSrc_la-xa.Tpo -c lib/xa.c -o libblatSrc_la-xa.o mv -f .deps/libblatSrc_la-xa.Tpo .deps/libblatSrc_la-xa.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread 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-I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I../../src/include -I../../src/include/blatSrc -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT libblatSrc_la-xmlEscape.lo -MD -MP -MF .deps/libblatSrc_la-xmlEscape.Tpo -c -o libblatSrc_la-xmlEscape.lo `test -f 'lib/xmlEscape.c' || echo './'`lib/xmlEscape.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I../../src/include -I../../src/include/blatSrc -O2 -pipe -I/usr/local/include 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-I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I../../src/include -I../../src/include/blatSrc -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT libblatSrc_la-zlibFace.lo -MD -MP -MF .deps/libblatSrc_la-zlibFace.Tpo -c lib/zlibFace.c -o libblatSrc_la-zlibFace.o mv -f .deps/libblatSrc_la-zlibFace.Tpo .deps/libblatSrc_la-zlibFace.Plo /bin/sh ../../libtool --tag=CC --mode=link cc -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -L/usr/local/lib -lexecinfo -lcurl -lsqlite3 -lm -fstack-protector -o libblatSrc.la libblatSrc_la-aliType.lo libblatSrc_la-annoAssembly.lo libblatSrc_la-annoFilter.lo libblatSrc_la-annoFormatTab.lo libblatSrc_la-annoFormatter.lo libblatSrc_la-annoGrateWig.lo libblatSrc_la-annoGrator.lo libblatSrc_la-annoGratorQuery.lo libblatSrc_la-annoOption.lo libblatSrc_la-annoRow.lo libblatSrc_la-annoStreamBigBed.lo libblatSrc_la-annoStreamBigWig.lo libblatSrc_la-annoStreamTab.lo 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libblatSrc_la-hmmPfamParse.lo libblatSrc_la-hmmstats.lo libblatSrc_la-htmlPage.lo libblatSrc_la-htmshell.lo libblatSrc_la-https.lo libblatSrc_la-intExp.lo libblatSrc_la-intValTree.lo libblatSrc_la-internet.lo libblatSrc_la-itsa.lo libblatSrc_la-iupac.lo libblatSrc_la-jointalign.lo libblatSrc_la-jpegSize.lo libblatSrc_la-jsonParse.lo libblatSrc_la-jsonWrite.lo libblatSrc_la-keys.lo libblatSrc_la-knetUdc .lo libblatSrc_la-kxTok.lo libblatSrc_la-lineFileOnBigBed.lo libblatSrc_la-linefile.lo libblatSrc_la-localmem.lo libblatSrc_la-log.lo libblatSrc_la-longToList.lo libblatSrc_la-maf.lo libblatSrc_la-mafFromAxt.lo libblatSrc_la-mafScore.lo libblatSrc_la-mailViaPipe.lo libblatSrc_la-md5.lo libblatSrc_la-memalloc.lo libblatSrc_la-memgfx.lo libblatSrc_la-meta.lo libblatSrc_la-metaWig.lo libblatSrc_la-mgCircle.lo libblatSrc_la-mgPolygon.lo libblatSrc_la-mime.lo libblatSrc_la-net.lo libblatSrc_la-nib.lo libblatSrc_la-nibTwo.lo libblatSrc_la-nt4.lo libblatSrc_la-numObscure.lo 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libblatSrc_la-xmlEscape.lo libblatSrc_la-xp.lo libblatSrc_la-zlibFace.lo libtool: link: ar cru .libs/libblatSrc.a libblatSrc_la-aliType.o libblatSrc_la-annoAssembly.o libblatSrc_la-annoFilter.o libblatSrc_la-annoFormatTab.o libblatSrc_la-annoFormatter.o libblatSrc_la-annoGrateWig.o libblatSrc_la-annoGrator.o libblatSrc_la-annoGratorQuery.o libblatSrc_la-annoOption.o libblatSrc_la-annoRow.o libblatSrc_la-annoStreamBigBed.o libblatSrc_la-annoStreamBigWig.o libblatSrc_la-annoStreamTab.o libblatSrc_la-annoStreamVcf.o libblatSrc_la-annoStreamer.o libblatSrc_la-apacheLog.o libblatSrc_la-asParse.o libblatSrc_la-axt.o libblatSrc_la-axtAffine.o libblatSrc_la-bPlusTree.o libblatSrc_la-bamFile.o libblatSrc_la-base64.o libblatSrc_la-basicBed.o libblatSrc_la-bbiRead.o libblatSrc_la-bbiWrite.o libblatSrc_la-bigBed.o libblatSrc_la-binRange.o libblatSrc_la-bits.o libblatSrc_la-blastOut.o libblatSrc_la-blastParse.o libblatSrc_la-boxClump.o libblatSrc_la-boxLump.o libblatSrc_la-bwgCreate.o libblatSrc_la-bwgQuery.o libblatSrc_la-bwgValsOnChrom.o libblatSrc_la-cda.o libblat Src_la-chain.o libblatSrc_la-chainBlock.o libblatSrc_la-chainConnect.o libblatSrc_la-chainToAxt.o libblatSrc_la-chainToPsl.o libblatSrc_la-cheapcgi.o libblatSrc_la-cirTree.o libblatSrc_la-codebias.o libblatSrc_la-colHash.o libblatSrc_la-common.o libblatSrc_la-correlate.o libblatSrc_la-crTree.o libblatSrc_la-dgRange.o libblatSrc_la-diGraph.o libblatSrc_la-dlist.o libblatSrc_la-dnaLoad.o libblatSrc_la-dnaMarkov.o libblatSrc_la-dnaMotif.o libblatSrc_la-dnaseq.o libblatSrc_la-dnautil.o libblatSrc_la-dtdParse.o libblatSrc_la-dyOut.o libblatSrc_la-dystring.o libblatSrc_la-elmTree.o libblatSrc_la-emblParse.o libblatSrc_la-errAbort.o libblatSrc_la-errCatch.o libblatSrc_la-fa.o libblatSrc_la-ffAli.o libblatSrc_la-ffScore.o libblatSrc_la-fieldedTable.o libblatSrc_la-filePath.o libblatSrc_la-fixColor.o libblatSrc_la-flydna.o libblatSrc_la-fof.o libblatSrc_la-fq.o libblatSrc_la-fuzzyShow.o libblatSrc_la-gapCalc.o libblatSrc_la-gdf.o libblatSrc_la-gemfont.o libblatSrc_la-genomeRangeTree.o libbla tSrc_la-gfNet.o libblatSrc_la-gff.o libblatS! rc_la-gff3.o libblatSrc_la-gfxPoly.o libblatSrc_la-gifLabel.o libblatSrc_la-gifcomp.o libblatSrc_la-gifdecomp.o libblatSrc_la-gifread.o libblatSrc_la-gifwrite.o libblatSrc_la-hacTree.o libblatSrc_la-hash.o libblatSrc_la-hex.o libblatSrc_la-histogram.o libblatSrc_la-hmac.o libblatSrc_la-hmmPfamParse.o libblatSrc_la-hmmstats.o libblatSrc_la-htmlPage.o libblatSrc_la-htmshell.o libblatSrc_la-https.o libblatSrc_la-intExp.o libblatSrc_la-intValTree.o libblatSrc_la-internet.o libblatSrc_la-itsa.o libblatSrc_la-iupac.o libblatSrc_la-jointalign.o libblatSrc_la-jpegSize.o libblatSrc_la-jsonParse.o libblatSrc_la-jsonWrite.o libblatSrc_la-keys.o libblatSrc_la-knetUdc.o libblatSrc_la-kxTok.o libblatSrc_la-lineFileOnBigBed.o libblatSrc_la-linefile.o libblatSrc_la-localmem.o libblatSrc_la-log.o libblatSrc_la-longToList.o libblatSrc_la-maf.o libblatSrc_la-mafFromAxt.o libblatSrc_la-mafScore.o libblatSrc_la-mailViaPipe.o libblatSrc_la-md5.o libblatSrc_la-memalloc.o libblatSrc_la-memgfx.o libblatSrc_ la-meta.o libblatSrc_la-metaWig.o libblatSrc_la-mgCircle.o libblatSrc_la-mgPolygon.o libblatSrc_la-mime.o libblatSrc_la-net.o libblatSrc_la-nib.o libblatSrc_la-nibTwo.o libblatSrc_la-nt4.o libblatSrc_la-numObscure.o libblatSrc_la-obscure.o libblatSrc_la-oldGff.o libblatSrc_la-oligoTm.o libblatSrc_la-options.o libblatSrc_la-pairDistance.o libblatSrc_la-pairHmm.o libblatSrc_la-paraFetch.o libblatSrc_la-peakCluster.o libblatSrc_la-phyloTree.o libblatSrc_la-pipeline.o libblatSrc_la-pngwrite.o libblatSrc_la-portimpl.o libblatSrc_la-psGfx.o libblatSrc_la-psPoly.o libblatSrc_la-pscmGfx.o libblatSrc_la-psl.o libblatSrc_la-pslGenoShow.o libblatSrc_la-pslShow.o libblatSrc_la-pslTbl.o libblatSrc_la-pslTransMap.o libblatSrc_la-pthreadDoList.o libblatSrc_la-pthreadWrap.o libblatSrc_la-qa.o libblatSrc_la-quickHeap.o libblatSrc_la-quotedP.o libblatSrc_la-ra.o libblatSrc_la-raToStruct.o libblatSrc_la-rainbow.o libblatSrc_la-rangeTree.o libblatSrc_la-rbTree.o libblatSrc_la-regexHelper.o libblatSrc_l a-repMask.o libblatSrc_la-rle.o libblatSrc_l! a-rnautil! .o libblatSrc_la-rqlEval.o libblatSrc_la-rqlParse.o libblatSrc_la-rudp.o libblatSrc_la-scoreWindow.o libblatSrc_la-seg.o libblatSrc_la-seqOut.o libblatSrc_la-seqStats.o libblatSrc_la-servBrcMcw.o libblatSrc_la-servCrunx.o libblatSrc_la-servcis.o libblatSrc_la-servcl.o libblatSrc_la-servmsII.o libblatSrc_la-servpws.o libblatSrc_la-shaRes.o libblatSrc_la-slog.o libblatSrc_la-snof.o libblatSrc_la-snofmake.o libblatSrc_la-snofsig.o libblatSrc_la-spaceSaver.o libblatSrc_la-spacedColumn.o libblatSrc_la-spacedSeed.o libblatSrc_la-splatAli.o libblatSrc_la-sqlList.o libblatSrc_la-sqlNum.o libblatSrc_la-subText.o libblatSrc_la-sufa.o libblatSrc_la-sufx.o libblatSrc_la-synQueue.o libblatSrc_la-tabRow.o libblatSrc_la-textOut.o libblatSrc_la-tokenizer.o libblatSrc_la-trix.o libblatSrc_la-twoBit.o libblatSrc_la-udc.o libblatSrc_la-vGfx.o libblatSrc_la-vGif.o libblatSrc_la-vPng.o libblatSrc_la-vcf.o libblatSrc_la-vcfBits.o libblatSrc_la-verbose.o libblatSrc_la-wildcmp.o libblatSrc_la-wormdna.o lib blatSrc_la-xAli.o libblatSrc_la-xa.o libblatSrc_la-xap.o libblatSrc_la-xenshow.o libblatSrc_la-xmlEscape.o libblatSrc_la-xp.o libblatSrc_la-zlibFace.o libtool: link: ranlib .libs/libblatSrc.a libtool: link: ( cd ".libs" && rm -f "libblatSrc.la" && ln -s "../libblatSrc.la" "libblatSrc.la" ) /bin/sh ./libtool --tag=CC --mode=link cc -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -L/usr/local/lib -lexecinfo -lcurl -lsqlite3 -lm -fstack-protector -o libgbtools.la -rpath /usr/local/lib src/gbtoolsCurl/libgbtoolsCurl.la src/gbtoolsTrackhub/libgbtoolsTrackhub.la src/gbtoolsGUI/libgbtoolsGUI.la src/gbtoolsPfetch/libgbtoolsPfetch.la src/gbtoolsUtils/libgbtoolsUtils.la src/jsoncpp/libjsoncpp.la src/blatSrc/libblatSrc.la libtool: link: (cd .libs/libgbtools.lax/libgbtoolsCurl.a && ar x "/wrkdirs/usr/ports/biology/seqtools/work/seqtools-4.44.1/gbtools/src/gbtoolsCurl/.libs/libgbtoolsCurl.a") libtool: link: (cd .libs/libgbtools.lax/libgbtoolsTrackhub.a && ar x "/wrkdirs/usr/ports/biology/seqtools/work/seqtools-4.44.1/gbtools/src/gbtoolsTrackhub/.libs/libgbtoolsTrackhub.a") libtool: link: (cd .libs/libgbtools.lax/libgbtoolsGUI.a && ar x "/wrkdirs/usr/ports/biology/seqtools/work/seqtools-4.44.1/gbtools/src/gbtoolsGUI/.libs/libgbtoolsGUI.a") libtool: link: (cd .libs/libgbtools.lax/libgbtoolsPfetch.a && ar x "/wrkdirs/usr/ports/biology/seqtools/work/seqtools-4.44.1/gbtools/src/gbtoolsPfetch/.libs/libgbtoolsPfetch.a") libtool: link: (cd .libs/libgbtools.lax/libgbtoolsUtils.a && ar x "/wrkdirs/usr/ports/biology/seqtools/work/seqtools-4.44.1/gbtools/src/gbtoolsUtils/.libs/libgbtoolsUtils.a") libtool: link: (cd .libs/libgbtools.lax/libjsoncpp.a && ar x "/wrkdirs/usr/ports/biology/seqtools/work/seqtools-4.44.1/gbtools/src/jsoncpp/.libs/libjsoncpp.a") libtool: link: (cd .libs/libgbtools.lax/libblatSrc.a && ar x "/wrkdirs/usr/ports/biology/seqtools/work/seqtools-4.44.1/gbtools/src/blatSrc/.libs/libblatSrc.a") libtool: link: ar cru .libs/libgbtools.a .libs/libgbtools.lax/libgbtoolsCurl.a/gbtoolsCurl.o .libs/libgbtools.lax/libgbtoolsTrackhub.a/gbtoolsTrackhub.o .libs/libgbtools.lax/libgbtoolsGUI.a/gbtoolsGUI.o .libs/libgbtools.lax/libgbtoolsPfetch.a/gbtoolsPfetch.o .libs/libgbtools.lax/libgbtoolsPfetch.a/gbtoolsPfetchHttp.o .libs/libgbtools.lax/libgbtoolsPfetch.a/gbtoolsPfetchPipe.o .libs/libgbtools.lax/libgbtoolsUtils.a/gbtoolsUtils.o .libs/libgbtools.lax/libjsoncpp.a/jsoncpp.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-aliType.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-annoAssembly.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-annoFilter.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-annoFormatTab.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-annoFormatter.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-annoGrateWig.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-annoGrator.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-annoGratorQuery.o .libs/libgbto ols.lax/libblatSrc.a/libblatSrc_la-annoOption.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-annoRow.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-annoStreamBigBed.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-annoStreamBigWig.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-annoStreamTab.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-annoStreamVcf.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-annoStreamer.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-apacheLog.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-asParse.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-axt.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-axtAffine.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-bPlusTree.o 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.libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-chainBlock.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-chainConnect.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-chainToAxt.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-chainToPsl.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-cheapcgi.o .libs/libgbtools. lax/libblatSrc.a/libblatSrc_la-cirTree.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-codebias.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-colHash.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-common.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-correlate.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-crTree.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-dgRange.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-diGraph.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-dlist.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-dnaLoad.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-dnaMarkov.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-dnaMotif.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-dnaseq.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-dnautil.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-dtdParse.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-dyOut.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-dystring.o .libs/libgbtools.lax/libbla tSrc.a/libblatSrc_la-elmTree.o .libs/libgbto! ols.lax/l! ibblatSrc.a/libblatSrc_la-emblParse.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-errAbort.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-errCatch.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-fa.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-ffAli.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-ffScore.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-fieldedTable.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-filePath.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-fixColor.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-flydna.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-fof.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-fq.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-fuzzyShow.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-gapCalc.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-gdf.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-gemfont.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-genomeRangeTree.o .libs/libgbtools.lax/libblatSrc.a /libblatSrc_la-gfNet.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-gff.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-gff3.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-gfxPoly.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-gifLabel.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-gifcomp.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-gifdecomp.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-gifread.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-gifwrite.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-hacTree.o 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.libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-phyloTree.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-pipeline.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-pngwrite.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-portimpl.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-psGfx.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-psPoly.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-pscmGfx.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-psl.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-pslGenoShow.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-pslShow.o .libs/ libgbtools.lax/libblatSrc.a/libblatSrc_la-pslTbl.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-pslTransMap.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-pthreadDoList.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-pthreadWrap.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-qa.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-quickHeap.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-quotedP.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-ra.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-raToStruct.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-rainbow.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-rangeTree.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-rbTree.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-regexHelper.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-repMask.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-rle.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-rnautil.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-rqlEval.o .libs/li bgbtools.lax/libblatSrc.a/libblatSrc_la-rqlP! arse.o .l! ibs/libgbtools.lax/libblatSrc.a/libblatSrc_la-rudp.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-scoreWindow.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-seg.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-seqOut.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-seqStats.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-servBrcMcw.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-servCrunx.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-servcis.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-servcl.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-servmsII.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-servpws.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-shaRes.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-slog.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-snof.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-snofmake.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-snofsig.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-spaceSaver.o .libs/libgbtoo ls.lax/libblatSrc.a/libblatSrc_la-spacedColumn.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-spacedSeed.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-splatAli.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-sqlList.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-sqlNum.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-subText.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-sufa.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-sufx.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-synQueue.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-tabRow.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-textOut.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-tokenizer.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-trix.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-twoBit.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-udc.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-vGfx.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-vGif.o .libs/libgbtools.lax/libblatSrc.a/l ibblatSrc_la-vPng.o .libs/libgbtools.lax/lib! blatSrc.a! /libblatSrc_la-vcf.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-vcfBits.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-verbose.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-wildcmp.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-wormdna.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-xAli.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-xa.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-xap.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-xenshow.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-xmlEscape.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-xp.o .libs/libgbtools.lax/libblatSrc.a/libblatSrc_la-zlibFace.o libtool: link: ranlib .libs/libgbtools.a libtool: link: rm -fr .libs/libgbtools.lax libtool: link: ( cd ".libs" && rm -f "libgbtools.la" && ln -s "../libgbtools.la" "libgbtools.la" ) Making all in seqtoolsUtils Making all in . c++ -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I.. -I../gbtools/src/include -DPFETCH_HTML -std=c++11 -g -Wall -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT utilities.o -MD -MP -MF .deps/utilities.Tpo -c -o utilities.o utilities.cpp utilities.cpp:2637:21: warning: comparison of array 'sequence_name' equal to a null pointer is always false [-Wtautological-pointer-compare] foundError = (sequence_name == NULL); ^~~~~~~~~~~~~ ~~~~ 1 warning generated. mv -f .deps/utilities.Tpo .deps/utilities.Po c++ -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I.. -I../gbtools/src/include -DPFETCH_HTML -std=c++11 -g -Wall -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT blxmsp.o -MD -MP -MF .deps/blxmsp.Tpo -c -o blxmsp.o blxmsp.cpp mv -f .deps/blxmsp.Tpo .deps/blxmsp.Po c++ -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I.. -I../gbtools/src/include -DPFETCH_HTML -std=c++11 -g -Wall -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT translate.o -MD -MP -MF .deps/translate.Tpo -c -o translate.o translate.cpp mv -f .deps/translate.Tpo .deps/translate.Po c++ -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I.. -I../gbtools/src/include -DPFETCH_HTML -std=c++11 -g -Wall -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT seqtoolsWebBrowser.o -MD -MP -MF .deps/seqtoolsWebBrowser.Tpo -c -o seqtoolsWebBrowser.o seqtoolsWebBrowser.cpp mv -f .deps/seqtoolsWebBrowser.Tpo .deps/seqtoolsWebBrowser.Po c++ -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I.. -I../gbtools/src/include -DPFETCH_HTML -std=c++11 -g -Wall -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT blxGff3Parser.o -MD -MP -MF .deps/blxGff3Parser.Tpo -c -o blxGff3Parser.o blxGff3Parser.cpp mv -f .deps/blxGff3Parser.Tpo .deps/blxGff3Parser.Po c++ -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I.. -I../gbtools/src/include -DPFETCH_HTML -std=c++11 -g -Wall -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT blxparser.o -MD -MP -MF .deps/blxparser.Tpo -c -o blxparser.o blxparser.cpp mv -f .deps/blxparser.Tpo .deps/blxparser.Po c++ -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I.. -I../gbtools/src/include -DPFETCH_HTML -std=c++11 -g -Wall -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT seqtoolsFetch.o -MD -MP -MF .deps/seqtoolsFetch.Tpo -c -o seqtoolsFetch.o seqtoolsFetch.cpp mv -f .deps/seqtoolsFetch.Tpo .deps/seqtoolsFetch.Po rm -f libSeqtoolsUtils.a ar cru libSeqtoolsUtils.a utilities.o blxmsp.o translate.o seqtoolsWebBrowser.o blxGff3Parser.o blxparser.o seqtoolsFetch.o ranlib libSeqtoolsUtils.a Making all in dotterApp Making all in . c++ -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I.. -I../gbtools/src/include -std=c++11 -g -Wall -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT dotterMain.o -MD -MP -MF .deps/dotterMain.Tpo -c -o dotterMain.o dotterMain.cpp mv -f .deps/dotterMain.Tpo .deps/dotterMain.Po c++ -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I.. -I../gbtools/src/include -std=c++11 -g -Wall -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT greyramptool.o -MD -MP -MF .deps/greyramptool.Tpo -c -o greyramptool.o greyramptool.cpp mv -f .deps/greyramptool.Tpo .deps/greyramptool.Po c++ -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I.. -I../gbtools/src/include -std=c++11 -g -Wall -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT alignmenttool.o -MD -MP -MF .deps/alignmenttool.Tpo -c -o alignmenttool.o alignmenttool.cpp mv -f .deps/alignmenttool.Tpo .deps/alignmenttool.Po c++ -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I.. -I../gbtools/src/include -std=c++11 -g -Wall -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT dotplot.o -MD -MP -MF .deps/dotplot.Tpo -c -o dotplot.o dotplot.cpp mv -f .deps/dotplot.Tpo .deps/dotplot.Po c++ -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I.. -I../gbtools/src/include -std=c++11 -g -Wall -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT dotter.o -MD -MP -MF .deps/dotter.Tpo -c -o dotter.o dotter.cpp dotter.cpp:700:24: warning: address of array '(*dc)->peptideSeqs' will always evaluate to 'true' [-Wpointer-bool-conversion] if ((*dc)->peptideSeqs && (*dc)->peptideSeqs[i]) ~~~~~~~^~~~~~~~~~~ ~~ 1 warning generated. mv -f .deps/dotter.Tpo .deps/dotter.Po c++ -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I.. -I../gbtools/src/include -std=c++11 -g -Wall -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT dotterKarlin.o -MD -MP -MF .deps/dotterKarlin.Tpo -c -o dotterKarlin.o dotterKarlin.cpp dotterKarlin.cpp:55:27: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] double fct_powi(double x, register int n) ^~~~~~~~~ 1 warning generated. mv -f .deps/dotterKarlin.Tpo .deps/dotterKarlin.Po c++ -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -I/usr/local/include -I/usr/local/include/gtk-2.0 -I/usr/local/include/pango-1.0 -I/usr/local/include/fribidi -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -I/usr/local/include/freetype2 -I/usr/local/include/libdrm -I/usr/local/include/libpng16 -I/usr/local/include/harfbuzz -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/atk-1.0 -D_THREAD_SAFE -pthread -I.. -I../gbtools/src/include -std=c++11 -g -Wall -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -MT seqtoolsExonView.o -MD -MP -MF .deps/seqtoolsExonView.Tpo -c -o seqtoolsExonView.o seqtoolsExonView.cpp mv -f .deps/seqtoolsExonView.Tpo .deps/seqtoolsExonView.Po c++ -std=c++11 -g -Wall -O2 -pipe -I/usr/local/include -fstack-protector -fno-strict-aliasing -L/usr/local/lib -lexecinfo -lcurl -lsqlite3 -lm -fstack-protector -o dotter dotterMain.o greyramptool.o alignmenttool.o dotplot.o dotter.o dotterKarlin.o seqtoolsExonView.o ../seqtoolsUtils/libSeqtoolsUtils.a ../gbtools/.libs/libgbtools.a -L/usr/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -latk-1.0 -lcairo -lpthread -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -lfreetype ld: error: undefined symbol: dumpStack >>> referenced by errAbort.c >>> libblatSrc_la-errAbort.o:(pushWarnHandler) in archive ../gbtools/.libs/libgbtools.a ld: error: undefined symbol: dumpStack >>> referenced by errAbort.c >>> libblatSrc_la-errAbort.o:(popWarnHandler) in archive ../gbtools/.libs/libgbtools.a ld: error: undefined symbol: dumpStack >>> referenced by errAbort.c >>> libblatSrc_la-errAbort.o:(pushAbortHandler) in archive ../gbtools/.libs/libgbtools.a ld: error: undefined symbol: dumpStack >>> referenced by errAbort.c >>> libblatSrc_la-errAbort.o:(popAbortHandler) in archive ../gbtools/.libs/libgbtools.a ld: error: undefined symbol: dumpStack >>> referenced by errAbort.c >>> libblatSrc_la-errAbort.o:(pushDebugAbort) in archive ../gbtools/.libs/libgbtools.a ld: error: undefined symbol: dumpStack >>> referenced by errAbort.c >>> libblatSrc_la-errAbort.o:(pushWarnAbort) in archive ../gbtools/.libs/libgbtools.a ld: error: undefined symbol: dumpStack >>> referenced by errAbort.c >>> libblatSrc_la-errAbort.o:(pushSilentWarnHandler) in archive ../gbtools/.libs/libgbtools.a ld: error: undefined symbol: fileSize >>> referenced by common.c >>> libblatSrc_la-common.o:(fileExists) in archive ../gbtools/.libs/libgbtools.a ld: error: undefined symbol: clock1000 >>> referenced by common.c >>> libblatSrc_la-common.o:(uglyTime) in archive ../gbtools/.libs/libgbtools.a ld: error: undefined symbol: makeDir >>> referenced by common.c >>> libblatSrc_la-common.o:(makeDirs) in archive ../gbtools/.libs/libgbtools.a ld: error: undefined symbol: makeDir >>> referenced by common.c >>> libblatSrc_la-common.o:(makeDirs) in archive ../gbtools/.libs/libgbtools.a ld: error: undefined symbol: clock1 >>> referenced by common.c >>> libblatSrc_la-common.o:(dateIsOld) in archive ../gbtools/.libs/libgbtools.a ld: error: undefined symbol: clock1 >>> referenced by common.c >>> libblatSrc_la-common.o:(dateIsOlderBy) in archive ../gbtools/.libs/libgbtools.a ld: error: undefined symbol: dumpStack >>> referenced by cheapcgi.c >>> libblatSrc_la-cheapcgi.o:(catchSignal) in archive ../gbtools/.libs/libgbtools.a ld: error: undefined symbol: fileSize >>> referenced by obscure.c >>> libblatSrc_la-obscure.o:(readInGulp) in archive ../gbtools/.libs/libgbtools.a ld: error: undefined symbol: fileSize >>> referenced by obscure.c >>> libblatSrc_la-obscure.o:(readAllWords) in archive ../gbtools/.libs/libgbtools.a ld: error: undefined symbol: makeDir >>> referenced by portimpl.c >>> libblatSrc_la-portimpl.o:(makeDirsOnPath) in archive ../gbtools/.libs/libgbtools.a ld: error: undefined symbol: makeDir >>> referenced by portimpl.c >>> libblatSrc_la-portimpl.o:(makeDirsOnPath) in archive ../gbtools/.libs/libgbtools.a ld: error: undefined symbol: rTempName >>> referenced by servBrcMcw.c >>> libblatSrc_la-servBrcMcw.o:(_makeTempName) in archive ../gbtools/.libs/libgbtools.a ld: error: undefined symbol: rTempName >>> referenced by servCrunx.c >>> libblatSrc_la-servCrunx.o:(_makeTempName) in archive ../gbtools/.libs/libgbtools.a ld: error: too many errors emitted, stopping now (use -error-limit=0 to see all errors) c++: error: linker command failed with exit code 1 (use -v to see invocation) *** Error code 1 Stop. make[4]: stopped in /wrkdirs/usr/ports/biology/seqtools/work/seqtools-4.44.1/dotterApp *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/biology/seqtools/work/seqtools-4.44.1/dotterApp *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/biology/seqtools/work/seqtools-4.44.1 *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/seqtools/work/seqtools-4.44.1 *** Error code 1 Stop. make: stopped in /usr/ports/biology/seqtools
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