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Date:      Sat, 27 Nov 2021 13:28:25 GMT
From:      "Jason W. Bacon" <jwb@FreeBSD.org>
To:        ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org
Subject:   git: 5ed416aa0967 - main - biology/hisat2: Remove patch causing quality scores of "-0"
Message-ID:  <202111271328.1ARDSPDI043471@gitrepo.freebsd.org>

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The branch main has been updated by jwb:

URL: https://cgit.FreeBSD.org/ports/commit/?id=5ed416aa0967ac4cf5153f9f7cae4b9f14c56966

commit 5ed416aa0967ac4cf5153f9f7cae4b9f14c56966
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2021-11-27 13:26:45 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2021-11-27 13:26:45 +0000

    biology/hisat2: Remove patch causing quality scores of "-0"
---
 biology/hisat2/Makefile           |  1 +
 biology/hisat2/files/patch-util.h | 11 -----------
 2 files changed, 1 insertion(+), 11 deletions(-)

diff --git a/biology/hisat2/Makefile b/biology/hisat2/Makefile
index ae0ad38fbe7d..33d56578fcf8 100644
--- a/biology/hisat2/Makefile
+++ b/biology/hisat2/Makefile
@@ -1,6 +1,7 @@
 PORTNAME=		hisat2
 DISTVERSIONPREFIX=	v
 DISTVERSION=		2.2.1
+PORTREVISION=		1
 CATEGORIES=		biology perl5 python
 
 MAINTAINER=	jwb@FreeBSD.org
diff --git a/biology/hisat2/files/patch-util.h b/biology/hisat2/files/patch-util.h
deleted file mode 100644
index 43c3aa88400c..000000000000
--- a/biology/hisat2/files/patch-util.h
+++ /dev/null
@@ -1,11 +0,0 @@
---- util.h.orig	2021-11-26 15:40:17 UTC
-+++ util.h
-@@ -43,7 +43,7 @@ char* itoa10(const T& value, char* result) {
- 	// Only apply negative sign for base 10
- 	if(std::numeric_limits<T>::is_signed) {
- 		// Avoid compiler warning in cases where T is unsigned
--		if (value <= 0 && value != 0) *out++ = '-';
-+		if (value <= 0) *out++ = '-';
- 	}
- 	reverse( result, out );
- 	*out = 0; // terminator



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