Date: Tue, 11 May 2021 10:46:09 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 122powerpc64-quarterly][science/gromacs] Failed for gromacs-2021.1 in build Message-ID: <202105111046.14BAk91g011615@pylon.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: http://pylon.nyi.freebsd.org/data/122powerpc64-quarterly/e680e4dc222a/logs/gromacs-2021.1.log Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=122powerpc64-quarterly&build=e680e4dc222a Log: =>> Building science/gromacs build started at Tue May 11 10:15:57 UTC 2021 port directory: /usr/ports/science/gromacs package name: gromacs-2021.1 building for: FreeBSD 122powerpc64-quarterly-job-10 12.2-RELEASE FreeBSD 12.2-RELEASE powerpc maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-8-gaf08dbda Host OSVERSION: 1400003 Jail OSVERSION: 1202000 Job Id: 10 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1202000 UNAME_v=FreeBSD 12.2-RELEASE UNAME_r=12.2-RELEASE BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-8-gaf08dbda MASTERMNT=/usr/local/poudriere/data/.m/122powerpc64-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/122powerpc64-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=122powerpc64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/122powerpc64-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for gromacs-2021.1: ATLAS=off: Use ATLAS for BLAS and LAPACK FLOAT=off: Use single instead of double precision LEGACY=on: Install legacy API OPENCL=off: Heterogeneous computing via OpenCL OPENMP=on: Parallel processing support via OpenMP SIMD=off: Use CPU-specific optimizations X11=on: X11 (graphics) support ====> Multiprocessing: you have to select exactly one of them NOMP=off: No multiprocessing support MPICH=off: Parallel processing support via MPICH OPENMPI=off: Parallel processing support via Open MPI THREAD_MPI=on: Build a thread-MPI-based multithreaded version of GROMACS ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran10" FC="gfortran10" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc10" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc10" ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gromacs/work HOME=/wrkdirs/usr/ports/science/gromacs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/gromacs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran10" FC="gfortran10" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc10" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc10" PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gromacs/work HOME=/wrkdirs/usr/ports/science/gromacs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/gromacs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="gcc10" CFLAGS="-O2 -pipe - fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -fno-strict-aliasing " CPP="cpp10" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc10 -L/usr/local/lib/gcc10 -B/usr/local/bin -L/usr/local/lib -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -L/usr/local/lib/gcc10 " LIBS="" CXX="g++10" CXXFLAGS="-O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- ATLAS="@comment " NO_ATLAS="" FLOAT="@comment " NO_FLOAT="" SUFFIX_D="_d" LEGACY="" NO_LEGACY="@comment " MPICH="@comment " NO_MPICH="" NOMP="@comment " NO_NOMP="" OPENCL="@comment " NO_OPENCL="" OPENMP="" NO_OPENMP="@comment " OPENMPI="@comment " NO_OPENMPI="" SIMD="@comment " NO_SIMD="" THREAD_MPI="" NO_THREAD_MPI="@comment " SUFFIX_MPI="" X11="" NO_X11="@comment " CMAKE_BUILD_TYPE="release" GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=12.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1 PERL_VER=5.32 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/gromacs" EXAMPLESDIR="share/examples/gromacs" DATADIR="share/gromacs" WWWDIR="www/gromacs" ETCDIR="etc/gromacs" --End PLIST_SUB-- --SUB_LIST-- ATLAS="@comment " NO_ATLAS="" FLOAT="@comment " NO_FLOAT="" LEGACY="" NO_LEGACY="@comment " MPICH="@comment " NO_MPICH="" NOMP="@comment " NO_NOMP="" OPENCL="@comment " NO_OPENCL="" OPENMP="" NO_OPENMP="@comment " OPENMPI="@comment " NO_OPENMPI="" SIMD="@comment " NO_SIMD="" THREAD_MPI="" NO_THREAD_MPI="@comment " X11="" NO_X11="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gromacs DOCSDIR=/usr/local/share/doc/gromacs EXAMPLESDIR=/usr/local/share/examples/gromacs WWWDIR=/usr/local/www/gromacs ETCDIR=/usr/local/etc/gromacs --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=Using built-in specs. Target: powerpc64-undermydesk-freebsd Configured with: FreeBSD/powerpc64 system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-Qy" "-melf64ppc_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtsavres.o" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11" CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11" CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x" CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11" CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14" CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17" CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11" CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14" CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17" _OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _OBJC_ALTCCVERSION_921dbbb2=none ARCH=powerpc64 PPC_ABI=ELFv1 OPSYS=FreeBSD _OSRELEASE=12.2-RELEASE OSREL=12.2 OSVERSION=1202000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License LGPL21 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> gromacs-2021.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.16.3.txz [122powerpc64-quarterly-job-10] Installing pkg-1.16.3... [122powerpc64-quarterly-job-10] Extracting pkg-1.16.3: .......... done ===> gromacs-2021.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of gromacs-2021.1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by gromacs-2021.1 for building =========================================================================== =======================<phase: checksum >============================ ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by gromacs-2021.1 for building => SHA256 Checksum OK for gromacs-2021.1.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by gromacs-2021.1 for building ===> Extracting for gromacs-2021.1 => SHA256 Checksum OK for gromacs-2021.1.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for gromacs-2021.1 ===> Applying FreeBSD patches for gromacs-2021.1 from /usr/ports/science/gromacs/files =========================================================================== =======================<phase: build-depends >============================ ===> gromacs-2021.1 depends on package: boost-libs>=1.44 - not found ===> Installing existing package /packages/All/boost-libs-1.72.0_4.txz [122powerpc64-quarterly-job-10] Installing boost-libs-1.72.0_4... [122powerpc64-quarterly-job-10] `-- Installing gcc10-10.2.0_1... [122powerpc64-quarterly-job-10] | `-- Installing binutils-2.33.1_4,1... [122powerpc64-quarterly-job-10] | | `-- Installing gettext-runtime-0.21... <snip> --- src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o --- [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/coordinateio/outputadapters/setstarttime.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o --- [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/coordinateio/outputadapters/settimestep.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o --- [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/coordinateio/outputadapters/setvelocities.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o --- [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/coordinateio/requirements.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/coordinateio/requirements.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o --- [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/trajectoryanalysis/analysismodule.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o --- [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/trajectoryanalysis/analysissettings.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o --- [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem 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src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers 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/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/trajectoryanalysis/modules/convert_trj.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o --- [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/trajectoryanalysis/modules/distance.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o --- [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem 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-Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/trajectoryanalysis/modules/freevolume.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o --- [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem 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/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/trajectoryanalysis/modules/rdf.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o --- [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe 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object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC 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/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/tools/convert_tpr.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o --- [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/tools/dump.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/tools/dump.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o --- [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem 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-Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/tools/mk_angndx.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/tools/mk_angndx.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o --- [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include 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-Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/tools/trjcat.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/tools/trjcat.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o --- [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/tools/trjconv.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/tools/trjconv.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o --- [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem 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src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/gmxlib/conformation_utilities.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o --- [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/gmxlib/network.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/gmxlib/network.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o --- [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem 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src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o --- [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem 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--- [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC 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/wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/mdlib/calcmu.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o --- [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src 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src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers 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/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/mdlib/compute_io.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o --- [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/mdlib/constraintrange.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o --- [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/mdlib/coupling.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o --- [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/mdlib/dispersioncorrection.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o --- [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/mdlib/ebin.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o --- [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/mdlib/enerdata_utils.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o --- [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/mdlib/energydrifttracker.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o --- [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/mdlib/energyoutput.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o --- [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/mdlib/expanded.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o --- [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/mdlib/expanded_internal.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o --- --- src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o --- --- src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o --- [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/mdlib/force.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/mdlib/force.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o --- [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/local/bin/g++10 -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/thread_mpi/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/external/lmfit -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc10 -Wl,-rpath=/usr/local/lib/gcc10 -fPIC -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -o CMa keFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/mdlib/forcerec.cpp --- src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o --- In file included from /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/mdlib/force.cpp:40: /wrkdirs/usr/ports/science/gromacs/work/gromacs-2021.1/src/gromacs/mdlib/force.h:100:15: error: 'int64_t' has not been declared 100 | int64_t step, | ^~~~~~~ *** [src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o] Error code 1 make[3]: stopped in /wrkdirs/usr/ports/science/gromacs/work/.build 1 error make[3]: stopped in /wrkdirs/usr/ports/science/gromacs/work/.build *** [src/gromacs/CMakeFiles/libgromacs.dir/all] Error code 2 make[2]: stopped in /wrkdirs/usr/ports/science/gromacs/work/.build 1 error make[2]: stopped in /wrkdirs/usr/ports/science/gromacs/work/.build *** [all] Error code 2 make[1]: stopped in /wrkdirs/usr/ports/science/gromacs/work/.build 1 error make[1]: stopped in /wrkdirs/usr/ports/science/gromacs/work/.build ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/science/gromacs
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