From owner-freebsd-ports-bugs@freebsd.org Wed Jun 6 15:15:51 2018 Return-Path: Delivered-To: freebsd-ports-bugs@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id C0316FD0C23 for ; Wed, 6 Jun 2018 15:15:51 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from mailman.ysv.freebsd.org (mailman.ysv.freebsd.org [IPv6:2001:1900:2254:206a::50:5]) by mx1.freebsd.org (Postfix) with ESMTP id 51C9779272 for ; Wed, 6 Jun 2018 15:15:51 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: by mailman.ysv.freebsd.org (Postfix) id 0B851FD0C1F; Wed, 6 Jun 2018 15:15:51 +0000 (UTC) Delivered-To: ports-bugs@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id ECA01FD0C1E for ; Wed, 6 Jun 2018 15:15:50 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from mxrelay.ysv.freebsd.org (mxrelay.ysv.freebsd.org [IPv6:2001:1900:2254:206a::19:3]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client CN "mxrelay.ysv.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 8364D79271 for ; Wed, 6 Jun 2018 15:15:50 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from kenobi.freebsd.org (kenobi.freebsd.org [IPv6:2001:1900:2254:206a::16:76]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.ysv.freebsd.org (Postfix) with ESMTPS id C0225276D5 for ; Wed, 6 Jun 2018 15:15:49 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from kenobi.freebsd.org ([127.0.1.118]) by kenobi.freebsd.org (8.15.2/8.15.2) with ESMTP id w56FFnW0034852 for ; Wed, 6 Jun 2018 15:15:49 GMT (envelope-from bugzilla-noreply@freebsd.org) Received: (from bugzilla@localhost) by kenobi.freebsd.org (8.15.2/8.15.2/Submit) id w56FFnQR034844 for ports-bugs@FreeBSD.org; Wed, 6 Jun 2018 15:15:49 GMT (envelope-from bugzilla-noreply@freebsd.org) X-Authentication-Warning: kenobi.freebsd.org: bugzilla set sender to bugzilla-noreply@freebsd.org using -f From: bugzilla-noreply@freebsd.org To: ports-bugs@FreeBSD.org Subject: [Bug 228776] [NEW PORT] biology/infernal: Search sequence databases for structural RNA homologs Date: Wed, 06 Jun 2018 15:15:49 +0000 X-Bugzilla-Reason: AssignedTo X-Bugzilla-Type: changed X-Bugzilla-Watch-Reason: None X-Bugzilla-Product: Ports & Packages X-Bugzilla-Component: Individual Port(s) X-Bugzilla-Version: Latest X-Bugzilla-Keywords: X-Bugzilla-Severity: Affects Only Me X-Bugzilla-Who: commit-hook@freebsd.org X-Bugzilla-Status: New X-Bugzilla-Resolution: X-Bugzilla-Priority: --- X-Bugzilla-Assigned-To: ports-bugs@FreeBSD.org X-Bugzilla-Flags: X-Bugzilla-Changed-Fields: Message-ID: In-Reply-To: References: Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable X-Bugzilla-URL: https://bugs.freebsd.org/bugzilla/ Auto-Submitted: auto-generated MIME-Version: 1.0 X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.26 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Wed, 06 Jun 2018 15:15:52 -0000 https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D228776 --- Comment #1 from commit-hook@freebsd.org --- A commit references this bug: Author: krion Date: Wed Jun 6 15:15:19 UTC 2018 New revision: 471850 URL: https://svnweb.freebsd.org/changeset/ports/471850 Log: Add new port: biology/infernal Infernal is a tool for searching DNA sequence database for RNA structure and sequence similarities. The Rfam database of RNA families is based on Infernal, and we can search DNA sequences for structural homologs of Rfam families. WWW: http://eddylab.org/infernal/ PR: 228776 Submitted by: Motomichi Matsuzaki Changes: head/biology/Makefile head/biology/infernal/ head/biology/infernal/Makefile head/biology/infernal/distinfo head/biology/infernal/files/ head/biology/infernal/files/patch-configure head/biology/infernal/pkg-descr head/biology/infernal/pkg-plist --=20 You are receiving this mail because: You are the assignee for the bug.=