From owner-freebsd-pkg-fallout@FreeBSD.ORG Thu May 22 10:24:53 2014 Return-Path: Delivered-To: pkg-fallout@FreeBSD.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id 852F53BF for ; Thu, 22 May 2014 10:24:53 +0000 (UTC) Received: from beefy2.isc.freebsd.org (beefy2.isc.freebsd.org [IPv6:2001:4f8:3:ffe0:4072:0:16:39]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 6299221EF; Thu, 22 May 2014 10:24:53 +0000 (UTC) Received: from beefy2.isc.freebsd.org (localhost [127.0.0.1]) by beefy2.isc.freebsd.org (8.14.8/8.14.8) with ESMTP id s4MAOr4E051254; Thu, 22 May 2014 10:24:53 GMT (envelope-from pkg-fallout-builder@FreeBSD.org) Received: (from root@localhost) by beefy2.isc.freebsd.org (8.14.8/8.14.8/Submit) id s4MAOrIO051230; Thu, 22 May 2014 10:24:53 GMT (envelope-from pkg-fallout-builder@FreeBSD.org) Date: Thu, 22 May 2014 10:24:53 GMT From: pkg-fallout-builder@FreeBSD.org Message-Id: <201405221024.s4MAOrIO051230@beefy2.isc.freebsd.org> To: xmj@chaot.net Subject: [REL - 91amd64-default][science/py-h5py] Failed for py27-h5py-2.2.1_2 in build Cc: pkg-fallout@FreeBSD.org X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 22 May 2014 10:24:53 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: xmj@chaot.net Last committer: sunpoet@FreeBSD.org Ident: $FreeBSD: head/science/py-h5py/Makefile 352854 2014-05-03 00:55:30Z sunpoet $ Log URL: http://beefy2.isc.freebsd.org/bulk/91amd64-default/2014-05-22_01h27m00s/logs/py27-h5py-2.2.1_2.log Build URL: http://beefy2.isc.freebsd.org/bulk/91amd64-default/2014-05-22_01h27m00s Log: ====>> Building science/py-h5py build started at Thu May 22 10:23:51 UTC 2014 port directory: /usr/ports/science/py-h5py building for: FreeBSD 91amd64-default-job-09 9.1-RELEASE-p11 FreeBSD 9.1-RELEASE-p11 amd64 maintained by: xmj@chaot.net Makefile ident: $FreeBSD: head/science/py-h5py/Makefile 352854 2014-05-03 00:55:30Z sunpoet $ Poudriere version: 3.1-pre Host OSVERSION: 1100013 Jail OSVERSION: 901000 ---Begin Environment--- OSVERSION=901000 UNAME_v=FreeBSD 9.1-RELEASE-p11 UNAME_r=9.1-RELEASE-p11 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/build/91amd64-default/ref PKG_EXT=txz tpid=72035 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNG=1 PKGNAME=py27-h5py-2.2.1_2 PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f PKG_ADD=/usr/local/sbin/pkg-static add OLDPWD=/usr/local/poudriere/data/build/91amd64-default/ref/poudriere/rdeps PWD=/usr/local/poudriere/data/build/91amd64-default/ref/poudriere/pool MASTERNAME=91amd64-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=/poudriere/pkg-static version PKG_BIN=/usr/local/sbin/pkg-static ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for py27-h5py-2.2.1_2: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- TMPDIR="/tmp" PYTHON="/usr/local/bin/python2.7" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd9 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VERSION=python2.7 OSREL=9.1 PREFIX=%D LOCALBASE=/usr/local PORTDOCS="" PORTEXAMPLES="" PORTDATA="" LIB32DIR=lib DOCSDIR="share/doc/h5py" EXAMPLESDIR="share/examples/h5py" DATADIR="share/h5py" WWWDIR="www/h5py" ETCDIR="etc/h5py" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/h5py DOCSDIR=/usr/local/share/doc/h5py EXAMPLESDIR=/usr/local/share/examples/h5py WWWDIR=/usr/local/www/h5py ETCDIR=/usr/local/etc/h5py --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ===> Cleaning for py27-h5py-2.2.1_2 =================================================== ===> License BSD accepted by the user =========================================================================== =================================================== ===> py27-h5py-2.2.1_2 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.2.7_2.txz Installing pkg-1.2.7_2... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of py27-h5py-2.2.1_2 =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD accepted by the user ===> Fetching all distfiles required by py27-h5py-2.2.1_2 for building =========================================================================== =================================================== ===> License BSD accepted by the user ===> Fetching all distfiles required by py27-h5py-2.2.1_2 for building => SHA256 Checksum OK for h5py-2.2.1.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD accepted by the user ===> Fetching all distfiles required by py27-h5py-2.2.1_2 for building ===> Extracting for py27-h5py-2.2.1_2 => SHA256 Checksum OK for h5py-2.2.1.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for py27-h5py-2.2.1_2 ===> Applying FreeBSD patches for py27-h5py-2.2.1_2 /usr/bin/sed -i.bak -e 's|%%LOCALBASE%%|/usr/local|' /wrkdirs/usr/ports/science/py-h5py/work/h5py-2.2.1/setup.py =========================================================================== =================================================== ===> py27-h5py-2.2.1_2 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - not found ===> Verifying install for /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py in /usr/ports/math/py-numpy ===> Installing existing package /packages/All/py27-numpy-1.8.0_2,1.txz Installing py27-numpy-1.8.0_2,1...Installing blas-3.4.2_2...Installing gcc-4.7.3_1...Installing binutils-2.24...Installing gettext-0.18.3.1_1...Installing libiconv-1.14_3... done done done Installing gcc-ecj-4.5... done Installing gmp-5.1.3_2... done Installing mpc-1.0.2...Installing mpfr-3.1.2_2... done done done done Installing lapack-3.4.2_2... done Installing py27-nose-1.3.0_1...Installing py27-setuptools27-2.0.1...Installing python27-2.7.6_4... done done done Installing suitesparse-4.0.2_3... done done To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc47 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ==== Note that some of the standard modules are provided as separate ports since they require extra dependencies: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter Install them as needed. ==== ===> Returning to build of py27-h5py-2.2.1_2 ===> py27-h5py-2.2.1_2 depends on package: py27-setuptools27>0 - found ===> py27-h5py-2.2.1_2 depends on file: /usr/local/bin/python2.7 - found =========================================================================== =================================================== ===> py27-h5py-2.2.1_2 depends on shared library: libhdf5.so - not found ===> Verifying for libhdf5.so in /usr/ports/science/hdf5 ===> Installing existing package /packages/All/hdf5-1.8.13.txz Installing hdf5-1.8.13... done ===> Returning to build of py27-h5py-2.2.1_2 =========================================================================== =================================================== ===> Configuring for py27-h5py-2.2.1_2 Cython not present; building for HDF5 1.8.4+ running config =========================================================================== =================================================== ===> Building for py27-h5py-2.2.1_2 Cython not present; building for HDF5 1.8.4+ running build running build_py creating build creating build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7 creating build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/ipy_completer.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/__init__.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/version.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/highlevel.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py creating build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl copying h5py/_hl/group.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl copying h5py/_hl/files.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl copying h5py/_hl/__init__.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl copying h5py/_hl/dataset.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl copying h5py/_hl/base.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl copying h5py/_hl/datatype.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl copying h5py/_hl/selections.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl copying h5py/_hl/filters.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl copying h5py/_hl/selections2.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl copying h5py/_hl/dims.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl copying h5py/_hl/attrs.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl creating build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl/tests copying h5py/_hl/tests/test_file.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl/tests copying h5py/_hl/tests/common.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl/tests copying h5py/_hl/tests/__init__.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl/tests copying h5py/_hl/tests/test_base.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl/tests copying h5py/_hl/tests/test_attrs.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl/tests copying h5py/_hl/tests/test_group.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl/tests copying h5py/_hl/tests/test_dataset.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl/tests copying h5py/_hl/tests/test_datatype.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl/tests copying h5py/_hl/tests/test_attrs_data.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl/tests copying h5py/_hl/tests/test_dimension_scales.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl/tests copying h5py/_hl/tests/test_slicing.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl/tests copying h5py/_hl/tests/test_selections.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_hl/tests creating build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/lowtest copying h5py/lowtest/test_h5f.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/lowtest copying h5py/lowtest/__init__.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/lowtest copying h5py/lowtest/test_h5.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/lowtest copying h5py/lowtest/test_objects.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/lowtest copying h5py/lowtest/test_h5t.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/lowtest copying h5py/lowtest/test_h5p.py -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/lowtest copying h5py/h5s.pyx -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/_errors.pyx -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/defs.pyx -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/h5d.pyx -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/h5ac.pyx -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/h5r.pyx -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/utils.pyx -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/h5l.pyx -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/h5z.pyx -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/h5o.pyx -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/_conv.pyx -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/h5p.pyx -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/h5i.pyx -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/h5g.pyx -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/h5ds.pyx -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/h5f.pyx -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/h5fd.pyx -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/_proxy.pyx -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/h5t.pyx -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/h5a.pyx -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/h5.pyx -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py copying h5py/_objects.pyx -> build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py running build_ext building 'h5py.defs' extension creating build/temp.freebsd-9.1-RELEASE-p11-amd64-2.7 creating build/temp.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py cc -DNDEBUG -O2 -pipe -fno-strict-aliasing -fPIC -DH5_USE_16_API -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/py-h5py/work/h5py-2.2.1/lzf -I/usr/local/include -I/usr/local/include/python2.7 -c h5py/defs.c -o build/temp.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/defs.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from h5py/api_compat.h:21, from h5py/defs.c:259: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" h5py/defs.c: In function '__pyx_f_4h5py_4defs_H5Lunpack_elink_val': h5py/defs.c:21462: warning: passing argument 4 of 'H5Lunpack_elink_val' from incompatible pointer type h5py/defs.c:21462: warning: passing argument 5 of 'H5Lunpack_elink_val' from incompatible pointer type h5py/defs.c: In function '__pyx_f_4h5py_4defs_H5Pset_fapl_multi': h5py/defs.c:31308: warning: passing argument 4 of 'H5Pset_fapl_multi' from incompatible pointer type h5py/defs.c: In function '__pyx_f_4h5py_4defs_H5Pget_cache': h5py/defs.c:31766: warning: passing argument 3 of 'H5Pget_cache' from incompatible pointer type h5py/defs.c: In function '__pyx_f_4h5py_4defs_H5Sselect_elements': h5py/defs.c:51217: warning: passing argument 4 of 'H5Sselect_elements' from incompatible pointer type cc -shared -O2 -pipe -fno-strict-aliasing build/temp.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/defs.o -L/usr/local/lib -Wl,-rpath=/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/defs.so building 'h5py._errors' extension cc -DNDEBUG -O2 -pipe -fno-strict-aliasing -fPIC -DH5_USE_16_API -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/py-h5py/work/h5py-2.2.1/lzf -I/usr/local/include -I/usr/local/include/python2.7 -c h5py/_errors.c -o build/temp.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_errors.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from h5py/api_compat.h:21, from h5py/_errors.c:259: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" h5py/_errors.c: In function '__pyx_f_4h5py_7_errors_walk_cb': h5py/_errors.c:631: warning: assignment discards qualifiers from pointer target type h5py/_errors.c: In function '__pyx_f_4h5py_7_errors_set_exception': h5py/_errors.c:839: warning: assignment discards qualifiers from pointer target type h5py/_errors.c: In function '__pyx_pf_4h5py_7_errors_2unsilence_errors': h5py/_errors.c:1169: warning: passing argument 1 of 'H5Eset_auto1' from incompatible pointer type cc -shared -O2 -pipe -fno-strict-aliasing build/temp.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_errors.o -L/usr/local/lib -Wl,-rpath=/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_errors.so building 'h5py._objects' extension cc -DNDEBUG -O2 -pipe -fno-strict-aliasing -fPIC -DH5_USE_16_API -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/py-h5py/work/h5py-2.2.1/lzf -I/usr/local/include -I/usr/local/include/python2.7 -c h5py/_objects.c -o build/temp.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_objects.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from h5py/api_compat.h:21, from h5py/_objects.c:259: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" cc -shared -O2 -pipe -fno-strict-aliasing build/temp.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_objects.o -L/usr/local/lib -Wl,-rpath=/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_objects.so building 'h5py._proxy' extension cc -DNDEBUG -O2 -pipe -fno-strict-aliasing -fPIC -DH5_USE_16_API -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/py-h5py/work/h5py-2.2.1/lzf -I/usr/local/include -I/usr/local/include/python2.7 -c h5py/_proxy.c -o build/temp.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_proxy.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from h5py/api_compat.h:21, from h5py/_proxy.c:259: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" h5py/_proxy.c: In function '__pyx_f_4h5py_6_proxy_h5py_copy': h5py/_proxy.c:2383: warning: passing argument 4 of '__pyx_f_4h5py_4defs_H5Diterate' from incompatible pointer type h5py/_proxy.c:2404: warning: passing argument 4 of '__pyx_f_4h5py_4defs_H5Diterate' from incompatible pointer type cc -shared -O2 -pipe -fno-strict-aliasing build/temp.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_proxy.o -L/usr/local/lib -Wl,-rpath=/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/_proxy.so building 'h5py.h5fd' extension cc -DNDEBUG -O2 -pipe -fno-strict-aliasing -fPIC -DH5_USE_16_API -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/py-h5py/work/h5py-2.2.1/lzf -I/usr/local/include -I/usr/local/include/python2.7 -c h5py/h5fd.c -o build/temp.freebsd-9.1-RELEASE-p11-amd64-2.7/h5py/h5fd.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from h5py/api_compat.h:21, from h5py/h5fd.c:259: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" h5py/h5fd.c: In function 'inith5fd': h5py/h5fd.c:857: error: 'H5FD_MPIPOSIX' undeclared (first use in this function) h5py/h5fd.c:857: error: (Each undeclared identifier is reported only once h5py/h5fd.c:857: error: for each function it appears in.) error: command 'cc' failed with exit status 1 *** [do-build] Error code 1 Stop in /usr/ports/science/py-h5py. ===> Cleaning for py27-h5py-2.2.1_2