Date: Sat, 15 Jul 2017 01:25:14 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 110mips-quarterly][biology/iolib] Failed for io_lib-1.14.9 in build Message-ID: <201707150125.v6F1PEx3079390@beefy14.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: danilo@FreeBSD.org Last committer: linimon@FreeBSD.org Ident: $FreeBSD: branches/2017Q3/biology/iolib/Makefile 440746 2017-05-13 03:35:51Z linimon $ Log URL: http://beefy14.nyi.freebsd.org/data/110mips-quarterly/445835/logs/io_lib-1.14.9.log Build URL: http://beefy14.nyi.freebsd.org/build.html?mastername=110mips-quarterly&build=445835 Log: ====>> Building biology/iolib build started at Sat Jul 15 01:16:32 UTC 2017 port directory: /usr/ports/biology/iolib building for: FreeBSD 110mips-quarterly-job-19 11.0-RELEASE-p11 FreeBSD 11.0-RELEASE-p11 1100122 mips maintained by: danilo@FreeBSD.org Makefile ident: $FreeBSD: branches/2017Q3/biology/iolib/Makefile 440746 2017-05-13 03:35:51Z linimon $ Poudriere version: 3.1.19-48-g1bf78d5a Host OSVERSION: 1200033 Jail OSVERSION: 1100122 Job Id: 19 ---Begin Environment--- SHELL=/bin/csh UNAME_p=mips UNAME_m=mips ABI_FILE=/usr/lib/crt1.o OSVERSION=1100122 UNAME_v=FreeBSD 11.0-RELEASE-p11 1100122 UNAME_r=11.0-RELEASE-p11 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/110mips-quarterly/ref QEMU_EMULATING=1 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=io_lib-1.14.9 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/110mips-quarterly/ref/.p/pool MASTERNAME=110mips-quarterly SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.19-48-g1bf78d5a SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/iolib/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/iolib/work HOME=/wrkdirs/usr/ports/biology/iolib/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/iolib/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/iolib/work HOME=/wrkdirs/usr/ports/biology/iolib/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/io_lib" EXAMPLESDIR="share/examples/io_lib" DATADIR="share/io_lib" WWWDIR="www/io_lib" ETCDIR="etc/io_lib" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/io_lib DOCSDIR=/usr/local/share/doc/io_lib EXAMPLESDIR=/usr/local/share/examples/io_lib WWWDIR=/usr/local/www/io_lib ETCDIR=/usr/local/etc/io_lib --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes MACHINE=mips MACHINE_ARCH=mips ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=mips CONFIGURE_MAX_CMD_LEN=262144 OPSYS=FreeBSD OSREL=11.0 OSVERSION=1100122 PYTHONBASE=/usr/local UID=0 _JAVA_OS_LIST_REGEXP=native\|linux _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ _OSRELEASE=11.0-RELEASE-p11 #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 131072 stack size (kbytes, -s) 8192 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License BSD3CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> io_lib-1.14.9 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.1.txz [110mips-quarterly-job-19] Installing pkg-1.10.1... [110mips-quarterly-job-19] Extracting pkg-1.10.1: .......... done ===> io_lib-1.14.9 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of io_lib-1.14.9 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by io_lib-1.14.9 for building =========================================================================== =======================<phase: checksum >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by io_lib-1.14.9 for building => SHA256 Checksum OK for jkbonfield-io_lib-io_lib-1-14-9_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by io_lib-1.14.9 for building ===> Extracting for io_lib-1.14.9 => SHA256 Checksum OK for jkbonfield-io_lib-io_lib-1-14-9_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for io_lib-1.14.9 ===> Applying FreeBSD patches for io_lib-1.14.9 =========================================================================== =======================<phase: build-depends >============================ ===> io_lib-1.14.9 depends on executable: autoconf-2.69 - not found ===> Installing existing package /packages/All/autoconf-2.69_1.txz [110mips-quarterly-job-19] Installing autoconf-2.69_1... [110mips-quarterly-job-19] `-- Installing autoconf-wrapper-20131203... <snip> libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-misc_scf.lo -MD -MP -MF .deps/libstaden_read_la-misc_scf.Tpo -c misc_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-misc_scf.o libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-misc_scf.lo -MD -MP -MF .deps/libstaden_read_la-misc_scf.Tpo -c misc_scf.c -o libstaden_read_la-misc_scf.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-misc_scf.Tpo .deps/libstaden_read_la-misc_scf.Plo /bin/sh ../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-read_scf.lo -MD -MP -MF .deps/libstaden_read_la-read_scf.Tpo -c -o libstaden_read_la-read_scf.lo `test -f 'read_scf.c' || echo './'`read_scf.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-read_scf.lo -MD -MP -MF .deps/libstaden_read_la-read_scf.Tpo -c read_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-read_scf.o libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-read_scf.lo -MD -MP -MF .deps/libstaden_read_la-read_scf.Tpo -c read_scf.c -o libstaden_read_la-read_scf.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-read_scf.Tpo .deps/libstaden_read_la-read_scf.Plo /bin/sh ../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-write_scf.lo -MD -MP -MF .deps/libstaden_read_la-write_scf.Tpo -c -o libstaden_read_la-write_scf.lo `test -f 'write_scf.c' || echo './'`write_scf.c 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-I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-sff.lo -MD -MP -MF .deps/libstaden_read_la-sff.Tpo -c sff.c -fPIC -DPIC -o .libs/libstaden_read_la-sff.o libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-sff.lo -MD -MP -MF .deps/libstaden_read_la-sff.Tpo -c sff.c -o libstaden_read_la-sff.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-sff.Tpo .deps/libstaden_read_la-sff.Plo /bin/sh ../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-srf.lo -MD -MP -MF .deps/libstaden_read_la-srf.Tpo -c -o libstaden_read_la-srf.lo `test -f 'srf.c' || echo './'`srf.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-srf.lo -MD -MP -MF .deps/libstaden_read_la-srf.Tpo -c srf.c -fPIC -DPIC -o .libs/libstaden_read_la-srf.o libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-srf.lo -MD -MP -MF .deps/libstaden_read_la-srf.Tpo -c srf.c -o libstaden_read_la-srf.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-srf.Tpo .deps/libstaden_read_la-srf.Plo /bin/sh ../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-array.lo -MD -MP -MF .deps/libstaden_read_la-array.Tpo -c -o libstaden_read_la-array.lo `test -f 'array.c' || echo './'`array.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-array.lo -MD -MP -MF .deps/libstaden_read_la-array.Tpo -c array.c -fPIC -DPIC -o .libs/libstaden_read_la-array.o libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-array.lo -MD -MP -MF .deps/libstaden_read_la-array.Tpo -c array.c -o libstaden_read_la-array.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-array.Tpo .deps/libstaden_read_la-array.Plo /bin/sh ../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-compress.lo -MD -MP -MF .deps/libstaden_read_la-compress.Tpo -c -o libstaden_read_la-compress.lo `test -f 'compress.c' || echo './'`compress.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-compress.lo -MD -MP -MF .deps/libstaden_read_la-compress.Tpo -c compress.c -fPIC -DPIC -o .libs/libstaden_read_la-compress.o libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-compress.lo -MD -MP -MF .deps/libstaden_read_la-compress.Tpo -c compress.c -o libstaden_read_la-compress.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-compress.Tpo .deps/libstaden_read_la-compress.Plo /bin/sh ../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-error.lo -MD -MP -MF .deps/libstaden_read_la-error.Tpo -c -o libstaden_read_la-error.lo `test -f 'error.c' || echo './'`error.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-error.lo -MD -MP -MF .deps/libstaden_read_la-error.Tpo -c error.c -fPIC -DPIC -o .libs/libstaden_read_la-error.o libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 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libstaden_read_la-files.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-files.Tpo .deps/libstaden_read_la-files.Plo /bin/sh ../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-find.lo -MD -MP -MF .deps/libstaden_read_la-find.Tpo -c -o libstaden_read_la-find.lo `test -f 'find.c' || echo './'`find.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-find.lo -MD -MP -MF .deps/libstaden_read_la-find.Tpo -c find.c -fPIC -DPIC -o .libs/libstaden_read_la-find.o libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-find.lo -MD -MP -MF .deps/libstaden_read_la-find.Tpo -c find.c -o libstaden_read_la-find.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-find.Tpo 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'./'`cram_decode.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_decode.lo -MD -MP -MF .deps/libstaden_read_la-cram_decode.Tpo -c cram_decode.c -fPIC -DPIC -o .libs/libstaden_read_la-cram_decode.o libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_decode.lo -MD -MP -MF .deps/libstaden_read_la-cram_decode.Tpo -c cram_decode.c -o libstaden_read_la-cram_decode.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-cram_decode.Tpo .deps/libstaden_read_la-cram_decode.Plo /bin/sh ../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_stats.lo -MD -MP -MF .deps/libstaden_read_la-cram_stats.Tpo -c -o libstaden_read_la-cram_stats.lo `test -f 'cram_stats.c' || echo './'`cram_stats.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_stats.lo -MD -MP -MF .deps/libstaden_read_la-cram_stats.Tpo -c cram_stats.c -fPIC -DPIC -o .libs/libstaden_read_la-cram_stats.o libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_stats.lo -MD -MP -MF .deps/libstaden_read_la-cram_stats.Tpo -c cram_stats.c -o libstaden_read_la-cram_stats.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-cram_stats.Tpo .deps/libstaden_read_la-cram_stats.Plo /bin/sh ../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_io.lo -MD -MP -MF .deps/libstaden_read_la-cram_io.Tpo -c -o libstaden_read_la-cram_io.lo `test -f 'cram_io.c' || echo './'`cram_io.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_io.lo -MD -MP -MF .deps/libstaden_read_la-cram_io.Tpo -c cram_io.c -fPIC -DPIC -o .libs/libstaden_read_la-cram_io.o cram_io.c: In function 'paranoid_fclose': cram_io.c:2292: warning: implicit declaration of function 'fsync' cram_io.c: In function 'cram_populate_ref': cram_io.c:2903: warning: implicit declaration of function 'unlink' cram_io.c: In function 'full_path': cram_io.c:4288: warning: implicit declaration of function 'getcwd' libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_io.lo -MD -MP -MF .deps/libstaden_read_la-cram_io.Tpo -c cram_io.c -o libstaden_read_la-cram_io.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-cram_io.Tpo .deps/libstaden_read_la-cram_io.Plo /bin/sh ../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_index.lo -MD -MP -MF .deps/libstaden_read_la-cram_index.Tpo -c -o libstaden_read_la-cram_index.lo `test -f 'cram_index.c' || echo './'`cram_index.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_index.lo -MD -MP -MF .deps/libstaden_read_la-cram_index.Tpo -c cram_index.c -fPIC -DPIC -o .libs/libstaden_read_la-cram_index.o cram_index.c: In function 'cram_index_load_private': cram_index.c:183: warning: 'e.nseq' is used uninitialized in this function libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_index.lo -MD -MP -MF .deps/libstaden_read_la-cram_index.Tpo -c cram_index.c -o libstaden_read_la-cram_index.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-cram_index.Tpo .deps/libstaden_read_la-cram_index.Plo /bin/sh ../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-zfio.lo -MD -MP -MF .deps/libstaden_read_la-zfio.Tpo -c -o libstaden_read_la-zfio.lo `test -f 'zfio.c' || echo './'`zfio.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-zfio.lo -MD -MP -MF .deps/libstaden_read_la-zfio.Tpo -c zfio.c -fPIC -DPIC -o .libs/libstaden_read_la-zfio.o libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-zfio.lo -MD -MP -MF .deps/libstaden_read_la-zfio.Tpo -c zfio.c -o libstaden_read_la-zfio.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-zfio.Tpo .deps/libstaden_read_la-zfio.Plo /bin/sh ../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-dstring.lo -MD -MP -MF .deps/libstaden_read_la-dstring.Tpo -c -o libstaden_read_la-dstring.lo `test -f 'dstring.c' || echo './'`dstring.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-dstring.lo -MD -MP -MF .deps/libstaden_read_la-dstring.Tpo -c dstring.c -fPIC -DPIC -o .libs/libstaden_read_la-dstring.o libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-dstring.lo -MD -MP -MF .deps/libstaden_read_la-dstring.Tpo -c dstring.c -o libstaden_read_la-dstring.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-dstring.Tpo .deps/libstaden_read_la-dstring.Plo /bin/sh ../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-string_alloc.lo -MD -MP -MF .deps/libstaden_read_la-string_alloc.Tpo -c -o libstaden_read_la-string_alloc.lo `test -f 'string_alloc.c' || echo './'`string_alloc.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-string_alloc.lo -MD -MP -MF .deps/libstaden_read_la-string_alloc.Tpo -c string_alloc.c -fPIC -DPIC -o .libs/libstaden_read_la-string_alloc.o libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-string_alloc.lo -MD -MP -MF .deps/libstaden_read_la-string_alloc.Tpo -c string_alloc.c -o libstaden_read_la-string_alloc.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-string_alloc.Tpo .deps/libstaden_read_la-string_alloc.Plo /bin/sh ../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-md5.lo -MD -MP -MF .deps/libstaden_read_la-md5.Tpo -c -o libstaden_read_la-md5.lo `test -f 'md5.c' || echo './'`md5.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-md5.lo -MD -MP -MF .deps/libstaden_read_la-md5.Tpo -c md5.c -fPIC -DPIC -o .libs/libstaden_read_la-md5.o libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-md5.lo -MD -MP -MF .deps/libstaden_read_la-md5.Tpo -c md5.c -o libstaden_read_la-md5.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-md5.Tpo .deps/libstaden_read_la-md5.Plo /bin/sh ../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-crc32.lo -MD -MP -MF .deps/libstaden_read_la-crc32.Tpo -c -o libstaden_read_la-crc32.lo `test -f 'crc32.c' || echo './'`crc32.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-crc32.lo -MD -MP -MF .deps/libstaden_read_la-crc32.Tpo -c crc32.c -fPIC -DPIC -o .libs/libstaden_read_la-crc32.o libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-crc32.lo -MD -MP -MF .deps/libstaden_read_la-crc32.Tpo -c crc32.c -o libstaden_read_la-crc32.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-crc32.Tpo .deps/libstaden_read_la-crc32.Plo /bin/sh ../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-scram.lo -MD -MP -MF .deps/libstaden_read_la-scram.Tpo -c -o libstaden_read_la-scram.lo `test -f 'scram.c' || echo './'`scram.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-scram.lo -MD -MP -MF .deps/libstaden_read_la-scram.Tpo -c scram.c -fPIC -DPIC -o .libs/libstaden_read_la-scram.o libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-scram.lo -MD -MP -MF .deps/libstaden_read_la-scram.Tpo -c scram.c -o libstaden_read_la-scram.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-scram.Tpo .deps/libstaden_read_la-scram.Plo /bin/sh ../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-thread_pool.lo -MD -MP -MF .deps/libstaden_read_la-thread_pool.Tpo -c -o libstaden_read_la-thread_pool.lo `test -f 'thread_pool.c' || echo './'`thread_pool.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-thread_pool.lo -MD -MP -MF .deps/libstaden_read_la-thread_pool.Tpo -c thread_pool.c -fPIC -DPIC -o .libs/libstaden_read_la-thread_pool.o libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-thread_pool.lo -MD -MP -MF .deps/libstaden_read_la-thread_pool.Tpo -c thread_pool.c -o libstaden_read_la-thread_pool.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-thread_pool.Tpo .deps/libstaden_read_la-thread_pool.Plo /bin/sh ../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-binning.lo -MD -MP -MF .deps/libstaden_read_la-binning.Tpo -c -o libstaden_read_la-binning.lo `test -f 'binning.c' || echo './'`binning.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-binning.lo -MD -MP -MF .deps/libstaden_read_la-binning.Tpo -c binning.c -fPIC -DPIC -o .libs/libstaden_read_la-binning.o libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-binning.lo -MD -MP -MF .deps/libstaden_read_la-binning.Tpo -c binning.c -o libstaden_read_la-binning.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-binning.Tpo .deps/libstaden_read_la-binning.Plo /bin/sh ../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_bambam.lo -MD -MP -MF .deps/libstaden_read_la-cram_bambam.Tpo -c -o libstaden_read_la-cram_bambam.lo `test -f 'cram_bambam.c' || echo './'`cram_bambam.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_bambam.lo -MD -MP -MF .deps/libstaden_read_la-cram_bambam.Tpo -c cram_bambam.c -fPIC -DPIC -o .libs/libstaden_read_la-cram_bambam.o libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-cram_bambam.lo -MD -MP -MF .deps/libstaden_read_la-cram_bambam.Tpo -c cram_bambam.c -o libstaden_read_la-cram_bambam.o >/dev/null 2>&1 mv -f .deps/libstaden_read_la-cram_bambam.Tpo .deps/libstaden_read_la-cram_bambam.Plo /bin/sh ../libtool --tag=CC --mode=compile /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-bgzip.lo -MD -MP -MF .deps/libstaden_read_la-bgzip.Tpo -c -o libstaden_read_la-bgzip.lo `test -f 'bgzip.c' || echo './'`bgzip.c libtool: compile: /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT libstaden_read_la-bgzip.lo -MD -MP -MF .deps/libstaden_read_la-bgzip.Tpo -c bgzip.c -fPIC -DPIC -o .libs/libstaden_read_la-bgzip.o bgzip.c: In function 'gzi_index_dump': bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long int') bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long int') bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long int') bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long int') bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long int') bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long int') bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long int') bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long long unsigned int') bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long int') bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long int') bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long int') bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long int') bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long int') bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long int') bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long int') bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long long unsigned int') bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long int') bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long int') bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long int') bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long int') bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long int') bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long int') bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long int') bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long long unsigned int') gmake[3]: *** [Makefile:1014: libstaden_read_la-bgzip.lo] Error 1 gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/iolib/work/io_lib-io_lib-1-14-9/io_lib' gmake[2]: *** [Makefile:746: all-recursive] Error 1 gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/iolib/work/io_lib-io_lib-1-14-9' gmake[1]: *** [Makefile:491: all] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/iolib/work/io_lib-io_lib-1-14-9' *** Error code 1 Stop. make: stopped in /usr/ports/biology/iolib
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