From nobody Fri Dec 17 06:00:04 2021 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id CA98D18F4B38; Fri, 17 Dec 2021 06:00:04 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4JFdcN40h2z4rmJ; Fri, 17 Dec 2021 06:00:04 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 6910316997; Fri, 17 Dec 2021 06:00:04 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 1BH6040C019120; Fri, 17 Dec 2021 06:00:04 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 1BH604nm019116; Fri, 17 Dec 2021 06:00:04 GMT (envelope-from git) Date: Fri, 17 Dec 2021 06:00:04 GMT Message-Id: <202112170600.1BH604nm019116@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Hiroki Tagato Subject: git: 7aa9a2125771 - main - math/polymake: update to 4.5 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: tagattie X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 7aa9a21257716a98264b77e7f69f9cb33d8f6b58 Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1639720804; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=3dBDAS1UKmjU9nXvz0Y7u+za5b0uVNDerHf4UeEW8zI=; b=akvB8NFktDQKCAkZP28MP6NVo0cZplWedKvx5//VRm83oNb6rlowalZQ3KuNUxUdxT9Tv7 /TEqtyYWcjoIK+1dRzg+CPatB9802/nWaHP1W/MMmbte9lj30W8abc4pSPEUDsZRlXHpBT Gk8j1Y7WKSl/Xwa28N1Xij8eATqvptLhMNHnN5fcp077LzMounf1e4JXVcUnN3MHoDsF/V 2zPLuK/lqZ/64nHDE4F4/9m7P7qzfRM9otfgJMC5DNBUzOKt18s3muVX30gwYws+qJXY15 rw1kA1t5H31oP4dXzCPC7FPXcMXJw23bmCJv795ZBxWzVS6xdZQ+qUvEn9zLlQ== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1639720804; a=rsa-sha256; cv=none; b=ZXgIyi0I9Zg4XytOBJTmmO/s2+EF2SnewM8uJutDj6iGfr3DpARgofZ0fFPZ5X+oUyLR3p 5IoZ0l9vBPH286tEDPUnpJE4V8bpbTIzE5jMJt/cHoSUz+y21rk2JSEP2PinFQv3raXOVO VQOFZ8tektbSAZZ/NTC7mg7nSGJ/+MENwiWJmclQJUtiAvM4haGnSEua2DskL6AVw2m2S2 KhCjv24kp1MP5tmULI/nAH/YQ5VFotqySJqkex/yuLZ80J1HtqrZ3D2mEdUTSPMnJzGVrZ adofOM4wwBviXfyZK1xLMkLPe4ycnE1AH3+1IULet+9EyMFfwAFaXC18gAy+lQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by tagattie: URL: https://cgit.FreeBSD.org/ports/commit/?id=7aa9a21257716a98264b77e7f69f9cb33d8f6b58 commit 7aa9a21257716a98264b77e7f69f9cb33d8f6b58 Author: Philipp Ost AuthorDate: 2021-12-17 05:57:44 +0000 Commit: Hiroki Tagato CommitDate: 2021-12-17 05:59:43 +0000 math/polymake: update to 4.5 Port changes: - update DISTVERSION (obviously ;-)) - remove compiler:openmp after commit 07fb2d5e9d001934f1670d01aec1f536f14ebde2 - remove patches patch-libnauty and patch-support_install.pl since they have been incorporated upstream Upstream changes: https://polymake.org/doku.php/news/release_4_5 PR: 260395 Reported by: Philipp Ost (maintainer) --- math/polymake/Makefile | 3 +- math/polymake/distinfo | 6 +- math/polymake/files/patch-libnauty | 208 --------------------------- math/polymake/files/patch-support_install.pl | 11 -- math/polymake/pkg-plist | 34 ++++- 5 files changed, 31 insertions(+), 231 deletions(-) diff --git a/math/polymake/Makefile b/math/polymake/Makefile index 4fe296db40e9..53532cc59619 100644 --- a/math/polymake/Makefile +++ b/math/polymake/Makefile @@ -1,8 +1,7 @@ # Created by: Ewgenij Gawrilow PORTNAME= polymake -DISTVERSION= 4.4 -PORTREVISION= 3 +DISTVERSION= 4.5 CATEGORIES= math MASTER_SITES= https://polymake.org/lib/exe/fetch.php/download/ DISTNAME= ${PORTNAME}-${DISTVERSION}-minimal diff --git a/math/polymake/distinfo b/math/polymake/distinfo index 1148014eeb28..5ba94b51eda0 100644 --- a/math/polymake/distinfo +++ b/math/polymake/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1622150271 -SHA256 (polymake-4.4-minimal.tar.bz2) = da7179176c739c8efba65d93b25af103c1cba70e1f9b35673ce33c37790ec091 -SIZE (polymake-4.4-minimal.tar.bz2) = 5620609 +TIMESTAMP = 1633023218 +SHA256 (polymake-4.5-minimal.tar.bz2) = e943d4bb31c112fad852340e3595bc591c2070692a16d50183a3b104566d7996 +SIZE (polymake-4.5-minimal.tar.bz2) = 5634046 diff --git a/math/polymake/files/patch-libnauty b/math/polymake/files/patch-libnauty deleted file mode 100644 index 5fdcada7fc95..000000000000 --- a/math/polymake/files/patch-libnauty +++ /dev/null @@ -1,208 +0,0 @@ -- patch from the upstream allowing to link to libnauty.so: https://github.com/polymake/polymake/issues/10#issuecomment-906184045 -- updated to fix a testsuite regression: https://forum.polymake.org/viewtopic.php?f=10&p=3838#p3838 - -commit 3d5f15812247c37e1821d30a24e69acc308bc54b -Author: Benjamin Lorenz -Date: Tue Aug 24 21:20:40 2021 +0200 - - bundled/nauty: add support for libnauty installation to configuration - - in addition to bundled and source-dir - - without any options this will try to run a test-program and fall back - to the bundled nauty if that fails. - ---- bundled/nauty/apps/graph/src/GraphIso.cc.orig 2021-05-18 08:50:05 UTC -+++ bundled/nauty/apps/graph/src/GraphIso.cc -@@ -29,8 +29,8 @@ - #define set nauty_set - #define permutation nauty_permutation - --#include --#include -+#include -+#include - #include - - namespace { ---- bundled/nauty/apps/graph/src/build_flags.pl.orig 2021-05-18 08:50:05 UTC -+++ bundled/nauty/apps/graph/src/build_flags.pl -@@ -1,6 +1,6 @@ - # input for generate_ninja_targets.pl - --my $foreign_src = $ConfigFlags{'bundled.nauty.NautySrc'}; -+my $foreign_src = $ConfigFlags{'bundled.nauty.NautySrc'} ne "bundled" && $ConfigFlags{'bundled.nauty.NautySrc'}; - my $nauty_src = $foreign_src ? '${bundled.nauty.NautySrc}' : '${root}/bundled/nauty/external/nauty'; - my $generated_dir = '${buildroot}/staticlib/nauty'; - my @generated_headers = qw( nauty.h naututil.h gtools.h ); -@@ -9,17 +9,21 @@ my @generated_out = map { "$generated_dir/$_" } @gener - my $include_generated = ($foreign_src && grep { -f "$foreign_src/$_" } @generated_headers) - ? join(" ", map { "-include $_" } @generated_out) - : "-I$generated_dir"; -+my $nauty_inc = $ConfigFlags{'bundled.nauty.NautySrc'} -+ ? " -I$generated_dir -I$nauty_src" -+ : ""; - --( CXXFLAGS => "-DBIGNAUTY -I$generated_dir -I$nauty_src", -+( 'GraphIso.cc' => $nauty_inc, - -- GENERATED => { -- out => "@generated_out", in => "@generated_in", -- command => "cd $generated_dir; CC=\"\${CC}\" CFLAGS=\"\${CFLAGS}\" $nauty_src/configure --quiet >/dev/null 2>/dev/null; rm -f makefile", -- }, -- -- staticlib => { -- SOURCEDIR => $nauty_src, -- SOURCES => [ qw(naugraph.c naurng.c nausparse.c nautaux.c nautil.c nautinv.c naututil.c nauty.c rng.c schreier.c) ], -- CFLAGS => "-DBIGNAUTY $include_generated -I$nauty_src", -- } -+ $ConfigFlags{'bundled.nauty.NautySrc'} -+ ? ( GENERATED => { -+ out => "@generated_out", in => "@generated_in", -+ command => "cd $generated_dir; CC=\"\${CC}\" CFLAGS=\"\${CFLAGS}\" $nauty_src/configure --quiet >/dev/null 2>/dev/null; rm -rf makefile nauty; ln -s . nauty", -+ }, -+ staticlib => { -+ SOURCEDIR => $nauty_src, -+ SOURCES => [ qw(naugraph.c naurng.c nausparse.c nautaux.c nautil.c nautinv.c naututil.c nauty.c rng.c schreier.c) ], -+ CFLAGS => "$include_generated -I$nauty_src", -+ } ) -+ : () - ) ---- bundled/nauty/support/configure.pl.orig 2021-05-18 08:50:05 UTC -+++ bundled/nauty/support/configure.pl -@@ -14,19 +14,19 @@ - # GNU General Public License for more details. - #------------------------------------------------------------------------------- - --@conf_vars=qw( NautySrc ); -+@conf_vars=qw( NautySrc CXXFLAGS LDFLAGS LIBS ); - - sub allowed_options { - my ($allowed_options, $allowed_with)=@_; -- @$allowed_with{ qw( nauty-src ) }=(); -+ @$allowed_with{ qw( nauty-src nauty ) }=(); - } - - - sub usage { -- print STDERR " --with-nauty-src=PATH Source directory of nauty.\n", -- " By default polymake will use the bundled nauty source files,\n", -- " for the minimal tarball this option allows using a custom\n", -- " directory containing the nauty sources.\n"; -+ print STDERR " By default polymake will use the bundled nauty source files,\n", -+ " these options allow using a custom nauty source or installation:\n", -+ " --with-nauty-src=PATH Source directory of nauty.\n", -+ " --with-nauty=PATH Installation prefix of nauty.\n"; - } - - sub check_nauty { -@@ -36,17 +36,101 @@ sub check_nauty { - - sub proceed { - my ($options)=@_; -- my $nautysrc; -- if (defined ($nautysrc=$options->{"nauty-src"})) { -- check_nauty($nautysrc) or -- die "Specified nauty source directory invalid, could not find 'nauty-h.in'."; -- $NautySrc = $nautysrc; -- } elsif (!check_nauty()) { -+ my $nauty_path; -+ my $nauty_src; -+ my $nautyver; -+ $NautySrc = "bundled"; -+ if (defined ($nauty_path=$options->{nauty}) && $nauty_path ne "bundled") { -+ my $nauty_inc="$nauty_path/include"; -+ my $nauty_lib=Polymake::Configure::get_libdir($nauty_path, "nauty"); -+ unless (-f "$nauty_inc/nauty/nauty.h" -+ && ( -f "$nauty_lib/libnauty.$Config::Config{dlext}" -+ || -f "$nauty_lib/libnauty.a" ) ) { -+ die "Invalid installation location of nauty library: header file nauty/nauty.h and/or library libnauty.$Config::Config{dlext} / libnauty.a not found\n"; -+ } -+ $LDFLAGS.=" -Wl,-rpath,$nauty_lib" -+ if $nauty_path !~ m|^/usr$| && -f "$nauty_lib/libnauty.$Config::Config{dlext}"; -+ $CXXFLAGS = "-I$nauty_inc"; -+ $LDFLAGS = "-L$nauty_lib"; -+ undef $NautySrc; -+ } elsif (defined ($nauty_src=$options->{"nauty-src"}) && $nauty_src ne "bundled") { -+ check_nauty($nauty_src) or -+ die "Specified nauty source directory invalid, could not find 'nauty-h.in' in $nauty_src."; -+ $NautySrc = "$nauty_src"; -+ } -+ -+ if (!$nauty_src && $nauty_path ne "bundled" && $options->{prereq} ne ".none.") { -+ # compile test-program, soft-fail -+ my $testcode = <<'---'; -+// simplified example from nautyex1.c from the nauty source -+ -+#define MAXN 1000 /* Define this before including nauty.h */ -+#include -+#include -+ -+int -+main(int argc, char *argv[]) -+{ -+ graph g[MAXN*MAXM]; -+ int lab[MAXN],ptn[MAXN],orbits[MAXN]; -+ static DEFAULTOPTIONS_GRAPH(options); -+ statsblk stats; -+ int n = 5; -+ int m = 1; -+ int v; -+ -+ options.writeautoms = FALSE; -+ -+ /* The following optional call verifies that we are linking -+ to compatible versions of the nauty routines. */ -+ -+ nauty_check(WORDSIZE,m,n,NAUTYVERSIONID); -+ EMPTYGRAPH(g,m,n); -+ for (v = 0; v < n; ++v) ADDONEEDGE(g,v,(v+1)%n,m); -+ -+ densenauty(g,lab,ptn,orbits,&options,&stats,m,n,NULL); -+ std::cout << "VERSION " << NAUTYVERSIONID << std::endl; -+ -+ exit(0); -+} -+--- -+ my $error=Polymake::Configure::build_test_program($testcode, LIBS => "-lnauty", CXXFLAGS => "$CXXFLAGS", LDFLAGS => "$LDFLAGS"); -+ -+ if ($? == 0) { -+ my $message=Polymake::Configure::run_test_program(); -+ if ($?) { -+ check_nauty() and !defined($nauty_path) or -+ die "Could not run a test program checking for nauty library.\n", -+ "The complete error log follows:\n\n$message\n", -+ "Please investigate the reasons and fix the installation.\n"; -+ } else { -+ ($nautyver) = $message =~ /VERSION (\d+)/; -+ my $nautymin = 25000; # version*10000 -+ if ($nautyver < $nautymin) { -+ check_nauty() and !defined($nauty_path) or -+ die "Your nauty version $nautyver is too old, at least version $nautymin is required.\n"; -+ } else { -+ undef $NautySrc; -+ } -+ } -+ } else { -+ check_nauty() and !defined($nauty_path) or -+ die "Could not compile a test program checking for nauty.\n", -+ "The most probable reasons are that the library is installed at a non-standard location,\n", -+ "is not configured to build a shared module, or missing at all.\n", -+ "The complete error log follows:\n\n$error\n", -+ "Please install the library and specify its location using --with-nauty option, if needed.\n"; -+ } -+ } -+ -+ if ($NautySrc eq "bundled" && !check_nauty()) { - die "Bundled nauty directory seems to be missing, to use the nauty interface\n", - "with the minimal tarball please specify a nauty source directory\n", -- "via --with-nauty-src=PATH."; -+ "via --with-nauty-src=PATH, or a nauty installation with --with-nauty=PATH."; -+ } elsif (!defined($NautySrc)) { -+ $LIBS = "-lnauty"; - } - -- return $NautySrc ? "$NautySrc" : "bundled"; -+ return $NautySrc ? "source: $NautySrc" : ("version $nautyver @ ".($nauty_path//"system")); - } - diff --git a/math/polymake/files/patch-support_install.pl b/math/polymake/files/patch-support_install.pl deleted file mode 100644 index 87b3cd70b0e3..000000000000 --- a/math/polymake/files/patch-support_install.pl +++ /dev/null @@ -1,11 +0,0 @@ ---- support/install.pl.orig 2021-05-18 08:50:05 UTC -+++ support/install.pl -@@ -316,7 +316,7 @@ sub rel_symlink { - my $rel_link = $link; - my $common_prefix = 1; - while ($rel_link =~ s{^(/[^/]+)(?=/)}{}) { -- if ($common_prefix && substr($target, 0, length($1)) eq $1) { -+ if ($common_prefix && substr($target, 0, length($1)+1) eq "$1/") { - $target = substr($target, length($1)); - } else { - $common_prefix = 0; diff --git a/math/polymake/pkg-plist b/math/polymake/pkg-plist index b4882de8b653..1e65a6fdf264 100644 --- a/math/polymake/pkg-plist +++ b/math/polymake/pkg-plist @@ -61,6 +61,7 @@ include/polymake/common/TOmath_decl.h include/polymake/common/bounding_box.h include/polymake/common/factorization.h include/polymake/common/find_matrix_row_permutation.h +include/polymake/common/finiteFieldLA.h include/polymake/common/hadamard_product.h include/polymake/common/incidence_tools.h include/polymake/common/labels.h @@ -79,6 +80,7 @@ include/polymake/fan/intersection.h include/polymake/fan/next/compactification.h include/polymake/fan/reverse_search_chamber_decomposition.h include/polymake/fan/stacky_fan.h +include/polymake/fan/stacky_fundamental_domain.h include/polymake/fan/tight_span.h include/polymake/graph/BasicLatticeTypes.h include/polymake/graph/Closure.h @@ -101,6 +103,7 @@ include/polymake/graph/bipartite.h include/polymake/graph/bipartite.tcc include/polymake/graph/compare.h include/polymake/graph/connected.h +include/polymake/graph/conway_impl.h include/polymake/graph/diameter.h include/polymake/graph/graph_iterators.h include/polymake/graph/hungarian_method.h @@ -113,6 +116,7 @@ include/polymake/graph/max_cliques.h include/polymake/graph/max_cliques.tcc include/polymake/graph/maximal_chains.h include/polymake/graph/next/Decoration.h +include/polymake/graph/next/DoublyConnectedEdgeList.h include/polymake/graph/poset_tools.h include/polymake/graph/strong_connected.h include/polymake/group/action.h @@ -328,6 +332,7 @@ include/polymake/tropical/cartesian_product.h include/polymake/tropical/codim_one_with_locality.h include/polymake/tropical/convex_hull_tools.h include/polymake/tropical/covectors.h +include/polymake/tropical/curve.h include/polymake/tropical/cyclic_chains.h include/polymake/tropical/divisor.h include/polymake/tropical/double_description.h @@ -350,6 +355,7 @@ include/polymake/tropical/morphism_values.h include/polymake/tropical/next/covectors.h include/polymake/tropical/patchwork.h include/polymake/tropical/polynomial_tools.h +include/polymake/tropical/polynomial_vanishing.h include/polymake/tropical/pruefer.h include/polymake/tropical/psi_classes.h include/polymake/tropical/pullback.h @@ -364,13 +370,13 @@ include/polymake/type_utils.h include/polymake/vector lib/libpolymake-apps-rt.so lib/libpolymake-apps-rt.so.4 -lib/libpolymake-apps-rt.so.4.4 +lib/libpolymake-apps-rt.so.4.5 lib/libpolymake-apps.so lib/libpolymake-apps.so.4 -lib/libpolymake-apps.so.4.4 +lib/libpolymake-apps.so.4.5 lib/libpolymake.so lib/libpolymake.so.4 -lib/libpolymake.so.4.4 +lib/libpolymake.so.4.5 libexec/polymake/config.ninja libexec/polymake/lib/common.so libexec/polymake/lib/fan.so @@ -380,10 +386,10 @@ libexec/polymake/lib/group.so libexec/polymake/lib/ideal.so libexec/polymake/lib/libpolymake-apps-rt.so libexec/polymake/lib/libpolymake-apps-rt.so.4 -libexec/polymake/lib/libpolymake-apps-rt.so.4.4 +libexec/polymake/lib/libpolymake-apps-rt.so.4.5 libexec/polymake/lib/libpolymake-apps.so libexec/polymake/lib/libpolymake-apps.so.4 -libexec/polymake/lib/libpolymake-apps.so.4.4 +libexec/polymake/lib/libpolymake-apps.so.4.5 libexec/polymake/lib/matroid.so libexec/polymake/lib/polytope.so libexec/polymake/lib/topaz.so @@ -515,7 +521,6 @@ libexec/polymake/shared %%DATADIR%%/apps/fan/src/remove_redundancies.cc %%DATADIR%%/apps/fan/src/reverse_search_chamber_decomposition.cc %%DATADIR%%/apps/fan/src/secondary_fan.cc -%%DATADIR%%/apps/fan/src/stacky_fan.cc %%DATADIR%%/apps/fan/src/stacky_fundamental_domain.cc %%DATADIR%%/apps/fan/src/tight_span.cc %%DATADIR%%/apps/fan/src/tiling_quotient.cc @@ -541,6 +546,7 @@ libexec/polymake/shared %%DATADIR%%/apps/graph/perllib/Visual/Lattice.pm %%DATADIR%%/apps/graph/rules/common.rules %%DATADIR%%/apps/graph/rules/compare.rules +%%DATADIR%%/apps/graph/rules/doubly_connected_edge_list.rules %%DATADIR%%/apps/graph/rules/geometric_graph.rules %%DATADIR%%/apps/graph/rules/graph_properties.rules %%DATADIR%%/apps/graph/rules/graphviz.rules @@ -598,7 +604,6 @@ libexec/polymake/shared %%DATADIR%%/apps/group/rules/help.rules %%DATADIR%%/apps/group/rules/main.rules %%DATADIR%%/apps/group/rules/permlib.rules -%%DATADIR%%/apps/group/rules/polytope_group.rules %%DATADIR%%/apps/group/rules/switch_table.rules %%DATADIR%%/apps/group/src/col_to_row_action.cc %%DATADIR%%/apps/group/src/conjugacy_classes.cc @@ -781,6 +786,7 @@ libexec/polymake/shared %%DATADIR%%/apps/polytope/src/centroid_volume.cc %%DATADIR%%/apps/polytope/src/check_inc.cc %%DATADIR%%/apps/polytope/src/check_poly.cc +%%DATADIR%%/apps/polytope/src/chirotope.cc %%DATADIR%%/apps/polytope/src/circuit_completions.cc %%DATADIR%%/apps/polytope/src/cocircuit_equations.cc %%DATADIR%%/apps/polytope/src/common_refinement.cc @@ -788,6 +794,7 @@ libexec/polymake/shared %%DATADIR%%/apps/polytope/src/congruent_polytopes.cc %%DATADIR%%/apps/polytope/src/contains.cc %%DATADIR%%/apps/polytope/src/conv.cc +%%DATADIR%%/apps/polytope/src/conway.cc %%DATADIR%%/apps/polytope/src/core_point_algo.cc %%DATADIR%%/apps/polytope/src/cross.cc %%DATADIR%%/apps/polytope/src/crosscut_complex.cc @@ -854,6 +861,7 @@ libexec/polymake/shared %%DATADIR%%/apps/polytope/src/lattice_normalization.cc %%DATADIR%%/apps/polytope/src/lattice_pyramid.cc %%DATADIR%%/apps/polytope/src/lineality_via_lp.cc +%%DATADIR%%/apps/polytope/src/linear_symmetries_matrix.cc %%DATADIR%%/apps/polytope/src/long_and_winding.cc %%DATADIR%%/apps/polytope/src/mapping_polytope.cc %%DATADIR%%/apps/polytope/src/massive_gkz.cc @@ -864,6 +872,7 @@ libexec/polymake/shared %%DATADIR%%/apps/polytope/src/minkowski_sum.cc %%DATADIR%%/apps/polytope/src/mixed_integer_hull.cc %%DATADIR%%/apps/polytope/src/mixed_volume.cc +%%DATADIR%%/apps/polytope/src/mps2poly.cc %%DATADIR%%/apps/polytope/src/multiplex.cc %%DATADIR%%/apps/polytope/src/n_fine_triangulations.cc %%DATADIR%%/apps/polytope/src/n_gon.cc @@ -882,6 +891,7 @@ libexec/polymake/shared %%DATADIR%%/apps/polytope/src/polarize.cc %%DATADIR%%/apps/polytope/src/poly2lp.cc %%DATADIR%%/apps/polytope/src/poly2metric.cc +%%DATADIR%%/apps/polytope/src/poly2mps.cc %%DATADIR%%/apps/polytope/src/polynomial_conversion.cc %%DATADIR%%/apps/polytope/src/print_constraints.cc %%DATADIR%%/apps/polytope/src/prism.cc @@ -1059,6 +1069,7 @@ libexec/polymake/shared %%DATADIR%%/apps/tropical/rules/cone.rules %%DATADIR%%/apps/tropical/rules/cone_properties.rules %%DATADIR%%/apps/tropical/rules/covector_lattice.rules +%%DATADIR%%/apps/tropical/rules/curve.rules %%DATADIR%%/apps/tropical/rules/cycle.rules %%DATADIR%%/apps/tropical/rules/gfan.rules %%DATADIR%%/apps/tropical/rules/help.rules @@ -1079,6 +1090,7 @@ libexec/polymake/shared %%DATADIR%%/apps/tropical/src/compute_maximal_covectors.cc %%DATADIR%%/apps/tropical/src/covector_decomposition.cc %%DATADIR%%/apps/tropical/src/covectors.cc +%%DATADIR%%/apps/tropical/src/curve.cc %%DATADIR%%/apps/tropical/src/cycle_edge_lengths.cc %%DATADIR%%/apps/tropical/src/cyclic.cc %%DATADIR%%/apps/tropical/src/discard_non_vertices.cc @@ -1099,9 +1111,12 @@ libexec/polymake/shared %%DATADIR%%/apps/tropical/src/map_perm.cc %%DATADIR%%/apps/tropical/src/matroid_polytope.cc %%DATADIR%%/apps/tropical/src/minkowski_sum.cc +%%DATADIR%%/apps/tropical/src/moduli_cell_of_curve.cc +%%DATADIR%%/apps/tropical/src/moduli_space_of_curve.cc %%DATADIR%%/apps/tropical/src/nearest_point.cc %%DATADIR%%/apps/tropical/src/patchwork.cc %%DATADIR%%/apps/tropical/src/points2hypersurface.cc +%%DATADIR%%/apps/tropical/src/polynomial_vanishing.cc %%DATADIR%%/apps/tropical/src/thomog.cc %%DATADIR%%/apps/tropical/src/tpluecker.cc %%DATADIR%%/apps/tropical/src/tropicalNorm.cc @@ -1198,6 +1213,8 @@ libexec/polymake/shared %%DATADIR%%/bundled/flint/apps/common/src/QuadraticExtension.cc %%DATADIR%%/bundled/flint/apps/common/src/factorization.cc %%DATADIR%%/bundled/flint/apps/common/src/sum_of_square_roots_naive.cc +%%DATADIR%%/bundled/flint/apps/matroid/rules/main.rules +%%DATADIR%%/bundled/flint/apps/matroid/src/bases_from_points_flint.cc %%DATADIR%%/bundled/flint/apps/polytope/src/maximal_ball.cc %%DATADIR%%/bundled/flint/apps/topaz/rules/main.rules %%DATADIR%%/bundled/flint/apps/topaz/src/homology_flint.cc @@ -1273,6 +1290,7 @@ libexec/polymake/shared %%DATADIR%%/demo/files/json_and_polydb/polydb_meta/Polytopes/01Polytopes/schema.2.1.json %%DATADIR%%/demo/files/json_and_polydb/polydb_meta/Polytopes/Polytopes.2.1.json %%DATADIR%%/demo/files/optimization/c3t.lp + %%DATADIR%%/demo/files/optimization/c3t.mps %%DATADIR%%/demo/files/optimization/lpclosure.pl %%DATADIR%%/demo/files/optimization/mip.lp %%DATADIR%%/demo/files/optimization/stab.lp @@ -1473,6 +1491,7 @@ libexec/polymake/shared %%DATADIR%%/upgrades/4.2 %%DATADIR%%/upgrades/4.3 %%DATADIR%%/upgrades/4.4 +%%DATADIR%%/upgrades/4.5 %%DATADIR%%/upgrades/big_objects-2.10.1 %%DATADIR%%/upgrades/big_objects-2.11.1 %%DATADIR%%/upgrades/big_objects-2.12.1 @@ -1488,6 +1507,7 @@ libexec/polymake/shared %%DATADIR%%/upgrades/big_objects-4.2.1 %%DATADIR%%/upgrades/big_objects-4.3.1 %%DATADIR%%/upgrades/big_objects-4.3.3 +%%DATADIR%%/upgrades/big_objects-4.4.1 @dir libexec/polymake/bundled/atint %%BLISS%%@dir libexec/polymake/bundled/bliss @dir libexec/polymake/bundled/cdd