Date: Thu, 04 Aug 2016 04:36:51 +0000 From: bugzilla-noreply@freebsd.org To: freebsd-ports-bugs@FreeBSD.org Subject: [Bug 211393] math/R: update patches and options Message-ID: <bug-211393-13-7ovj5x3MtL@https.bugs.freebsd.org/bugzilla/> In-Reply-To: <bug-211393-13@https.bugs.freebsd.org/bugzilla/> References: <bug-211393-13@https.bugs.freebsd.org/bugzilla/>
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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D211393 Joseph Mingrone <jrm@ftfl.ca> changed: What |Removed |Added ---------------------------------------------------------------------------- Attachment #173182|0 |1 is obsolete| | Attachment #173265| |maintainer-approval+ Flags| | --- Comment #10 from Joseph Mingrone <jrm@ftfl.ca> --- Created attachment 173265 --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=3D173265&action= =3Dedit svn diff #4: redo diff after other commits to math/R There were other commits to math/R, so redo this patch. I've also attempted to reduce disruption with these changes, but still perm= it clang to build on 10+ by updating compiler.mk with # Compiler settings required for R and the R-cran ports. .if ${OPSYS} =3D=3D FreeBSD .if ${OSVERSION} < 1000015 USE_GCC=3D yes .endif .endif I tested all ports that have USES=3D cran:compiles and they all built successfully, so I think this patch is ready unless anyone (wen@? tota@?) h= as issues. Thanks to rhurlin@gwdg.de for testing. Build logs using default options: math/R http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_01h23m39s= /logs/R-3.3.1_2.log http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_01h23m40= s/logs/R-3.3.1_2.log http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_01h23m42= s/logs/R-3.3.1_2.log http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_01h23m4= 4s/logs/R-3.3.1_2.log Build logs for ports with USES=3Dcran:compiles math/R-cran-lme4 http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-03_23h08m45s= /logs/R-cran-lme4-1.1.12.log http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-03_23h08m53= s/logs/R-cran-lme4-1.1.12.log http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-03_23h08m59= s/logs/R-cran-lme4-1.1.12.log http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-03_23h09m0= 5s/logs/R-cran-lme4-1.1.12.log math/R-cran-memisc http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-03_23h23m28s= /logs/R-cran-memisc-0.99.7.1.log http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-03_23h23m37= s/logs/R-cran-memisc-0.99.7.1.log http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-03_23h23m42= s/logs/R-cran-memisc-0.99.7.1.log http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-03_23h23m4= 7s/logs/R-cran-memisc-0.99.7.1.log math/R-cran-spdep http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-03_23h27m19s= /logs/R-cran-spdep-0.6.6.log http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-03_23h27m25= s/logs/R-cran-spdep-0.6.6.log http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-03_23h27m31= s/logs/R-cran-spdep-0.6.6.log http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-03_23h27m3= 6s/logs/R-cran-spdep-0.6.6.log math/R-cran-MCMCpack http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-03_23h37m50s= /logs/R-cran-MCMCpack-1.3.6.log http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-03_23h37m55= s/logs/R-cran-MCMCpack-1.3.6.log http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-03_23h37m59= s/logs/R-cran-MCMCpack-1.3.6.log http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-03_23h38m0= 5s/logs/R-cran-MCMCpack-1.3.6.log math/R-cran-influenceR http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_00h18m40s= /logs/R-cran-influenceR-0.1.0.log http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_00h18m44= s/logs/R-cran-influenceR-0.1.0.log http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-03_23h46m17= s/logs/R-cran-influenceR-0.1.0.log http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-03_23h46m2= 3s/logs/R-cran-influenceR-0.1.0.log math/R-cran-mcmc http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_00h27m07s= /logs/R-cran-mcmc-0.9.4.log http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_00h27m14= s/logs/R-cran-mcmc-0.9.4.log http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_00h27m19= s/logs/R-cran-mcmc-0.9.4.log http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_00h27m2= 3s/logs/R-cran-mcmc-0.9.4.log math/R-cran-RcppArmadillo http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_00h31m05s= /logs/R-cran-RcppArmadillo-0.7.200.2.0.log http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_00h31m11= s/logs/R-cran-RcppArmadillo-0.7.200.2.0.log http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_00h31m16= s/logs/R-cran-RcppArmadillo-0.7.200.2.0.log http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_00h31m2= 2s/logs/R-cran-RcppArmadillo-0.7.200.2.0.log science/R-cran-som http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_00h34m46s= /logs/R-cran-som-0.3.5.1.log http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_00h34m54= s/logs/R-cran-som-0.3.5.1.log http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_00h35m00= s/logs/R-cran-som-0.3.5.1.log http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_00h35m0= 5s/logs/R-cran-som-0.3.5.1.log textproc/R-cran-xml2 http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_00h37m07s= /logs/R-cran-xml2-1.0.0.log http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_00h37m12= s/logs/R-cran-xml2-1.0.0.log http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_00h37m17= s/logs/R-cran-xml2-1.0.0.log http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_00h37m2= 3s/logs/R-cran-xml2-1.0.0.log ftp/R-cran-curl http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_00h42m08s= /logs/R-cran-curl-1.1.log http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_00h42m12= s/logs/R-cran-curl-1.1.log http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_00h42m17= s/logs/R-cran-curl-1.1.log http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_00h42m2= 3s/logs/R-cran-curl-1.1.log misc/R-cran-mime http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_00h44m18s= /logs/R-cran-mime-0.5.log http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_00h44m24= s/logs/R-cran-mime-0.5.log http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_00h44m28= s/logs/R-cran-mime-0.5.log http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_00h44m3= 3s/logs/R-cran-mime-0.5.log devel/R-cran-Rcpp http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_00h48m46s= /logs/R-cran-Rcpp-0.12.6.log http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_00h48m50= s/logs/R-cran-Rcpp-0.12.6.log http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_00h48m53= s/logs/R-cran-Rcpp-0.12.6.log http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_00h48m5= 8s/logs/R-cran-Rcpp-0.12.6.log devel/R-cran-tibble http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_00h51m42s= /logs/R-cran-tibble-1.1.log http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_00h51m47= s/logs/R-cran-tibble-1.1.log http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_00h51m51= s/logs/R-cran-tibble-1.1.log http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_00h51m5= 9s/logs/R-cran-tibble-1.1.log finance/R-cran-tseries http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_00h57m37s= /logs/R-cran-tseries-0.10.35_1.log http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_00h57m41= s/logs/R-cran-tseries-0.10.35_1.log http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_00h57m45= s/logs/R-cran-tseries-0.10.35_1.log http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_00h57m5= 1s/logs/R-cran-tseries-0.10.35_1.log converters/R-cran-jsonlite http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_01h01m52s= /logs/R-cran-jsonlite-1.0.log http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_01h01m56= s/logs/R-cran-jsonlite-1.0.log http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_01h02m01= s/logs/R-cran-jsonlite-1.0.log http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_01h02m0= 6s/logs/R-cran-jsonlite-1.0.log converters/R-cran-base64enc http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_01h05m34s= /logs/R-cran-base64enc-0.1.3.log http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_01h05m38= s/logs/R-cran-base64enc-0.1.3.log http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_01h05m42= s/logs/R-cran-base64enc-0.1.3.log http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_01h05m4= 7s/logs/R-cran-base64enc-0.1.3.log --=20 You are receiving this 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