Date: Tue, 16 Mar 2021 17:33:34 GMT From: pkg-fallout@FreeBSD.org To: sunpoet@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - 130releng-amd64-default][math/py-hdbscan] Failed for py37-hdbscan-0.8.27 in run-depends Message-ID: <202103161733.12GHXY4k076044@beefy16.nyi.freebsd.org>
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Maintainer: sunpoet@FreeBSD.org Last committer: sunpoet@FreeBSD.org Ident: $FreeBSD: head/math/py-hdbscan/Makefile 565617 2021-02-17 18:08:44Z sunpoet $ Log URL: http://beefy16.nyi.freebsd.org/data/130releng-amd64-default/568533/logs/py37-hdbscan-0.8.27.log Build URL: http://beefy16.nyi.freebsd.org/build.html?mastername=130releng-amd64-default&build=568533 Log: =>> Building math/py-hdbscan build started at Tue Mar 16 17:32:46 UTC 2021 port directory: /usr/ports/math/py-hdbscan package name: py37-hdbscan-0.8.27 building for: FreeBSD 130releng-amd64-default-job-08 13.0-RC2 FreeBSD 13.0-RC2 1300139 amd64 maintained by: sunpoet@FreeBSD.org Makefile ident: $FreeBSD: head/math/py-hdbscan/Makefile 565617 2021-02-17 18:08:44Z sunpoet $ Poudriere version: 3.2.8-8-gaf08dbda Host OSVERSION: 1400000 Jail OSVERSION: 1300139 Job Id: 08 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300139 UNAME_v=FreeBSD 13.0-RC2 1300139 UNAME_r=13.0-RC2 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-8-gaf08dbda MASTERMNT=/usr/local/poudriere/data/.m/130releng-amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/130releng-amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=130releng-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/130releng-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py37 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py37 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- sunpoet@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-hdbscan/work-py37 XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-hdbscan/work-py37 HOME=/wrkdirs/usr/ports/math/py-hdbscan/work-py37 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-hdbscan/work-py37/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-hdbscan/work-py37 XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-hdbscan/work-py37 HOME=/wrkdirs/usr/ports/math/py-hdbscan/work-py37 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-hdbscan/work-py37/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_EXT_SUFFIX= PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/hdbscan" EXAMPLESDIR="share/examples/hdbscan" DATADIR="share/hdbscan" WWWDIR="www/hdbscan" ETCDIR="etc/hdbscan" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/hdbscan DOCSDIR=/usr/local/share/doc/hdbscan EXAMPLESDIR=/usr/local/share/examples/hdbscan WWWDIR=/usr/local/www/hdbscan ETCDIR=/usr/local/etc/hdbscan --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=13.0-RC2 OSREL=13.0 OSVERSION=1300139 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License BSD3CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> py37-hdbscan-0.8.27 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.16.3.txz [130releng-amd64-default-job-08] Installing pkg-1.16.3... [130releng-amd64-default-job-08] Extracting pkg-1.16.3: .......... done ===> py37-hdbscan-0.8.27 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py37-hdbscan-0.8.27 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py37-hdbscan-0.8.27 for building =========================================================================== =======================<phase: checksum >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py37-hdbscan-0.8.27 for building => SHA256 Checksum OK for hdbscan-0.8.27.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py37-hdbscan-0.8.27 for building ===> Extracting for py37-hdbscan-0.8.27 => SHA256 Checksum OK for hdbscan-0.8.27.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for py37-hdbscan-0.8.27 =========================================================================== =======================<phase: build-depends >============================ ===> py37-hdbscan-0.8.27 depends on package: py37-numpy>=1.16,1 - not found ===> Installing existing package /packages/All/py37-numpy-1.16.6,1.txz [130releng-amd64-default-job-08] Installing py37-numpy-1.16.6,1... [130releng-amd64-default-job-08] `-- Installing gcc10-10.2.0... [130releng-amd64-default-job-08] | `-- Installing binutils-2.33.1_4,1... [130releng-amd64-default-job-08] | | `-- Installing gettext-runtime-0.21... [130releng-amd64-default-job-08] | | `-- Installing indexinfo-0.3.1... [130releng-amd64-default-job-08] | | `-- Extracting indexinfo-0.3.1: .... done [130releng-amd64-default-job-08] | | `-- Extracting gettext-runtime-0.21: .......... done [130releng-amd64-default-job-08] | `-- Extracting binutils-2.33.1_4,1: .......... done [130releng-amd64-default-job-08] | `-- Installing gmp-6.2.1... [130releng-amd64-default-job-08] | `-- Extracting gmp-6.2.1: .......... done [130releng-amd64-default-job-08] | `-- Installing mpc-1.1.0_2... [130releng-amd64-default-job-08] | | `-- Installing mpfr-4.1.0... [130releng-amd64-default-job-08] | | `-- Extracting mpfr-4.1.0: .......... done [130releng-amd64-default-job-08] | `-- Extracting mpc-1.1.0_2: ......... done [130releng-amd64-default-job-08] `-- Extracting gcc10-10.2.0: .......... done [130releng-amd64-default-job-08] `-- Installing openblas-0.3.13_1,1... <snip> ===== Message from gcc10-10.2.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc10 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python37-3.7.10: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 ===== Message from metis-5.1.0_8: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py37-hdbscan-0.8.27 depends on package: py37-numpy>=1.16,1 - found ===> Returning to build of py37-hdbscan-0.8.27 ===> py37-hdbscan-0.8.27 depends on executable: cython-3.7 - not found ===> Installing existing package /packages/All/py37-cython-0.29.21.txz [130releng-amd64-default-job-08] Installing py37-cython-0.29.21... [130releng-amd64-default-job-08] Extracting py37-cython-0.29.21: .......... done ===> py37-hdbscan-0.8.27 depends on executable: cython-3.7 - found ===> Returning to build of py37-hdbscan-0.8.27 ===> py37-hdbscan-0.8.27 depends on package: py37-setuptools>0 - found ===> py37-hdbscan-0.8.27 depends on file: /usr/local/bin/python3.7 - found =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for py37-hdbscan-0.8.27 running config =========================================================================== =======================<phase: build >============================ ===> Building for py37-hdbscan-0.8.27 running build running build_py creating build creating build/lib.freebsd-13.0-RC2-amd64-3.7 creating build/lib.freebsd-13.0-RC2-amd64-3.7/hdbscan copying hdbscan/plots.py -> build/lib.freebsd-13.0-RC2-amd64-3.7/hdbscan copying hdbscan/__init__.py -> build/lib.freebsd-13.0-RC2-amd64-3.7/hdbscan copying hdbscan/hdbscan_.py -> build/lib.freebsd-13.0-RC2-amd64-3.7/hdbscan copying hdbscan/prediction.py -> build/lib.freebsd-13.0-RC2-amd64-3.7/hdbscan copying hdbscan/flat.py -> build/lib.freebsd-13.0-RC2-amd64-3.7/hdbscan copying hdbscan/validity.py -> build/lib.freebsd-13.0-RC2-amd64-3.7/hdbscan copying hdbscan/robust_single_linkage_.py -> build/lib.freebsd-13.0-RC2-amd64-3.7/hdbscan creating build/lib.freebsd-13.0-RC2-amd64-3.7/hdbscan/tests copying hdbscan/tests/__init__.py -> build/lib.freebsd-13.0-RC2-amd64-3.7/hdbscan/tests copying hdbscan/tests/test_rsl.py -> build/lib.freebsd-13.0-RC2-amd64-3.7/hdbscan/tests copying hdbscan/tests/test_flat.py -> build/lib.freebsd-13.0-RC2-amd64-3.7/hdbscan/tests copying hdbscan/tests/test_hdbscan.py -> build/lib.freebsd-13.0-RC2-amd64-3.7/hdbscan/tests running build_ext skipping 'hdbscan/_hdbscan_tree.c' Cython extension (up-to-date) skipping 'hdbscan/_hdbscan_linkage.c' Cython extension (up-to-date) skipping 'hdbscan/_hdbscan_boruvka.c' Cython extension (up-to-date) skipping 'hdbscan/_hdbscan_reachability.c' Cython extension (up-to-date) skipping 'hdbscan/_prediction_utils.c' Cython extension (up-to-date) skipping 'hdbscan/dist_metrics.c' Cython extension (up-to-date) building 'hdbscan._hdbscan_tree' extension creating build/temp.freebsd-13.0-RC2-amd64-3.7 creating build/temp.freebsd-13.0-RC2-amd64-3.7/hdbscan cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -c hdbscan/_hdbscan_tree.c -o build/temp.freebsd-13.0-RC2-amd64-3.7/hdbscan/_hdbscan_tree.o In file included from hdbscan/_hdbscan_tree.c:610: In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. cc -shared -fstack-protector-strong -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-13.0-RC2-amd64-3.7/hdbscan/_hdbscan_tree.o -L/usr/local/lib -lpython3.7m -o build/lib.freebsd-13.0-RC2-amd64-3.7/hdbscan/_hdbscan_tree.so building 'hdbscan._hdbscan_linkage' extension cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -c hdbscan/_hdbscan_linkage.c -o build/temp.freebsd-13.0-RC2-amd64-3.7/hdbscan/_hdbscan_linkage.o In file included from hdbscan/_hdbscan_linkage.c:610: In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. cc -shared -fstack-protector-strong -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-13.0-RC2-amd64-3.7/hdbscan/_hdbscan_linkage.o -L/usr/local/lib -lpython3.7m -o build/lib.freebsd-13.0-RC2-amd64-3.7/hdbscan/_hdbscan_linkage.so building 'hdbscan._hdbscan_boruvka' extension cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -c hdbscan/_hdbscan_boruvka.c -o build/temp.freebsd-13.0-RC2-amd64-3.7/hdbscan/_hdbscan_boruvka.o In file included from hdbscan/_hdbscan_boruvka.c:610: In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ hdbscan/_hdbscan_boruvka.c:4548:13: warning: code will never be executed [-Wunreachable-code] __pyx_r = 0; ^ 2 warnings generated. cc -shared -fstack-protector-strong -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-13.0-RC2-amd64-3.7/hdbscan/_hdbscan_boruvka.o -L/usr/local/lib -lpython3.7m -o build/lib.freebsd-13.0-RC2-amd64-3.7/hdbscan/_hdbscan_boruvka.so building 'hdbscan._hdbscan_reachability' extension cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -c hdbscan/_hdbscan_reachability.c -o build/temp.freebsd-13.0-RC2-amd64-3.7/hdbscan/_hdbscan_reachability.o In file included from hdbscan/_hdbscan_reachability.c:610: In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. cc -shared -fstack-protector-strong -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-13.0-RC2-amd64-3.7/hdbscan/_hdbscan_reachability.o -L/usr/local/lib -lpython3.7m -o build/lib.freebsd-13.0-RC2-amd64-3.7/hdbscan/_hdbscan_reachability.so building 'hdbscan._prediction_utils' extension cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -c hdbscan/_prediction_utils.c -o build/temp.freebsd-13.0-RC2-amd64-3.7/hdbscan/_prediction_utils.o In file included from hdbscan/_prediction_utils.c:610: In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. cc -shared -fstack-protector-strong -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-13.0-RC2-amd64-3.7/hdbscan/_prediction_utils.o -L/usr/local/lib -lpython3.7m -o build/lib.freebsd-13.0-RC2-amd64-3.7/hdbscan/_prediction_utils.so building 'hdbscan.dist_metrics' extension cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.7m -I/usr/local/lib/python3.7/site-packages/numpy/core/include -c hdbscan/dist_metrics.c -o build/temp.freebsd-13.0-RC2-amd64-3.7/hdbscan/dist_metrics.o In file included from hdbscan/dist_metrics.c:610: In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ hdbscan/dist_metrics.c:7104:13: warning: code will never be executed [-Wunreachable-code] __pyx_r = 0; ^ hdbscan/dist_metrics.c:7139:74: warning: incompatible pointer types passing 'struct __pyx_obj_7hdbscan_12dist_metrics_DistanceMetric *' to parameter of type 'struct __pyx_obj_7hdbscan_12dist_metrics_SEuclideanDistance *' [-Wincompatible-pointer-types] __pyx_t_1 = __pyx_f_7hdbscan_12dist_metrics_18SEuclideanDistance_rdist(((struct __pyx_obj_7hdbscan_12dist_metrics_DistanceMetric *)__pyx_v_self), __pyx_v_x1, __pyx_v_x2, __pyx_v_size); if (unlikely(__pyx_t_1 == ((__pyx_t_7hdbscan_12dist_metrics_DTYPE_t)-1.0))) __PYX_ERR(1, 474, __pyx_L1_error) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hdbscan/dist_metrics.c:6936:168: note: passing argument to parameter '__pyx_v_self' here static __pyx_t_7hdbscan_12dist_metrics_DTYPE_t __pyx_f_7hdbscan_12dist_metrics_18SEuclideanDistance_rdist(struct __pyx_obj_7hdbscan_12dist_metrics_SEuclideanDistance *__pyx_v_self, __pyx_t_7hdbscan_12dist_metrics_DTYPE_t *__pyx_v_x1, __pyx_t_7hdbscan_12dist_metrics_DTYPE_t *__pyx_v_x2, __pyx_t_7hdbscan_12dist_metrics_ITYPE_t __pyx_v_size) { ^ hdbscan/dist_metrics.c:7915:73: warning: incompatible pointer types passing 'struct __pyx_obj_7hdbscan_12dist_metrics_DistanceMetric *' to parameter of type 'struct __pyx_obj_7hdbscan_12dist_metrics_MinkowskiDistance *' [-Wincompatible-pointer-types] __pyx_t_1 = __pyx_f_7hdbscan_12dist_metrics_17MinkowskiDistance_rdist(((struct __pyx_obj_7hdbscan_12dist_metrics_DistanceMetric *)__pyx_v_self), __pyx_v_x1, __pyx_v_x2, __pyx_v_size); if (unlikely(__pyx_t_1 == ((__pyx_t_7hdbscan_12dist_metrics_DTYPE_t)-1.0))) __PYX_ERR(1, 563, __pyx_L1_error) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hdbscan/dist_metrics.c:7831:166: note: passing argument to parameter '__pyx_v_self' here static __pyx_t_7hdbscan_12dist_metrics_DTYPE_t __pyx_f_7hdbscan_12dist_metrics_17MinkowskiDistance_rdist(struct __pyx_obj_7hdbscan_12dist_metrics_MinkowskiDistance *__pyx_v_self, __pyx_t_7hdbscan_12dist_metrics_DTYPE_t *__pyx_v_x1, __pyx_t_7hdbscan_12dist_metrics_DTYPE_t *__pyx_v_x2, __pyx_t_7hdbscan_12dist_metrics_ITYPE_t __pyx_v_size) { ^ hdbscan/dist_metrics.c:8578:13: warning: code will never be executed [-Wunreachable-code] __pyx_r = 0; ^ hdbscan/dist_metrics.c:8613:74: warning: incompatible pointer types passing 'struct __pyx_obj_7hdbscan_12dist_metrics_DistanceMetric *' to parameter of type 'struct __pyx_obj_7hdbscan_12dist_metrics_WMinkowskiDistance *' [-Wincompatible-pointer-types] __pyx_t_1 = __pyx_f_7hdbscan_12dist_metrics_18WMinkowskiDistance_rdist(((struct __pyx_obj_7hdbscan_12dist_metrics_DistanceMetric *)__pyx_v_self), __pyx_v_x1, __pyx_v_x2, __pyx_v_size); if (unlikely(__pyx_t_1 == ((__pyx_t_7hdbscan_12dist_metrics_DTYPE_t)-1.0))) __PYX_ERR(1, 622, __pyx_L1_error) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hdbscan/dist_metrics.c:8420:168: note: passing argument to parameter '__pyx_v_self' here static __pyx_t_7hdbscan_12dist_metrics_DTYPE_t __pyx_f_7hdbscan_12dist_metrics_18WMinkowskiDistance_rdist(struct __pyx_obj_7hdbscan_12dist_metrics_WMinkowskiDistance *__pyx_v_self, __pyx_t_7hdbscan_12dist_metrics_DTYPE_t *__pyx_v_x1, __pyx_t_7hdbscan_12dist_metrics_DTYPE_t *__pyx_v_x2, __pyx_t_7hdbscan_12dist_metrics_ITYPE_t __pyx_v_size) { ^ hdbscan/dist_metrics.c:9407:13: warning: code will never be executed [-Wunreachable-code] __pyx_r = 0; ^ hdbscan/dist_metrics.c:9442:75: warning: incompatible pointer types passing 'struct __pyx_obj_7hdbscan_12dist_metrics_DistanceMetric *' to parameter of type 'struct __pyx_obj_7hdbscan_12dist_metrics_MahalanobisDistance *' [-Wincompatible-pointer-types] __pyx_t_1 = __pyx_f_7hdbscan_12dist_metrics_19MahalanobisDistance_rdist(((struct __pyx_obj_7hdbscan_12dist_metrics_DistanceMetric *)__pyx_v_self), __pyx_v_x1, __pyx_v_x2, __pyx_v_size); if (unlikely(__pyx_t_1 == ((__pyx_t_7hdbscan_12dist_metrics_DTYPE_t)-1.0))) __PYX_ERR(1, 692, __pyx_L1_error) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hdbscan/dist_metrics.c:9191:170: note: passing argument to parameter '__pyx_v_self' here static __pyx_t_7hdbscan_12dist_metrics_DTYPE_t __pyx_f_7hdbscan_12dist_metrics_19MahalanobisDistance_rdist(struct __pyx_obj_7hdbscan_12dist_metrics_MahalanobisDistance *__pyx_v_self, __pyx_t_7hdbscan_12dist_metrics_DTYPE_t *__pyx_v_x1, __pyx_t_7hdbscan_12dist_metrics_DTYPE_t *__pyx_v_x2, __pyx_t_7hdbscan_12dist_metrics_ITYPE_t __pyx_v_size) { ^ hdbscan/dist_metrics.c:10983:13: warning: code will never be executed [-Wunreachable-code] __pyx_r = 0; ^ hdbscan/dist_metrics.c:11146:13: warning: code will never be executed [-Wunreachable-code] __pyx_r = 0; ^ 10 warnings generated. cc -shared -fstack-protector-strong -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-13.0-RC2-amd64-3.7/hdbscan/dist_metrics.o -L/usr/local/lib -lpython3.7m -o build/lib.freebsd-13.0-RC2-amd64-3.7/hdbscan/dist_metrics.so =========================================================================== =======================<phase: run-depends >============================ ===> py37-hdbscan-0.8.27 depends on package: py37-joblib>=1.0 - not found ===> Installing existing package /packages/All/py37-joblib-0.13.0.txz [130releng-amd64-default-job-08] Installing py37-joblib-0.13.0... [130releng-amd64-default-job-08] Extracting py37-joblib-0.13.0: .......... done ===> py37-hdbscan-0.8.27 depends on package: py37-joblib>=1.0 - not found *** Error code 1 Stop. make: stopped in /usr/ports/math/py-hdbscan
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