Date: Sun, 8 Jan 2012 03:47:21 GMT From: Eijiro Shibusawa <phd_kimberlite@yahoo.co.jp> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/163906: [UPDATE][PATCH] please update math/lapack to 3.4.0 Message-ID: <201201080347.q083lLah086070@red.freebsd.org> Resent-Message-ID: <201201080350.q083o854042836@freefall.freebsd.org>
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>Number: 163906
>Category: ports
>Synopsis: [UPDATE][PATCH] please update math/lapack to 3.4.0
>Confidential: no
>Severity: non-critical
>Priority: medium
>Responsible: freebsd-ports-bugs
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: change-request
>Submitter-Id: current-users
>Arrival-Date: Sun Jan 08 03:50:08 UTC 2012
>Closed-Date:
>Last-Modified:
>Originator: Eijiro Shibusawa
>Release: FreeBSD 9.0-RELEASE (amd64)
>Organization:
None
>Environment:
FreeBSD myhost.jp 9.0-RELEASE FreeBSD 9.0-RELEASE #0: Tue Jan 3 07:46:30 UTC 2012 root@farrell.cse.buffalo.edu:/usr/obj/usr/src/sys/GENERIC amd64
>Description:
Attached patch includes the following modifications.
* Updates to LAPACK 3.4.0 are added.
* ${MASTER_SITE_NETLIB}" with "MASTER_SITE_SUBDIR=lapack" is used, insted of MASTER_SITES.
* LICENSE is added to comply with BSD license.
* Routine csrot and zdrot are removed from "manpages" because they are BLAS routine.
* WITH_DOXYGEN knob is added to build manpages from lapack source code.
NOTE:
- This port was tested with porttools 0.99 and tinderbox 3.4.1 (9.0R and 8.2R-p5) on FreeBSD 9.0-RC3 on amd64.
- WITH_DOXYGEN knob is not set as default.
Although the knob enables us to build latest manpages,
it brings too much dependencies to the port.
Thus I am concerned that users are bothered by building them.
>How-To-Repeat:
>Fix:
Patch attached with submission follows:
diff -uNr /usr/ports/math/lapack/./Makefile ./Makefile
--- /usr/ports/math/lapack/./Makefile 2010-12-25 13:10:29.000000000 +0900
+++ ./Makefile 2011-12-18 16:54:00.000000000 +0900
@@ -6,28 +6,33 @@
#
PORTNAME= lapack
-PORTVERSION= 3.3.0
-PORTREVISION= 1
+PORTVERSION= 3.4.0
CATEGORIES= math
-MASTER_SITES= ftp://ftp.netlib.org/lapack/ \
- http://netlib.org/lapack/ \
- http://scicomp.ewha.ac.kr/netlib/lapack/ \
- http://service-spi.web.cern.ch/service-spi/external/tarFiles/
-DISTFILES= lapack-${PORTVERSION}.tgz manpages-3.2.0.tgz
+MASTER_SITES= NL
+MASTER_SITE_SUBDIR= lapack
+EXTRACT_SUFX= .tgz
DIST_SUBDIR= lapack
MAINTAINER= maho@FreeBSD.org
COMMENT= A library of Fortran 77 subroutines for linear algebra
+LICENSE= BSD
+LICENSE_FILE= ${WRKSRC}/LICENSE
+
LIB_DEPENDS= blas.2:${PORTSDIR}/math/blas
USE_FORTRAN= yes
USE_LDCONFIG= yes
-OPTIONS= PROFILE "Build and install profiling libraries" Off
+OPTIONS= PROFILE "Build and install profiling libraries" Off \
+ DOXYGEN "Install Doxygen to build manpages" Off
.include <bsd.port.pre.mk>
+.if defined(WITH_DOXYGEN)
+BUILD_DEPENDS+= doxygen:${PORTSDIR}/devel/doxygen
+.endif
+
.if ${ARCH} == "sparc64"
FPIC= -fPIC
.else
@@ -35,7 +40,6 @@
.endif
MAKE_JOBS_SAFE= yes
-MANSRC=${WRKDIR}/lapack-3.2.0
WRKSRC_SHARED=${WRKSRC}_shared
FFLAGS_SHARED=${FPIC}
.if defined(WITH_PROFILE)
@@ -57,11 +61,22 @@
RANLIB= ${LOCALBASE}/bin/ranlib
AR= ${LOCALBASE}/bin/ar
+.if !defined(WITH_DOXYGEN)
+DISTFILES+= ${DISTNAME}${EXTRACT_SUFX} manpages-3.2.0.tgz
+MANSRC= ${WRKDIR}/lapack-3.2.0/manpages/man/manl
+.include "${FILESDIR}/manpages"
+MANL= ${LAPACK_MAN}
+MANDIR= ${PREFIX}/man/manl
+.else
+.include "${FILESDIR}/manpages_doxygen"
+MANSRC= ${WRKSRC}/DOCS/man/man3
+MAN3= ${LAPACK_MAN}
+MANDIR= ${PREFIX}/man/man3
+.endif
+
pre-fetch:
@${ECHO} "You can override F77 and FFLAGS on the command line."
-.include "${FILESDIR}/manpages"
-
post-patch:
@${MV} ${WRKSRC}/INSTALL/make.inc.gfortran ${WRKSRC}/make.inc
${REINPLACE_CMD} -Ee \
@@ -98,6 +113,9 @@
@${ECHO_CMD} "Building profile lapack library"
${MAKE} -C ${WRKSRC_PROFILE} ${.MAKEFLAGS} ${_MAKE_JOBS} ARCH="${AR}"
.endif
+.if defined(WITH_DOXYGEN)
+ ${MAKE} -C ${WRKSRC} ${.MAKEFLAGS} ${_MAKE_JOBS} ARCH="${AR}" man
+.endif
post-build:
.for lib in lapack tmglib
@@ -115,10 +133,7 @@
${INSTALL_DATA} ${WRKSRC_PROFILE}/lib${lib}.a ${PREFIX}/lib/lib${lib}_p.a
.endif
.endfor
- ${INSTALL_MAN} ${MANSRC}/manpages/man/manl/[a-c]*.l ${PREFIX}/man/manl
- ${INSTALL_MAN} ${MANSRC}/manpages/man/manl/[d-l]*.l ${PREFIX}/man/manl
- ${INSTALL_MAN} ${MANSRC}/manpages/man/manl/[m-s]*.l ${PREFIX}/man/manl
- ${INSTALL_MAN} ${MANSRC}/manpages/man/manl/[t-z]*.l ${PREFIX}/man/manl
+ @(cd ${MANSRC} && ${INSTALL_MAN} ${LAPACK_MAN} ${MANDIR})
regression-test check test: build
@${ECHO_CMD} "Testing static lapack library"
diff -uNr /usr/ports/math/lapack/./distinfo ./distinfo
--- /usr/ports/math/lapack/./distinfo 2010-11-30 17:41:56.000000000 +0900
+++ ./distinfo 2011-12-18 16:54:00.000000000 +0900
@@ -1,4 +1,4 @@
-SHA256 (lapack/lapack-3.3.0.tgz) = bc531761287156e17476395c42664a15373723f54a6f80f192cda47771ec1225
-SIZE (lapack/lapack-3.3.0.tgz) = 6064824
+SHA256 (lapack/lapack-3.4.0.tgz) = a7139ef97004d0e3c4c30f1c52d508fd7ae84b5fbaf0dd8e792c167dc306c3e9
+SIZE (lapack/lapack-3.4.0.tgz) = 6127787
SHA256 (lapack/manpages-3.2.0.tgz) = cac234e597f2b9388bf3d3c0549b8a56bf3867c6c554d844bb839039973861f6
SIZE (lapack/manpages-3.2.0.tgz) = 1016997
diff -uNr /usr/ports/math/lapack/./files/manpages ./files/manpages
--- /usr/ports/math/lapack/./files/manpages 2009-04-13 16:34:56.000000000 +0900
+++ ./files/manpages 2011-12-18 16:54:00.000000000 +0900
@@ -1,4 +1,4 @@
-MANL= \
+LAPACK_MAN= \
cbdsqr.l \
cgbbrd.l \
cgbcon.l \
@@ -296,7 +296,6 @@
csptrf.l \
csptri.l \
csptrs.l \
-csrot.l \
csrscl.l \
cstedc.l \
cstegr.l \
@@ -1236,7 +1235,6 @@
zbdsqr.l \
zcgesv.l \
zcposv.l \
-zdrot.l \
zdrscl.l \
zgbbrd.l \
zgbcon.l \
diff -uNr /usr/ports/math/lapack/./files/manpages_doxygen ./files/manpages_doxygen
--- /usr/ports/math/lapack/./files/manpages_doxygen 1970-01-01 09:00:00.000000000 +0900
+++ ./files/manpages_doxygen 2011-12-18 16:54:00.000000000 +0900
@@ -0,0 +1,1694 @@
+LAPACK_MAN= \
+INSTALL_ilaver.f.3 \
+INSTALL_lsame.f.3 \
+LAPACK_version.f.3 \
+SRC_ilaver.f.3 \
+SRC_xerbla.f.3 \
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+zunmr2.f.3 \
+zunmr3.f.3 \
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diff -uNr /usr/ports/math/lapack/./files/patch-Makefile ./files/patch-Makefile
--- /usr/ports/math/lapack/./files/patch-Makefile 2009-04-13 16:34:56.000000000 +0900
+++ ./files/patch-Makefile 2011-12-18 16:54:00.000000000 +0900
@@ -1,11 +1,11 @@
---- Makefile~ 2008-11-08 02:20:55.000000000 +0900
-+++ Makefile 2009-04-13 13:05:23.000000000 +0900
+--- Makefile~ 2011-11-18 23:04:06.000000000 +0900
++++ Makefile 2011-11-18 23:04:27.000000000 +0900
@@ -6,7 +6,11 @@
include make.inc
+.if defined(ENABLE_TESTING) && ${ENABLE_TESTING} == "YES"
- all: lapack_install lib lapack_testing blas_testing
+ all: lapack_install lib blas_testing lapack_testing
+.else
+all: lapack_install lib
+.endif
diff -uNr /usr/ports/math/lapack/./files/patch-SRC+Makefile ./files/patch-SRC+Makefile
--- /usr/ports/math/lapack/./files/patch-SRC+Makefile 2010-12-25 13:10:29.000000000 +0900
+++ ./files/patch-SRC+Makefile 2011-12-18 16:54:00.000000000 +0900
@@ -1,51 +1,92 @@
---- SRC/Makefile.orig 2010-11-04 11:11:45.000000000 +0900
-+++ SRC/Makefile 2010-12-11 12:46:22.000000000 +0900
-@@ -123,7 +123,7 @@
- sormr3.o sormrq.o sormrz.o sormtr.o spbcon.o spbequ.o spbrfs.o \
- spbstf.o spbsv.o spbsvx.o \
- spbtf2.o spbtrf.o spbtrs.o spocon.o spoequ.o sporfs.o sposv.o \
-- sposvx.o spotf2.o spotrf.o spotri.o spstrf.o spstf2.o \
-+ sposvx.o spotf2.o spotri.o spstrf.o spstf2.o \
- sppcon.o sppequ.o \
- spprfs.o sppsv.o sppsvx.o spptrf.o spptri.o spptrs.o sptcon.o \
- spteqr.o sptrfs.o sptsv.o sptsvx.o spttrs.o sptts2.o srscl.o \
-@@ -164,7 +164,7 @@
- cgels.o cgelsd.o cgelss.o cgelsx.o cgelsy.o cgeql2.o cgeqlf.o cgeqp3.o \
- cgeqpf.o cgeqr2.o cgeqr2p.o cgeqrf.o cgeqrfp.o cgerfs.o \
- cgerq2.o cgerqf.o cgesc2.o cgesdd.o cgesv.o cgesvd.o \
-- cgesvx.o cgetc2.o cgetf2.o cgetrf.o cgetri.o cgetrs.o \
-+ cgesvx.o cgetc2.o cgetf2.o cgetri.o \
- cggbak.o cggbal.o cgges.o cggesx.o cggev.o cggevx.o cggglm.o \
- cgghrd.o cgglse.o cggqrf.o cggrqf.o \
- cggsvd.o cggsvp.o \
-@@ -194,7 +194,7 @@
- claswp.o clasyf.o clatbs.o clatdf.o clatps.o clatrd.o clatrs.o clatrz.o \
- clatzm.o clauu2.o clauum.o cpbcon.o cpbequ.o cpbrfs.o cpbstf.o cpbsv.o \
- cpbsvx.o cpbtf2.o cpbtrf.o cpbtrs.o cpocon.o cpoequ.o cporfs.o \
-- cposv.o cposvx.o cpotf2.o cpotrf.o cpotri.o cpotrs.o cpstrf.o cpstf2.o \
-+ cposv.o cposvx.o cpotf2.o cpotri.o cpstrf.o cpstf2.o \
- cppcon.o cppequ.o cpprfs.o cppsv.o cppsvx.o cpptrf.o cpptri.o cpptrs.o \
- cptcon.o cpteqr.o cptrfs.o cptsv.o cptsvx.o cpttrf.o cpttrs.o cptts2.o \
- crot.o cspcon.o cspmv.o cspr.o csprfs.o cspsv.o \
-@@ -371,9 +371,9 @@
+--- SRC/Makefile~ 2011-11-18 23:21:16.000000000 +0900
++++ SRC/Makefile 2011-11-18 23:22:26.000000000 +0900
+@@ -154,7 +154,7 @@
- all: ../$(LAPACKLIB)
+ DSLASRC = spotrs.o sgetrs.o spotrf.o sgetrf.o
+
+-ifdef USEXBLAS
++.ifdef USEXBLAS
+ SXLASRC = sgesvxx.o sgerfsx.o sla_gerfsx_extended.o sla_geamv.o \
+ sla_gercond.o sla_gerpvgrw.o ssysvxx.o ssyrfsx.o \
+ sla_syrfsx_extended.o sla_syamv.o sla_syrcond.o sla_syrpvgrw.o \
+@@ -162,7 +162,7 @@
+ sla_porpvgrw.o sgbsvxx.o sgbrfsx.o sla_gbrfsx_extended.o \
+ sla_gbamv.o sla_gbrcond.o sla_gbrpvgrw.o sla_lin_berr.o slarscl2.o \
+ slascl2.o sla_wwaddw.o
+-endif
++.endif
+
+ CLASRC = \
+ cbdsqr.o cgbbrd.o cgbcon.o cgbequ.o cgbrfs.o cgbsv.o cgbsvx.o \
+@@ -226,7 +226,7 @@
+ cgeqrt.o cgeqrt2.o cgeqrt3.o cgemqrt.o \
+ ctpqrt.o ctpqrt2.o ctpmqrt.o ctprfb.o
+
+-ifdef USEXBLAS
++.ifdef USEXBLAS
+ CXLASRC = cgesvxx.o cgerfsx.o cla_gerfsx_extended.o cla_geamv.o \
+ cla_gercond_c.o cla_gercond_x.o cla_gerpvgrw.o \
+ csysvxx.o csyrfsx.o cla_syrfsx_extended.o cla_syamv.o \
+@@ -238,7 +238,7 @@
+ chesvxx.o cherfsx.o cla_herfsx_extended.o cla_heamv.o \
+ cla_hercond_c.o cla_hercond_x.o cla_herpvgrw.o \
+ cla_lin_berr.o clarscl2.o clascl2.o cla_wwaddw.o
+-endif
++.endif
+
+ ZCLASRC = cpotrs.o cgetrs.o cpotrf.o cgetrf.o
+
+@@ -302,7 +302,7 @@
+ dgeqrt.o dgeqrt2.o dgeqrt3.o dgemqrt.o \
+ dtpqrt.o dtpqrt2.o dtpmqrt.o dtprfb.o
-ifdef USEXBLAS
+.ifdef USEXBLAS
- ALLXOBJ=$(SXLASRC) $(DXLASRC) $(CXLASRC) $(ZXLASRC) $(ALLXAUX)
+ DXLASRC = dgesvxx.o dgerfsx.o dla_gerfsx_extended.o dla_geamv.o \
+ dla_gercond.o dla_gerpvgrw.o dsysvxx.o dsyrfsx.o \
+ dla_syrfsx_extended.o dla_syamv.o dla_syrcond.o dla_syrpvgrw.o \
+@@ -310,7 +310,7 @@
+ dla_porpvgrw.o dgbsvxx.o dgbrfsx.o dla_gbrfsx_extended.o \
+ dla_gbamv.o dla_gbrcond.o dla_gbrpvgrw.o dla_lin_berr.o dlarscl2.o \
+ dlascl2.o dla_wwaddw.o
-endif
+.endif
- ALLOBJ=$(SLASRC) $(DLASRC) $(DSLASRC) $(CLASRC) $(ZLASRC) $(ZCLASRC) \
- $(SCLAUX) $(DZLAUX) $(ALLAUX)
-@@ -409,13 +409,13 @@
- $(CLASRC): $(FRC)
- $(DLASRC): $(FRC)
+ ZLASRC = \
+ zbdsqr.o zgbbrd.o zgbcon.o zgbequ.o zgbrfs.o zgbsv.o zgbsvx.o \
+@@ -379,7 +379,7 @@
+ zgeqrt.o zgeqrt2.o zgeqrt3.o zgemqrt.o \
+ ztpqrt.o ztpqrt2.o ztpmqrt.o ztprfb.o
+
+-ifdef USEXBLAS
++.ifdef USEXBLAS
+ ZXLASRC = zgesvxx.o zgerfsx.o zla_gerfsx_extended.o zla_geamv.o \
+ zla_gercond_c.o zla_gercond_x.o zla_gerpvgrw.o zsysvxx.o zsyrfsx.o \
+ zla_syrfsx_extended.o zla_syamv.o zla_syrcond_c.o zla_syrcond_x.o \
+@@ -389,14 +389,14 @@
+ zla_gbrpvgrw.o zhesvxx.o zherfsx.o zla_herfsx_extended.o \
+ zla_heamv.o zla_hercond_c.o zla_hercond_x.o zla_herpvgrw.o \
+ zla_lin_berr.o zlarscl2.o zlascl2.o zla_wwaddw.o
+-endif
++.endif
+
+ ALLOBJ = $(SLASRC) $(DLASRC) $(DSLASRC) $(CLASRC) $(ZLASRC) $(ZCLASRC) \
+ $(SCLAUX) $(DZLAUX) $(ALLAUX)
+
+-ifdef USEXBLAS
++.ifdef USEXBLAS
+ ALLXOBJ = $(SXLASRC) $(DXLASRC) $(CXLASRC) $(ZXLASRC)
+-endif
++.endif
+
+ all: ../$(LAPACKLIB)
+
+@@ -433,12 +433,12 @@
$(ZLASRC): $(FRC)
+ $(ZCLASRC): $(FRC)
+ $(DSLASRC): $(FRC)
-ifdef USEXBLAS
+.ifdef USEXBLAS
- $(ALLXAUX): $(FRC)
$(SXLASRC): $(FRC)
$(CXLASRC): $(FRC)
$(DXLASRC): $(FRC)
diff -uNr /usr/ports/math/lapack/./files/patch-TESTING+LIN+Makefile ./files/patch-TESTING+LIN+Makefile
--- /usr/ports/math/lapack/./files/patch-TESTING+LIN+Makefile 2010-08-30 16:31:34.000000000 +0900
+++ ./files/patch-TESTING+LIN+Makefile 2011-12-18 16:54:00.000000000 +0900
@@ -1,5 +1,5 @@
---- TESTING/LIN/Makefile.orig 2010-06-18 18:48:07.000000000 -0400
-+++ TESTING/LIN/Makefile 2010-08-29 10:55:41.000000000 -0400
+--- TESTING/LIN/Makefile~ 2011-11-01 07:21:11.000000000 +0900
++++ TESTING/LIN/Makefile 2011-11-18 23:32:05.000000000 +0900
@@ -34,11 +34,6 @@
#
#######################################################################
@@ -81,11 +81,11 @@
DSLINTST = dchkab.o \
ddrvab.o ddrvac.o derrab.o derrac.o dget08.o \
@@ -250,7 +245,7 @@
- ../../$(TMGLIB) ../../$(LAPACKLIB) $(XBLASLIB) $(BLASLIB) -o xlintstc && mv xlintstc $@
+ ../../$(TMGLIB) ../../$(LAPACKLIB) $(XBLASLIB) $(BLASLIB) -o $@
- ../xlintstd : $(ALINTST) $(DLINTST) $(DZLNTST)
+ xlintstd : $(ALINTST) $(DLINTST) $(DZLNTST) ../../$(LAPACKLIB)
- $(LOADER) $(LOADOPTS) $^ \
+ $(LOADER) $(LOADOPTS) $(ALINTST) $(DLINTST) $(DZLNTST) \
- ../../$(TMGLIB) ../../$(LAPACKLIB) $(XBLASLIB) $(BLASLIB) -o xlintstd && mv xlintstd $@
+ ../../$(TMGLIB) ../../$(LAPACKLIB) $(XBLASLIB) $(BLASLIB) -o $@
- ../xlintstz : $(ALINTST) $(ZLINTST) $(DZLNTST)
+ xlintstz : $(ALINTST) $(ZLINTST) $(DZLNTST) ../../$(LAPACKLIB)
diff -uNr /usr/ports/math/lapack/./files/patch-TESTING+Makefile ./files/patch-TESTING+Makefile
--- /usr/ports/math/lapack/./files/patch-TESTING+Makefile 2010-08-30 16:31:34.000000000 +0900
+++ ./files/patch-TESTING+Makefile 2011-12-18 16:54:00.000000000 +0900
@@ -1,5 +1,5 @@
---- TESTING/Makefile.orig 2010-08-29 10:57:23.000000000 -0400
-+++ TESTING/Makefile 2010-08-29 10:57:43.000000000 -0400
+--- TESTING/Makefile~ 2011-11-18 23:12:35.000000000 +0900
++++ TESTING/Makefile 2011-11-18 23:12:48.000000000 +0900
@@ -37,11 +37,6 @@
include ../make.inc
diff -uNr /usr/ports/math/lapack/./files/patch-make.inc.gfortran ./files/patch-make.inc.gfortran
--- /usr/ports/math/lapack/./files/patch-make.inc.gfortran 2010-08-30 16:31:34.000000000 +0900
+++ ./files/patch-make.inc.gfortran 2011-12-18 16:54:00.000000000 +0900
@@ -1,14 +1,6 @@
---- INSTALL/make.inc.gfortran.orig 2009-04-16 14:10:16.000000000 -0400
-+++ INSTALL/make.inc.gfortran 2010-08-29 10:41:02.000000000 -0400
-@@ -8,7 +8,6 @@
- #
- # The machine (platform) identifier to append to the library names
- #
--PLAT = _LINUX
- #
- # Modify the FORTRAN and OPTS definitions to refer to the
- # compiler and desired compiler options for your machine. NOOPT
-@@ -16,12 +15,12 @@
+--- INSTALL/make.inc.gfortran~ 2011-11-18 23:13:49.000000000 +0900
++++ INSTALL/make.inc.gfortran 2011-11-18 23:15:52.000000000 +0900
+@@ -12,12 +12,12 @@
# selected. Define LOADER and LOADOPTS to refer to the loader and
# desired load options for your machine.
#
@@ -26,7 +18,7 @@
#
# Timer for the SECOND and DSECND routines
#
-@@ -40,9 +39,8 @@
+@@ -36,9 +36,8 @@
# The archiver and the flag(s) to use when building archive (library)
# If you system has no ranlib, set RANLIB = echo.
#
@@ -37,15 +29,13 @@
#
# Location of the extended-precision BLAS (XBLAS) Fortran library
# used for building and testing extended-precision routines. The
-@@ -57,8 +55,8 @@
+@@ -53,6 +52,6 @@
# machine-specific, optimized BLAS library should be used whenever
# possible.)
#
--BLASLIB = ../../blas$(PLAT).a
--LAPACKLIB = lapack$(PLAT).a
--TMGLIB = tmglib$(PLAT).a
+-BLASLIB = ../../librefblas.a
+-LAPACKLIB = liblapack.a
+-TMGLIB = libtmglib.a
+BLASLIB = %%BLAS%%
+LAPACKLIB = liblapack$(PLAT).a
+TMGLIB = libtmglib$(PLAT).a
- EIGSRCLIB = eigsrc$(PLAT).a
- LINSRCLIB = linsrc$(PLAT).a
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