Date: Sun, 18 Apr 2021 15:53:52 GMT From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 48ddc73c5822 - main - biology/bowtie2: Add support for powerpc64le Message-ID: <202104181553.13IFrqSm013567@gitrepo.freebsd.org>
next in thread | raw e-mail | index | archive | help
The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=48ddc73c5822130dd3f00361ec6998eec0a29e6d commit 48ddc73c5822130dd3f00361ec6998eec0a29e6d Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2021-04-18 15:52:07 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2021-04-18 15:53:14 +0000 biology/bowtie2: Add support for powerpc64le PR: 255092 Submitted by: pkubaj --- biology/bowtie2/Makefile | 13 ++++++++++++- biology/bowtie2/distinfo | 4 +++- biology/bowtie2/files/patch-Makefile | 4 ++-- 3 files changed, 17 insertions(+), 4 deletions(-) diff --git a/biology/bowtie2/Makefile b/biology/bowtie2/Makefile index 198cf295e73e..2cd89b18642b 100644 --- a/biology/bowtie2/Makefile +++ b/biology/bowtie2/Makefile @@ -12,7 +12,7 @@ LICENSE_FILE= ${WRKSRC}/LICENSE # Requires a 64-bit processor and depends on hard-coded SSE instructions # Experimental support for AARCH64 as of 2.3.5 -ONLY_FOR_ARCHS= aarch64 amd64 +ONLY_FOR_ARCHS= aarch64 amd64 powerpc64le LIB_DEPENDS= libtbb.so:devel/onetbb RUN_DEPENDS= bash:shells/bash @@ -23,11 +23,22 @@ USE_GITHUB= yes SHEBANG_FILES= bowtie2 bowtie2-build bowtie2-inspect \ scripts/bowtie2-hbb.sh scripts/*.pl GH_ACCOUNT= BenLangmead +GH_TUPLE= nemequ:simde:422ed9c:simde OPTIONS_DEFINE= DOCS EXAMPLES SUB_FILES= bowtie2-test +.include <bsd.port.options.mk> + +.if ${ARCH} != amd64 +post-extract: + (cd ${WRKSRC_simde}; \ + ${COPYTREE_SHARE} . ${WRKSRC}/third_party/simde/) + +MAKE_ENV= POPCNT_CAPABILITY=0 +.endif + pre-configure: @${REINPLACE_CMD} \ -e 's|^RELEASE_FLAGS|# RELEASE_FLAGS|' \ diff --git a/biology/bowtie2/distinfo b/biology/bowtie2/distinfo index 100d7cba6fb8..57c4443eb8df 100644 --- a/biology/bowtie2/distinfo +++ b/biology/bowtie2/distinfo @@ -1,3 +1,5 @@ -TIMESTAMP = 1604617529 +TIMESTAMP = 1618499065 SHA256 (BenLangmead-bowtie2-v2.4.2_GH0.tar.gz) = ea33a1562faf759b21b3a905e20b87a3524ac4e53af8cd723d9a9f31ee159c8a SIZE (BenLangmead-bowtie2-v2.4.2_GH0.tar.gz) = 10590144 +SHA256 (nemequ-simde-422ed9c_GH0.tar.gz) = 3e7e962b499212cdddcaeca973d1c15d71a4b620afb46113d936ce5c3a8236ba +SIZE (nemequ-simde-422ed9c_GH0.tar.gz) = 332230 diff --git a/biology/bowtie2/files/patch-Makefile b/biology/bowtie2/files/patch-Makefile index 092870a96abf..f082b4abb0d3 100644 --- a/biology/bowtie2/files/patch-Makefile +++ b/biology/bowtie2/files/patch-Makefile @@ -1,4 +1,4 @@ ---- Makefile.orig 2020-11-05 23:04:50 UTC +--- Makefile.orig 2020-10-06 03:46:41 UTC +++ Makefile @@ -24,7 +24,7 @@ PREFIX := /usr/local @@ -33,7 +33,7 @@ CPPFLAGS += -Ithird_party/simde SANITIZER_FLAGS := -else ifeq (ppc64le,$(shell uname -m)) -+else ifeq (ppc64le,$(shell uname -p)) ++else ifeq (powerpc64le,$(shell uname -p)) BITS := 64 SSE_FLAG := CXXFLAGS += -fopenmp-simd
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?202104181553.13IFrqSm013567>