Date: Tue, 13 Aug 2002 21:17:38 -0700 (PDT) From: Nakata Maho <chat95@mbox.kyoto-inet.or.jp> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/41652: port update science/chemtool Message-ID: <200208140417.g7E4HcwS019217@www.freebsd.org>
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>Number: 41652 >Category: ports >Synopsis: port update science/chemtool >Confidential: no >Severity: serious >Priority: medium >Responsible: freebsd-ports >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Tue Aug 13 21:20:01 PDT 2002 >Closed-Date: >Last-Modified: >Originator: Nakata Maho >Release: 4.6-RELEASE >Organization: Private >Environment: FreeBSD debussy.private.org 4.6-STABLE FreeBSD 4.6-STABLE #0: Fri Jul 26 09:50:34 JST 2002 maho@debussy.private.org:/work/cvsup/src/sys/compile/MAHO-DEBUSSY-4.x-STABLE i386 >Description: I updated biology/chemtool. Recent version is availble at http://ruby.chemie.uni-freiburg.de/~martin/chemtool/, where chemtool are actively maintained. Former site http://www.uni-ulm.de/~s_tvolk/chemtool.html is not maintained. Please see revision history, massive enhancement, many many bug fixes are already done. >How-To-Repeat: >Fix: diff -urN /work/cvsup/ports/science/chemtool/Makefile chemtool/Makefile --- /work/cvsup/ports/science/chemtool/Makefile Tue Sep 11 16:46:02 2001 +++ chemtool/Makefile Wed Aug 14 13:06:16 2002 @@ -1,4 +1,3 @@ -# ex:ts=8 # New ports collection makefile for: chemtool # Date created: Mar 31, 2001 # Whom: Ying-Chieh Liao <ijliao@FreeBSD.org> @@ -6,16 +5,39 @@ # $FreeBSD: ports/science/chemtool/Makefile,v 1.2 2001/09/11 07:46:02 ijliao Exp $ PORTNAME= chemtool -PORTVERSION= 1.3.1 +PORTVERSION= 1.6 CATEGORIES= science -MASTER_SITES= http://www.uni-ulm.de/~s_tvolk/chemtool/src/ +MASTER_SITES= http://ruby.chemie.uni-freiburg.de/~martin/chemtool/ +DISTNAME= ct16a6 +EXTRACT_SUFX= .tgz MAINTAINER= ports@FreeBSD.org RUN_DEPENDS= transfig:${PORTSDIR}/print/transfig +WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION}alpha6 +USE_GMAKE= yes +USE_REINPLACE= yes USE_GTK= yes +CONFIGURE_ARGS= --disable-undo +USE_GMAKE= yes +MAN1= chemtool.1 cht.1 -MAN1= chemtool.1 +do-build: + @(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} ${GMAKE}) + +pre-patch: + @${REINPLACE_CMD} -e 's|gtk-config|${GTK_CONFIG}|g;' \ + ${WRKSRC}/configure + @${REINPLACE_CMD} -e 's|gtk-config|${GTK_CONFIG}|g; s|-lgtk|-lgtk12|g;' \ + ${WRKSRC}/Makefile.in + +do-install: + @(cd ${WRKSRC}; ${GMAKE} install) + @(cd ${WRKSRC}; \ + ${MKDIR} ${PREFIX}/share/examples/chemtool/; \ + cd ${WRKSRC}/examples/; \ + ${INSTALL_DATA} * ${PREFIX}/share/examples/chemtool; \ + ) .include <bsd.port.mk> diff -urN /work/cvsup/ports/science/chemtool/distinfo chemtool/distinfo --- /work/cvsup/ports/science/chemtool/distinfo Tue Sep 11 16:46:02 2001 +++ chemtool/distinfo Mon Jul 15 16:37:42 2002 @@ -1 +1 @@ -MD5 (chemtool-1.3.1.tar.gz) = 1b61a19a9757292b9b9a827b798f0320 +MD5 (ct16a6.tgz) = a3297b3f6512897a02e1b99f829b7ada diff -urN /work/cvsup/ports/science/chemtool/files/patch-Makefile chemtool/files/patch-Makefile --- /work/cvsup/ports/science/chemtool/files/patch-Makefile Fri Sep 21 23:18:28 2001 +++ chemtool/files/patch-Makefile Thu Jan 1 09:00:00 1970 @@ -1,39 +0,0 @@ -$FreeBSD: ports/science/chemtool/files/patch-Makefile,v 1.4 2001/09/21 14:18:28 sf Exp $ - ---- Makefile.orig Thu May 3 08:31:00 2001 -+++ Makefile Fri Sep 21 23:15:06 2001 -@@ -1,7 +1,5 @@ --PREFIX=/usr/local --LOCALEDIR=/usr/share/locale --CFLAGS=-O2 -Wall `gtk-config --cflags` # -DDISABLE_NLS --CC=gcc -+LOCALEDIR=${PREFIX}/share/locale -+CFLAGS+=`${GTK_CONFIG} --cflags` # -DDISABLE_NLS - CP=/bin/cp - RM=/bin/rm -f - -@@ -9,7 +7,7 @@ - OBJS = main.o chemproc.o graph.o draw.o inout.o - - --SYS_LIBRARIES = `gtk-config --libs` -lm -+SYS_LIBRARIES = `${GTK_CONFIG} --libs` -lm - - all: chemtool cht - -@@ -25,9 +23,12 @@ - # ${CC} ${CFLAGS} ${EXTRA_INCLUDES} -c ${SRCS} - - install: chemtool src-cht/cht -- ${CP} chemtool src-cht/cht ${PREFIX}/bin -- ${CP} chemtool.1 ${PREFIX}/man/man1 -- for L in `ls locales`; do ${CP} locales/$$L/chemtool.mo ${LOCALEDIR}/$$L/LC_MESSAGES;done -+ ${BSD_INSTALL_PROGRAM} chemtool src-cht/cht ${PREFIX}/bin -+ ${BSD_INSTALL_MAN} chemtool.1 ${PREFIX}/man/man1 -+ for L in `ls locales`; do \ -+ mkdir -p ${LOCALEDIR}/$$L/LC_MESSAGES; \ -+ ${BSD_INSTALL_DATA} locales/$$L/chemtool.mo ${LOCALEDIR}/$$L/LC_MESSAGES; \ -+ done - - clean: - ${RM} *.o *~ src-cht/*.o src-cht/*~ chemtool src-cht/cht diff -urN /work/cvsup/ports/science/chemtool/files/patch-aa chemtool/files/patch-aa --- /work/cvsup/ports/science/chemtool/files/patch-aa Thu Jan 1 09:00:00 1970 +++ chemtool/files/patch-aa Mon Jul 15 16:44:23 2002 @@ -0,0 +1,11 @@ +--- undo.c.orig~ Mon Jul 15 16:41:57 2002 ++++ undo.c Mon Jul 15 16:43:17 2002 +@@ -61,7 +61,7 @@ + #define MAP_NEW_ANON_AT_FLAGS(pos, size, flags) \ + (mmap((pos), (size), \ + PROT_READ | PROT_WRITE | PROT_EXEC, \ +- MAP_PRIVATE | MAP_ANONYMOUS | (flags), 0, 0)) ++ MAP_PRIVATE | MAP_ANON | (flags), 0, 0)) + #define MAP_NEW_ANON(size) MAP_NEW_ANON_AT_FLAGS(0, (size), 0) + #define MAP_NEW_ANON_AT(pos, size) \ + MAP_NEW_ANON_AT_FLAGS((pos), (size), MAP_FIXED) diff -urN /work/cvsup/ports/science/chemtool/files/patch-ab chemtool/files/patch-ab --- /work/cvsup/ports/science/chemtool/files/patch-ab Thu Jan 1 09:00:00 1970 +++ chemtool/files/patch-ab Wed Aug 14 12:37:29 2002 @@ -0,0 +1,11 @@ +--- Makefile.in~ Wed Aug 14 12:36:43 2002 ++++ Makefile.in Wed Aug 14 12:37:10 2002 +@@ -5,7 +5,7 @@ + mandir=@mandir@ + kdedir=@kdemimedir@ + gnomedir=@gnomemimedir@ +-CFLAGS=-O2 -Wall -Wunused -Wuninitialized -I. `/usr/X11R6/bin/gtk12-config --cflags` @DEFS@ -DLOCALEDIR=\"${localedir}\" ++CFLAGS+= -Wall -Wunused -Wuninitialized -I. `/usr/X11R6/bin/gtk12-config --cflags` @DEFS@ -DLOCALEDIR=\"${localedir}\" + + CC=@CC@ + CP=/bin/cp diff -urN /work/cvsup/ports/science/chemtool/files/patch-src-cht::Makefile chemtool/files/patch-src-cht::Makefile --- /work/cvsup/ports/science/chemtool/files/patch-src-cht::Makefile Tue Sep 11 16:46:02 2001 +++ chemtool/files/patch-src-cht::Makefile Thu Jan 1 09:00:00 1970 @@ -1,8 +0,0 @@ ---- src-cht/Makefile.orig Wed Feb 7 03:38:54 2001 -+++ src-cht/Makefile Sat Apr 14 02:13:38 2001 -@@ -1,4 +1,4 @@ - default: cht - - cht: cht-1.7.c -- gcc -O cht-1.7.c -lm -o cht -+ ${CC} ${CFLAGS} cht-1.7.c -lm -o cht diff -urN /work/cvsup/ports/science/chemtool/pkg-descr chemtool/pkg-descr --- /work/cvsup/ports/science/chemtool/pkg-descr Sat Mar 31 04:22:59 2001 +++ chemtool/pkg-descr Sat Jul 6 01:46:39 2002 @@ -1,4 +1,4 @@ Chemtool is a program for drawing organic molecules easily and store them as a X bitmap file. -WWW: http://www.uni-ulm.de/~s_tvolk/chemtool.html +WWW: http://ruby.chemie.uni-freiburg.de/~martin/chemtool/ diff -urN /work/cvsup/ports/science/chemtool/pkg-plist chemtool/pkg-plist --- /work/cvsup/ports/science/chemtool/pkg-plist Tue Sep 11 16:46:02 2001 +++ chemtool/pkg-plist Wed Aug 14 13:06:04 2002 @@ -1,5 +1,39 @@ bin/chemtool bin/cht +share/examples/chemtool/14263232.mol +share/examples/chemtool/AMP.cht +share/examples/chemtool/Adenosine.cht +share/examples/chemtool/Dehydrotubifolin.cht +share/examples/chemtool/G-host.pdb +share/examples/chemtool/Indolizomycin.cht +share/examples/chemtool/Lepicidin-A-Aglycon.cht +share/examples/chemtool/Neu2 +share/examples/chemtool/amine.mol +share/examples/chemtool/bcarotin.pdb +share/examples/chemtool/breve.cht +share/examples/chemtool/breve.mol +share/examples/chemtool/byrostatin1.cht +share/examples/chemtool/c70.cht +share/examples/chemtool/camphor +share/examples/chemtool/claisen.cht +share/examples/chemtool/dodecahedran.cht +share/examples/chemtool/example1 +share/examples/chemtool/example2 +share/examples/chemtool/example3 +share/examples/chemtool/example4 +share/examples/chemtool/example5 +share/examples/chemtool/example7 +share/examples/chemtool/indigo +share/examples/chemtool/kdo +share/examples/chemtool/krebs.cht +share/examples/chemtool/pagodan.cht +share/examples/chemtool/penicillin_v.cht +share/examples/chemtool/pteridin +share/examples/chemtool/reaction.cht +share/examples/chemtool/rutamycin_b.cht +share/examples/chemtool/tcdd.cht +share/examples/chemtool/viagra.cht share/locale/cs/LC_MESSAGES/chemtool.mo share/locale/de/LC_MESSAGES/chemtool.mo share/locale/ru/LC_MESSAGES/chemtool.mo +@dirrm share/examples/chemtool >Release-Note: >Audit-Trail: >Unformatted: To Unsubscribe: send mail to majordomo@FreeBSD.org with "unsubscribe freebsd-ports" in the body of the message
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