Date: Tue, 30 Jan 2018 01:46:25 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 111mips-quarterly][biology/migrate] Failed for migrate-3.6.11 in build Message-ID: <201801300146.w0U1kPZb039991@beefy14.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Last committer: amdmi3@FreeBSD.org Ident: $FreeBSD: branches/2018Q1/biology/migrate/Makefile 413499 2016-04-17 10:15:59Z amdmi3 $ Log URL: http://beefy14.nyi.freebsd.org/data/111mips-quarterly/460364/logs/migrate-3.6.11.log Build URL: http://beefy14.nyi.freebsd.org/build.html?mastername=111mips-quarterly&build=460364 Log: =>> Building biology/migrate build started at Tue Jan 30 01:46:01 UTC 2018 port directory: /usr/ports/biology/migrate package name: migrate-3.6.11 building for: FreeBSD 111mips-quarterly-job-07 11.1-RELEASE-p6 FreeBSD 11.1-RELEASE-p6 1101001 mips maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: branches/2018Q1/biology/migrate/Makefile 413499 2016-04-17 10:15:59Z amdmi3 $ Poudriere version: 3.2.4-22-g5aece630 Host OSVERSION: 1200054 Jail OSVERSION: 1101001 Job Id: 07 ---Begin Environment--- POUDRIEREPATH=/usr/local/bin/poudriere PACKAGE_BUILDING=yes LOCALBASE=/usr/local LIBEXECPREFIX=/usr/local/libexec/poudriere SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIERE_VERSION=3.2.4-22-g5aece630 P_PYTHON_MAJOR_VER=2 HOME=/root USER=root SCRIPTPREFIX=/usr/local/share/poudriere MASTERNAME=111mips-quarterly PWD=/usr/local/poudriere/data/.m/111mips-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS OLDPWD=/usr/local/poudriere/data/.m/111mips-quarterly/ref/.p POUDRIERE_BUILD_TYPE=bulk PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin QEMU_EMULATING=1 MASTERMNT=/usr/local/poudriere/data/.m/111mips-quarterly/ref SAVED_TERM= STATUS=1 MAIL=/var/mail/root BLOCKSIZE=K UNAME_r=11.1-RELEASE-p6 UNAME_v=FreeBSD 11.1-RELEASE-p6 1101001 OSVERSION=1101001 ABI_FILE=/usr/lib/crt1.o UNAME_m=mips UNAME_p=mips SHELL=/bin/csh ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for migrate-3.6.11: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples THREAD=off: Build with THREAD support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- ports@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_prog_GMAKE="/nxb-bin/usr/bin/make" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/migrate/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/migrate/work HOME=/wrkdirs/usr/ports/biology/migrate/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/migrate/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/migrate/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/migrate/work HOME=/wrkdirs/usr/ports/biology/migrate/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/migrate/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=11.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/migrate" EXAMPLESDIR="share/examples/migrate" DATADIR="share/migrate" WWWDIR="www/migrate" ETCDIR="etc/migrate" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/migrate DOCSDIR=/usr/local/share/doc/migrate EXAMPLESDIR=/usr/local/share/examples/migrate WWWDIR=/usr/local/www/migrate ETCDIR=/usr/local/etc/migrate --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=mips MACHINE_ARCH=mips ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=mips CONFIGURE_MAX_CMD_LEN=262144 OPSYS=FreeBSD OSREL=11.1 OSVERSION=1101001 PYTHONBASE=/usr/local UID=0 _OSRELEASE=11.1-RELEASE-p6 #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 131072 stack size (kbytes, -s) 8192 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> NOTICE: The migrate port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port =========================================================================== =======================<phase: pkg-depends >============================ ===> migrate-3.6.11 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.3_1.txz [111mips-quarterly-job-07] Installing pkg-1.10.3_1... [111mips-quarterly-job-07] Extracting pkg-1.10.3_1: .......... done ===> migrate-3.6.11 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of migrate-3.6.11 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> NOTICE: The migrate port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by migrate-3.6.11 for building =========================================================================== =======================<phase: checksum >============================ ===> NOTICE: The migrate port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by migrate-3.6.11 for building => SHA256 Checksum OK for migrate-3.6.11.src.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> NOTICE: The migrate port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by migrate-3.6.11 for building ===> Extracting for migrate-3.6.11 => SHA256 Checksum OK for migrate-3.6.11.src.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for migrate-3.6.11 ===> Applying FreeBSD patches for migrate-3.6.11 =========================================================================== =======================<phase: build-depends >============================ =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for migrate-3.6.11 configure: loading site script /usr/ports/Templates/config.site checking build system type... mips-portbld-freebsd11.1 checking host system type... mips-portbld-freebsd11.1 checking target system type... mips-portbld-freebsd11.1 ./configure: USERFLAGS+=-O2: not found checking for gmake... (cached) /nxb-bin/usr/bin/make ======================================================================= Migrate subversion: Hardware: portbld System OS: freebsd11.1 FreeBSD System CPU: mips ----------------------------------------------------------------------- checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /nxb-bin/usr/bin/cc accepts -g... yes checking for /nxb-bin/usr/bin/cc option to accept ISO C89... none needed checking whether we are using the GNU C++ compiler... yes checking whether /nxb-bin/usr/bin/c++ accepts -g... yes ./configure: CFLAGS+=: not found C-compiler: /nxb-bin/usr/bin/cc C++-compiler:/nxb-bin/usr/bin/c++ CFLAGS: -O2 -pipe -G0 -fno-strict-aliasing ======================================================================= checking for a BSD-compatible install... /usr/bin/install -c checking for pthread_create in -lpthread... yes checking for MPI_Init in -lmpi... no checking for exp in -lm... yes checking how to run the C preprocessor... /nxb-bin/usr/bin/cpp checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for limits.h... (cached) yes checking for strings.h... (cached) yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for an ANSI C-conforming const... yes checking for size_t... (cached) yes checking for int... (cached) yes checking whether struct tm is in sys/time.h or time.h... time.h checking for inline... inline checking return type of signal handlers... void checking for strftime... (cached) yes checking for strcspn... (cached) yes checking for strsep... (cached) yes checking for lgamma... yes checking which zlib implementation to use... autodetect checking for main in -lz... yes checking for gzbuffer... no configure: creating ./config.status config.status: creating Makefile config.status: creating conf.h config.status: conf.h is unchanged MIGRATE-N is now setup to compile the program you need to type one of the commands below (ordered by preference): SINGLE CPU machines make # with PDF output support # this might fail on first attempt, # if the make fails, please let me know # often linking fails because the C++ pdf library # and the core migrate parts (C) mismatch # check the Makefile line for STDLIB= -lstdc++ SMP machines more than 1 CPU in machine make thread # uses the thread library if present make # on macs running macos 10.6+ using GrandCentral PARALLEL Computers, Clusters with MPI software make mpis # each cpu-core can be treated as a node make mpis-thread # experimental, may increase load per node! ------------------------------------------------------------------------ SPEED and other TESTING the migrate website contains a testsuite.tar.gz that has many tests for single, parallel and thread compilations the tests are driven by a python script rt (see the README in the testsuite) and a submit script that allows to streamline submissions to a batch queue system, currently supported systems are SUN/ORACLE GRIDENGINE, TORQUE/MOAB, and NONE ------------------------------------------------------------------------ In case there are problems with the compile send a message to the migrate-support@google.com usergroup, include a log of ./configure make ======================================================================= =========================================================================== =======================<phase: build >============================ ===> Building for migrate-3.6.11 (cd ./haru ; /nxb-bin/usr/bin/make -f makefile. "CC=/nxb-bin/usr/bin/c++" "CPP=/nxb-bin/usr/bin/cc" "ARCH=mips" "MACOSVERSION=" "MYCPPFLAGS=-O2 -pipe -G0 -fno-strict-aliasing -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++ ") make[2]: cannot open makefile.. make[2]: stopped in /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.11/src/haru *** Error code 2 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/migrate/work/migrate-3.6.11/src *** Error code 1 Stop. make: stopped in /usr/ports/biology/migrate
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