From owner-dev-commits-ports-all@freebsd.org Tue Apr 20 04:22:07 2021 Return-Path: Delivered-To: dev-commits-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 318435E35CC; Tue, 20 Apr 2021 04:22:07 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4FPVrZ6zY9z3kgc; Tue, 20 Apr 2021 04:22:06 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id A02FC42C3; Tue, 20 Apr 2021 04:22:06 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 13K4M6lc027732; Tue, 20 Apr 2021 04:22:06 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 13K4M6Av027731; Tue, 20 Apr 2021 04:22:06 GMT (envelope-from git) Date: Tue, 20 Apr 2021 04:22:06 GMT Message-Id: <202104200422.13K4M6Av027731@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: b9f16eadc90f - main - New port: biology/py-resdk: Resolwe SDK to interact with Resolwe server and Resolwe Bioinformatics MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: b9f16eadc90f774bff9030ef7b8511ba1a392464 Auto-Submitted: auto-generated X-BeenThere: dev-commits-ports-all@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: Commit messages for all branches of the ports repository List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 20 Apr 2021 04:22:07 -0000 The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=b9f16eadc90f774bff9030ef7b8511ba1a392464 commit b9f16eadc90f774bff9030ef7b8511ba1a392464 Author: Yuri Victorovich AuthorDate: 2021-04-20 04:20:35 +0000 Commit: Yuri Victorovich CommitDate: 2021-04-20 04:22:01 +0000 New port: biology/py-resdk: Resolwe SDK to interact with Resolwe server and Resolwe Bioinformatics --- biology/Makefile | 1 + biology/py-resdk/Makefile | 28 ++++++++++++++++++++++++++++ biology/py-resdk/distinfo | 3 +++ biology/py-resdk/pkg-descr | 6 ++++++ 4 files changed, 38 insertions(+) diff --git a/biology/Makefile b/biology/Makefile index 7c6bfbddf1d1..53c31ac00b77 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -143,6 +143,7 @@ SUBDIR += py-pandas-charm SUBDIR += py-pyfaidx SUBDIR += py-pysam + SUBDIR += py-resdk SUBDIR += py-scikit-bio SUBDIR += py-xenaPython SUBDIR += pyfasta diff --git a/biology/py-resdk/Makefile b/biology/py-resdk/Makefile new file mode 100644 index 000000000000..39fbbeb35e01 --- /dev/null +++ b/biology/py-resdk/Makefile @@ -0,0 +1,28 @@ +PORTNAME= resdk +DISTVERSION= 13.1.0 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Resolwe SDK to interact with Resolwe server and Resolwe Bioinformatics + +LICENSE= BSD3CLAUSE + +RUN_DEPENDS= \ + ${PYTHON_PKGNAMEPREFIX}openpyxl>0:textproc/py-openpyxl@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pandas>=1.0.0:math/py-pandas@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pytz>=2018.4:devel/py-pytz@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}requests>=2.6.0:www/py-requests@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}slumber>=0.7.1:www/py-slumber@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}tzlocal>=1.5.1:devel/py-tzlocal@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}wrapt>0:devel/py-wrapt@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}xlrd>0:textproc/py-xlrd@${PY_FLAVOR} + +USES= python:3.6+ +USE_PYTHON= distutils autoplist + +NO_ARCH= yes + +.include diff --git a/biology/py-resdk/distinfo b/biology/py-resdk/distinfo new file mode 100644 index 000000000000..445f5f70e9d3 --- /dev/null +++ b/biology/py-resdk/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1618889698 +SHA256 (resdk-13.1.0.tar.gz) = b1348484e93f93184574dab3677816b5a0e76ccbb25aab0fc1cf1728142ae7ce +SIZE (resdk-13.1.0.tar.gz) = 219876 diff --git a/biology/py-resdk/pkg-descr b/biology/py-resdk/pkg-descr new file mode 100644 index 000000000000..d256f8eb4962 --- /dev/null +++ b/biology/py-resdk/pkg-descr @@ -0,0 +1,6 @@ +Resolwe SDK for Python supports interaction with Resolwe server and its +extension Resolwe Bioinformatics. You can use it to upload and inspect +biomedical data sets, contribute annotations, run analysis, and write +pipelines. + +WWW: https://github.com/genialis/resolwe-bio-py