From owner-freebsd-ports Fri May 11 9:40:20 2001 Delivered-To: freebsd-ports@hub.freebsd.org Received: from freefall.freebsd.org (freefall.freebsd.org [216.136.204.21]) by hub.freebsd.org (Postfix) with ESMTP id 0B43137B43E for ; Fri, 11 May 2001 09:40:02 -0700 (PDT) (envelope-from gnats@FreeBSD.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.11.1/8.11.1) id f4BGe1q21243; Fri, 11 May 2001 09:40:01 -0700 (PDT) (envelope-from gnats) Received: from histidine.utmb.edu (histidine.utmb.edu [129.109.59.80]) by hub.freebsd.org (Postfix) with ESMTP id 19AC437B423 for ; Fri, 11 May 2001 09:32:45 -0700 (PDT) (envelope-from bdodson@scms.utmb.EDU) Received: (from bdodson@localhost) by histidine.utmb.edu (8.11.3/8.11.1) id f4BGWt754529; Fri, 11 May 2001 11:32:55 -0500 (CDT) (envelope-from bdodson) Message-Id: <200105111632.f4BGWt754529@histidine.utmb.edu> Date: Fri, 11 May 2001 11:32:55 -0500 (CDT) From: bdodson@siegfried.utmb.edu Reply-To: bdodson@siegfried.utmb.edu To: FreeBSD-gnats-submit@freebsd.org X-Send-Pr-Version: 3.113 Subject: ports/27273: Update port by maintainer: biology/nab Sender: owner-freebsd-ports@FreeBSD.ORG Precedence: bulk X-Loop: FreeBSD.org >Number: 27273 >Category: ports >Synopsis: Update port by maintainer: biology/nab >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Fri May 11 09:40:01 PDT 2001 >Closed-Date: >Last-Modified: >Originator: M. L. Dodson >Release: FreeBSD 4.3-RELEASE i386 >Organization: University of Texas Medical Branch >Environment: System: FreeBSD histidine.utmb.edu 4.3-RELEASE FreeBSD 4.3-RELEASE #0: Mon Apr 30 16:46:47 CDT 2001 bdodson@valine.utmb.edu:/usr/obj/usr/src/sys/HISTIDINE i386 >Description: Please delete the following in the files directory: patch-ad patch-ae patch-af patch-ag patch-ah patch-ai In addition, the following should be added as patch-ab: *** examples/program_7.nab.orig Thu Jan 14 16:53:07 1999 --- examples/program_7.nab Thu Jan 14 16:53:24 1999 *************** *** 9,15 **** cseq = wc_complement( "acgtacgt", "dna.amber94.rlb", "dna" ); m = wc_helix( seq, "dna.amber94.rlb", "dna", cseq, "dna.amber94.rlb", ! "dna", 2.25, -4.96, 36.0, 4.38, "" ); b = newbounds(m, ""); allocate xyz[ 4*m.natoms ]; --- 9,15 ---- cseq = wc_complement( "acgtacgt", "dna.amber94.rlb", "dna" ); m = wc_helix( seq, "dna.amber94.rlb", "dna", cseq, "dna.amber94.rlb", ! "dna", 2.25, -4.96, 36.0, 3.38, "" ); b = newbounds(m, ""); allocate xyz[ 4*m.natoms ]; >How-To-Repeat: >Fix: begin 644 nab.diff.gz M'XL("/G4^CH``VYA8BYD:69F`,P[;7/:2-*?X5?,.:X[.R"!P!A#UGLAF"2^ MC7$*>S?9JZVBA#2`-B#ID41B;Q[_]^N>T;MF)/#M5ITK<23UR_3;=/>T%--: M+HGB[:;$UA>JXUFKUHW^A2ZM#<4G\4U=490B2NW&L\H&;D>T?I$ZPP[^`9^\?ETG+\B4 M?B.NXP4^,9S-AAJ!!0O%@BT=;XCA7_,(8E^[J@;J$1K-T-I M9'@@D;4!F9I<%ECYT]K9)O#HYT8E'U1RY9@^R/'#PF07KWUCZZN[8+M0J;G[ M$:4Y?NM1^N;N:LBE;RTL9^.L'EMI4S2_$DW5F&`M#?^0=B]T328/+CE& MB6->QW52)Q]O9_?3TU,[=0;N2==>$;&H_O)N]O9 M]>3NLA:*4B!.VRUX+?J&Y[ENC[JTG)WBY:A^[2%2]^, MKJ?W\'2*:T;JC3?7TQ&WZQ8BZB'P=-P%^`/WV]TF"9V`?J"Z MF[KW_?E6MVQ0I5%#ZA6U$RAJFOX!QK8/\;Y-4=NP7DR]I=Z*IJ@[1IH:L"W; M"J+[G>&ZH&'CP_6;62B^82U=W?.IJG.4C;5`Q?6(!.[]QZVJ(]GU=`P4)EW" M-MJHZV31^#J\-QR3IN'!HTM]=8W&=1T_4$*##<&9KX^_CS\^D>/O;Z\_3.X@ M>)Z2!!1[J!Q/-1TCP6W!79*VB(C0<.REM0(!DP4@S%V/*I;M!_IF,P3COC;, M%%/?,\C?_\ZM?OS];G(/`2:(XN/O&'U/9$'!9Q3-%')$\YE.PA_D4K9?3,LC M"FSW8KBC`*4(&+352)9M;'8FK48$-]>):BW)W\"]EDW-D^/OTUO,*5>WX[NG M4_1`VB!HC)-`]X@!Y8/0!WWK;J@/P>X'Y/^9F?9&=R%76R8E_LZ%X*",G-1J M)XR^(.DK@FP>@,WI:;D5,0[0DJ2631&Y4($W5PQ[MW(:WF?E&X*9IQ6I',??9S=`LX2Z['BFCXH=?_^`B_I$55O3JS,OP%$<@*C;KZ M([7"5K?QKU9OJ)!(R))`O3C^'A6=ISB^A&FA8%W^!PUW_'WY1%3@"C$-C+/L MXZI0QA^#5LP?+57*'\M'&>O0'1+VD0/S2Y"PIL2I59%5F#5D5]&6#+F&G0*G\0/HQF1`%`X9RD_O;J![&;V;0"&M*YATAS6L28JXR&VA>++4C+95(Z_\L/!-%;M: M=?OEQ[I9/#>8EA]8]M)A?7]TDSTW1$^KSPTQ9N[DM^BWNX8Q,(V>=M8[&U!]T#?Z/6VIGU\L.]T!-(L) M83=#VNWI_?;YPM0Z9WI'ZQC&15=K&[K6[?07M-/IBRR`'8>?/3]E'V6MD84) M;-+-VB2'_XF:Y(H:I*L1[6+8;L,?H@W.!^&)ZIPTVLTVLT[YN23+5GHZZ:9. 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MN[BBK>%T!RZZ34/\:Y%,)X-`4TS)2VR3]U"X)NRUZ$9^1/DV^IQ`;Q6CC7B+ MH,1SA.DTPT;^PAYP7+!2D4!-?T,2#?<5B(R2:==*)99CFXZ(L:U,P6`5D)*K M(62V.*3O$?V?P.Z2"V)HNB^H=JZ\ M4>1ZTFU9KF>YTLW0XGNV33$%BR]?,=ETO6D>N[B)G>*J1ZTM[>XP>MRKSLK5 MKD/1N>O8IGJ\-GTJQS#F$[!T_E1E@`` ` end >Release-Note: >Audit-Trail: >Unformatted: To Unsubscribe: send mail to majordomo@FreeBSD.org with "unsubscribe freebsd-ports" in the body of the message