Date: Fri, 1 Nov 2013 08:12:08 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [REL - head-i386-default][science/jmol] Failed for jmol-12.2.23 in build Message-ID: <201311010812.rA18C8er001893@beefy1.isc.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Last committer: bapt@FreeBSD.org Ident: $FreeBSD: head/science/jmol/Makefile 327767 2013-09-20 22:48:30Z bapt $ Log URL: http://beefy1.isc.freebsd.org/bulk/head-i386-default/2013-10-31_19h34m41s/logs/jmol-12.2.23.log Build URL: http://beefy1.isc.freebsd.org/bulk/head-i386-default/2013-10-31_19h34m41s Log: ====>> Building science/jmol build started at Fri Nov 1 08:10:49 UTC 2013 port directory: /usr/ports/science/jmol building for: FreeBSD head-i386-default-job-21 11.0-CURRENT FreeBSD 11.0-CURRENT r256430 i386 maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: head/science/jmol/Makefile 327767 2013-09-20 22:48:30Z bapt $ Poudriere version: 3.1-pre ---Begin Environment--- UNAME_m=i386 UNAME_p=i386 OSVERSION=1100000 UNAME_v=FreeBSD 11.0-CURRENT r256430 UNAME_r=11.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin STATUS=1 MASTERMNT=/usr/local/poudriere/data/build/head-i386-default/ref PKG_EXT=txz tpid=33417 POUDRIERE_BUILD_TYPE=bulk PKGNG=1 PKGNAME=jmol-12.2.23 PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f PKG_ADD=/usr/local/sbin/pkg-static add PWD=/root MASTERNAME=head-i386-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=/poudriere/pkg-static version PKG_BIN=/usr/local/sbin/pkg-static ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- TMPDIR="/tmp" TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- TMPDIR="/tmp" JAVA_HOME=/usr/local/openjdk6 TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --SUB_LIST-- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="1.6+" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/jmol DOCSDIR=/usr/local/share/doc/jmol EXAMPLESDIR=/usr/local/share/examples/jmol WWWDIR=/usr/local/www/jmol ETCDIR=/usr/local/etc/jmol --End SUB_LIST-- ---Begin make.conf--- ARCH=i386 MACHINE=i386 MACHINE_ARCH=i386 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ===> Cleaning for jmol-12.2.23 =======================<phase: check-config >============================ =========================================================================== =======================<phase: pkg-depends >============================ ===> jmol-12.2.23 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.1.4_8.txz Installing pkg-1.1.4_8... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of jmol-12.2.23 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ You may use the following build options: WITHOUT_COMPILE=yes Install the pre-compiled .jar file ===> Fetching all distfiles required by jmol-12.2.23 for building =========================================================================== =======================<phase: checksum >============================ You may use the following build options: WITHOUT_COMPILE=yes Install the pre-compiled .jar file ===> Fetching all distfiles required by jmol-12.2.23 for building => SHA256 Checksum OK for Jmol-12.2.23-full.tar.gz. => SHA256 Checksum OK for selfSignedCertificate.cer. => SHA256 Checksum OK for selfSignedCertificate.store. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ You may use the following build options: WITHOUT_COMPILE=yes Install the pre-compiled .jar file ===> Fetching all distfiles required by jmol-12.2.23 for building ===> Extracting for jmol-12.2.23 => SHA256 Checksum OK for Jmol-12.2.23-full.tar.gz. => SHA256 Checksum OK for selfSignedCertificate.cer. => SHA256 Checksum OK for selfSignedCertificate.store. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for jmol-12.2.23 =========================================================================== =======================<phase: build-depends >============================ ===> jmol-12.2.23 depends on file: /usr/local/openjdk6/bin/java - not found ===> Verifying install for /usr/local/openjdk6/bin/java in /usr/ports/java/openjdk6 ===> Installing existing package /packages/All/openjdk6-b28_3.txz Installing openjdk6-b28_3...Installing dejavu-2.34...Installing fontconfig-2.10.95,1...Installing expat-2.1.0... done Installing freetype2-2.5.0.1... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 1 dirs /usr/local/lib/X11/fonts/local: caching, new cache contents: 0 fonts, 0 dirs /root/.local/share/fonts: skipping, no such directory /root/.fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory /root/.cache/fontconfig: not cleaning non-existent cache directory /root/.fontconfig: not cleaning non-existent cache directory fc-cache: succeeded done done Installing fixesproto-5.0... done Installing inputproto-2.3... done Installing java-zoneinfo-2013.g... done Installing javavmwrapper-2.4_3... done Installing jpeg-8_4... done Installing kbproto-1.0.6... done Installing libICE-1.0.8,1...Installing xproto-7.0.24... done done Installing libSM-1.2.2,1... done Installing libX11-1.6.2,1...Installing libXau-1.0.8... done Installing libXdmcp-1.1.1... done Installing libpthread-stubs-0.3_4... done Installing libxcb-1.9.1...Installing libxml2-2.8.0_2... done done done Installing libXaw-1.0.12,2...Installing xextproto-7.2.1... done Installing printproto-1.0.5... done Installing libXpm-3.5.11...Installing libXext-1.3.2,1... done Installing libXt-1.1.4,1... done done Installing libXp-1.0.2,1... done Installing libXmu-1.1.2,1... done done Installing libXfixes-5.0.1... done Installing libXft-2.3.1...Installing renderproto-0.11.1... done Installing libXrender-0.9.8... done done Installing libXi-1.7.2,1... done Installing libXtst-1.2.2...Installing recordproto-1.14.2... done done Installing open-motif-2.3.4...Installing xbitmaps-1.1.1... done Installing png-1.5.17... done done done Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/lib/X11/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ====================================================================== This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and procfs(5) mounted on /proc. If you have not done it yet, please do the following: mount -t fdescfs fdesc /dev/fd mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: fdesc /dev/fd fdescfs rw 0 0 proc /proc procfs rw 0 0 ====================================================================== ===> Returning to build of jmol-12.2.23 ===> jmol-12.2.23 depends on file: /usr/local/bin/ant - not found ===> Verifying install for /usr/local/bin/ant in /usr/ports/devel/apache-ant ===> Installing existing package /packages/All/apache-ant-1.8.4.txz Installing apache-ant-1.8.4... done ===> Returning to build of jmol-12.2.23 =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for jmol-12.2.23 =========================================================================== =======================<phase: build >============================ ===> Building for jmol-12.2.23 Buildfile: /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/build.xml init: classes: [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/build/classes [javac] Compiling 575 source files to /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/build/classes [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [copy] Copying 142 files to /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/build/classes setup: check.docbook-xml: [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/build/docbook-xml [unzip] Expanding: /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/doc/docbook-xml-4.4.zip into /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/build/docbook-xml [touch] Creating /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/build/docbook-xml.timestamp check.docbook-xsl: [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/build/docbook-xsl-1.75.2 [untar] Expanding: /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/doc/docbook-xsl-1.75.2.tar.gz into /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/build [touch] Creating /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/build/docbook-xsl-1.75.2.timestamp check.xsl: initdoc: jmolGuide: [echo] Generating user's guide [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/build/doc/JmolUserGuide [java] Writing ch01.html for chapter(intro) [java] Writing ch02s02.html for section(OptionScript) [java] Writing ch02s03.html for section(OptionGeometry) [java] Writing ch02s04.html for section(OptionLanguage) [java] Writing ch02s05.html for section(OptionSpeed) [java] Writing ch02s06.html for section(OptionPluginDir) [java] Writing ch02s07.html for section(OptionXmx) [java] Writing ch02.html for chapter(commandlineoptions) [java] Writing ch03s02.html for section(EditMenu) [java] Writing ch03s03.html for section(DisplayMenu) [java] Writing ch03s04.html for section(ViewMenu) [java] Writing ch03s05.html for section(HelpMenu) [java] Writing ch03.html for chapter(menudesc) [java] Element img in namespace '' encountered in para, but no template matches. [java] Element img in namespace '' encountered in para, but no template matches. [java] Element img in namespace '' encountered in para, but no template matches. [java] Writing ch04.html for chapter(rasmol) [java] Writing index.html for book [echo] Generating user's guide (fr) [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/build/doc/JmolUserGuide_fr [java] Writing ch01.html for chapter(intro) [java] Writing ch02s02.html for section(OptionLanguage) [java] Writing ch02s03.html for section(OptionSpeed) [java] Writing ch02s04.html for section(OptionXmx) [java] Writing ch02.html for chapter(commandlineoptions) [java] Writing ch03s02.html for section(EditMenu) [java] Writing ch03s03.html for section(DisplayMenu) [java] Writing ch03s04.html for section(ViewMenu) [java] Writing ch03s05.html for section(HelpMenu) [java] Writing ch03.html for chapter(menudesc) [java] Element img in namespace '' encountered in para, but no template matches. [java] Element img in namespace '' encountered in para, but no template matches. [java] Element img in namespace '' encountered in para, but no template matches. [java] Writing ch04.html for chapter(rasmol) [java] Writing index.html for book jmolHistory: [echo] Generating history of changes [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/build/doc/JmolHistory [echo] Generating history of changes (fr) [echo] Generating history of changes (nl) jmolDevelopersGuide: [echo] Generating developer's guide [echo] Generating developer's guide (fr) [echo] Generating developer's guide (de) check.libjars: libjars: [mkdir] Created dir: /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/build/appjars [unjar] Expanding: /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/jars/vecmath1.2-1.14.jar into /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/build/appjars [unjar] Expanding: /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/jars/naga-2_1-r42.jar into /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/build/appjars [unjar] Expanding: /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/jars/itext-1.4.5.jar into /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/build/appjars [unjar] Expanding: /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/jars/commons-cli-1.0.jar into /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/build/appjars [touch] Creating /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/build/libjars.timestamp main-i18n: init-i18n: check-executables: # # A fatal error has been detected by the Java Runtime Environment: # # Internal Error (x86_32.ad:1110), pid=53783, tid=101961 # Error: Unimplemented() # # JRE version: 6.0_32-b28 # Java VM: OpenJDK Server VM (23.25-b01 mixed mode bsd-x86 ) # Core dump written. Default location: /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/core or core.53783 # # An error report file with more information is saved as: # /wrkdirs/usr/ports/science/jmol/work/jmol-12.2.23/hs_err_pid53783.log # # If you would like to submit a bug report, please visit: # http://bugreport.sun.com/bugreport/crash.jsp # *** Signal 6 Stop. make: stopped in /usr/ports/science/jmol ===> Cleaning for jmol-12.2.23
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