Date: Wed, 10 Apr 2019 18:31:21 GMT From: pkg-fallout@FreeBSD.org To: yuri@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - head-amd64-default][science/openmx] Failed for openmx-3.8.5_2 in build Message-ID: <201904101831.x3AIVLg2078281@beefy12.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: gerald@FreeBSD.org Ident: $FreeBSD: head/science/openmx/Makefile 487272 2018-12-12 01:35:33Z gerald $ Log URL: http://beefy12.nyi.freebsd.org/data/head-amd64-default/p498440_s346039/logs/openmx-3.8.5_2.log Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p498440_s346039 Log: =>> Building science/openmx build started at Wed Apr 10 18:24:10 UTC 2019 port directory: /usr/ports/science/openmx package name: openmx-3.8.5_2 building for: FreeBSD head-amd64-default-job-19 13.0-CURRENT FreeBSD 13.0-CURRENT 1300018 amd64 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/science/openmx/Makefile 487272 2018-12-12 01:35:33Z gerald $ Poudriere version: 3.2.8-3-g02cc9753 Host OSVERSION: 1300009 Jail OSVERSION: 1300018 Job Id: 19 !!! Jail is newer than host. (Jail: 1300018, Host: 1300009) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300018 UNAME_v=FreeBSD 13.0-CURRENT 1300018 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-3-g02cc9753 MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for openmx-3.8.5_2: SIMD=on: Use CPU-specific optimizations ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/openmx/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/openmx/work HOME=/wrkdirs/usr/ports/science/openmx/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/openmx/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- MPICH_CC=cc F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/wrkdirs/usr/ports/science/openmx/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/openmx/work HOME=/wrkdirs/usr/ports/science/openmx/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/openmx/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isyst em /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" /usr/local/lib/gcc8/libgcc_s.so /usr/local/lib/libmpifort.so -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -fstack-protector -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/openmx" EXAMPLESDIR="share/examples/openmx" DATADIR="share/openmx" WWWDIR="www/openmx" ETCDIR="etc/openmx" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/openmx DOCSDIR=/usr/local/share/doc/openmx EXAMPLESDIR=/usr/local/share/examples/openmx WWWDIR=/usr/local/www/openmx ETCDIR=/usr/local/etc/openmx --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300018 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> openmx-3.8.5_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [head-amd64-default-job-19] Installing pkg-1.10.5_5... [head-amd64-default-job-19] Extracting pkg-1.10.5_5: .......... done ===> openmx-3.8.5_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of openmx-3.8.5_2 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by openmx-3.8.5_2 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by openmx-3.8.5_2 for building => SHA256 Checksum OK for openmx/openmx3.8.tar.gz. => SHA256 Checksum OK for openmx/patch3.8.5.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by openmx-3.8.5_2 for building ===> Extracting for openmx-3.8.5_2 => SHA256 Checksum OK for openmx/openmx3.8.tar.gz. => SHA256 Checksum OK for openmx/patch3.8.5.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for openmx-3.8.5_2 ===> Converting DOS text files to UNIX text files <snip> ( ) neb.c:2852:9: note: use '==' to turn this assignment into an equality comparison if (fp=input_find("<NEB.Atoms.SpeciesAndCoordinates") ) { ^ == neb.c:2999:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (fp=input_find(keyword) ) { ~~^~~~~~~~~~~~~~~~~~~~ neb.c:2999:13: note: place parentheses around the assignment to silence this warning if (fp=input_find(keyword) ) { ^ ( ) neb.c:2999:13: note: use '==' to turn this assignment into an equality comparison if (fp=input_find(keyword) ) { ^ == neb.c:3102:9: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (fp=input_find("<MD.Fixed.XYZ")) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ neb.c:3102:9: note: place parentheses around the assignment to silence this warning if (fp=input_find("<MD.Fixed.XYZ")) { ^ ( ) neb.c:3102:9: note: use '==' to turn this assignment into an equality comparison if (fp=input_find("<MD.Fixed.XYZ")) { ^ == 9 warnings generated. mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c neb_run.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c neb_check.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c cellopt.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c TRAN_Allocate_NC.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c TRAN_DFT_NC.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c TRAN_Set_CentOverlap_NC.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c TRAN_Set_SurfOverlap_NC.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c TRAN_Calc_OneTransmission.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c TRAN_Main_Analysis.c TRAN_Main_Analysis.c:1062:70: warning: equality comparison result unused [-Wunused-comparison] if (TRAN_Channel_Nenergy * TRAN_Channel_Nkpoint <= 0) TRAN_Channel == 0; ~~~~~~~~~~~~~^~~~ TRAN_Main_Analysis.c:1062:70: note: use '=' to turn this equality comparison into an assignment if (TRAN_Channel_Nenergy * TRAN_Channel_Nkpoint <= 0) TRAN_Channel == 0; ^~ = TRAN_Main_Analysis.c:3315:12: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (fp = input_find("<NEGF.Channel.kpoint")) { ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ TRAN_Main_Analysis.c:3315:12: note: place parentheses around the assignment to silence this warning if (fp = input_find("<NEGF.Channel.kpoint")) { ^ ( ) TRAN_Main_Analysis.c:3315:12: note: use '==' to turn this assignment into an equality comparison if (fp = input_find("<NEGF.Channel.kpoint")) { ^ == TRAN_Main_Analysis.c:3361:12: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (fp = input_find("<NEGF.Channel.Energy")){ ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ TRAN_Main_Analysis.c:3361:12: note: place parentheses around the assignment to silence this warning if (fp = input_find("<NEGF.Channel.Energy")){ ^ ( ) TRAN_Main_Analysis.c:3361:12: note: use '==' to turn this assignment into an equality comparison if (fp = input_find("<NEGF.Channel.Energy")){ ^ == 3 warnings generated. mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c TRAN_Main_Analysis_NC.c TRAN_Main_Analysis_NC.c:1008:70: warning: equality comparison result unused [-Wunused-comparison] if (TRAN_Channel_Nenergy * TRAN_Channel_Nkpoint <= 0) TRAN_Channel == 0; ~~~~~~~~~~~~~^~~~ TRAN_Main_Analysis_NC.c:1008:70: note: use '=' to turn this equality comparison into an assignment if (TRAN_Channel_Nenergy * TRAN_Channel_Nkpoint <= 0) TRAN_Channel == 0; ^~ = TRAN_Main_Analysis_NC.c:3383:12: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (fp = input_find("<NEGF.Channel.kpoint")) { ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ TRAN_Main_Analysis_NC.c:3383:12: note: place parentheses around the assignment to silence this warning if (fp = input_find("<NEGF.Channel.kpoint")) { ^ ( ) TRAN_Main_Analysis_NC.c:3383:12: note: use '==' to turn this assignment into an equality comparison if (fp = input_find("<NEGF.Channel.kpoint")) { ^ == TRAN_Main_Analysis_NC.c:3429:12: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (fp = input_find("<NEGF.Channel.Energy")){ ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ TRAN_Main_Analysis_NC.c:3429:12: note: place parentheses around the assignment to silence this warning if (fp = input_find("<NEGF.Channel.Energy")){ ^ ( ) TRAN_Main_Analysis_NC.c:3429:12: note: use '==' to turn this assignment into an equality comparison if (fp = input_find("<NEGF.Channel.Energy")){ ^ == 3 warnings generated. mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c MTRAN_EigenChannel.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c TRAN_Channel_Functions.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c TRAN_Channel_Output.c TRAN_Channel_Output.c:127:7: warning: implicitly declaring library function 'strcmp' with type 'int (const char *, const char *)' [-Wimplicit-function-declaration] if (strcmp(op, "r") == 0) { cmd = 1; } ^ TRAN_Channel_Output.c:127:7: note: include the header <string.h> or explicitly provide a declaration for 'strcmp' TRAN_Channel_Output.c:400:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int] TRAN_Output_ChannelCube( ^ TRAN_Channel_Output.c:516:9: warning: implicit declaration of function 'fsync' is invalid in C99 [-Wimplicit-function-declaration] fsync(fd); ^ TRAN_Channel_Output.c:547:9: warning: implicit declaration of function 'fsync' is invalid in C99 [-Wimplicit-function-declaration] fsync(fd); ^ TRAN_Channel_Output.c:566:1: warning: control reaches end of non-void function [-Wreturn-type] } /* TRAN_Output_ChannelCube */ ^ 5 warnings generated. mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c TRAN_Calc_CurrentDensity.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c TRAN_CDen_Main.c TRAN_CDen_Main.c:817:11: warning: implicit declaration of function 'fsync' is invalid in C99 [-Wimplicit-function-declaration] fsync(fd); ^ 1 warning generated. mpif90 -O -Wl,-rpath=/usr/local/lib/gcc8 -fopenmp -c elpa1.f90 mpif90 -O -Wl,-rpath=/usr/local/lib/gcc8 -fopenmp -c solve_evp_real.f90 mpif90 -O -Wl,-rpath=/usr/local/lib/gcc8 -fopenmp -c solve_evp_complex.f90 mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c NBO_Cluster.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -c NBO_Krylov.c NBO_Krylov.c:471:13: warning: implicit declaration of function 'omp_get_thread_num' is invalid in C99 [-Wimplicit-function-declaration] OMPID = omp_get_thread_num(); ^ NBO_Krylov.c:472:14: warning: implicit declaration of function 'omp_get_num_threads' is invalid in C99 [-Wimplicit-function-declaration] Nthrds = omp_get_num_threads(); ^ NBO_Krylov.c:473:14: warning: implicit declaration of function 'omp_get_num_procs' is invalid in C99 [-Wimplicit-function-declaration] Nprocs = omp_get_num_procs(); ^ 3 warnings generated. mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx.o exx.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx_index.o exx_index.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx_vector.o exx_vector.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx_log.o exx_log.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx_step1.o exx_step1.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx_step2.o exx_step2.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx_file_overlap.o exx_file_overlap.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx_file_eri.o exx_file_eri.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx_interface_openmx.o exx_interface_openmx.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx_debug.o exx_debug.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx_xc.o exx_xc.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o exx_rhox.o exx_rhox.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o liberi-091216/source/eri.o liberi-091216/source/eri.c liberi-091216/source/eri.c:133:43: warning: passing 'double *[3]' to parameter of type 'const double **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers] ERI_LL_Overlap_d(solver, p, dp, alp1, dalp1, alp2, dalp2, cx); ^~~~~ ./liberi-091216/source/eri.h:532:17: note: passing argument to parameter 'da1' here const double *da1[3], ^ liberi-091216/source/eri.c:133:56: warning: passing 'double *[3]' to parameter of type 'const double **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers] ERI_LL_Overlap_d(solver, p, dp, alp1, dalp1, alp2, dalp2, cx); ^~~~~ ./liberi-091216/source/eri.h:534:17: note: passing argument to parameter 'da2' here const double *da2[3], ^ liberi-091216/source/eri.c:228:35: warning: incompatible pointer types passing 'double *' to parameter of type 'double (*)[3][2]' [-Wincompatible-pointer-types] ERI_Integral_GL_d(solver, I4, dI4, glF, glG, dglF, dglG, ^~~ ./liberi-091216/source/eri.h:574:17: note: passing argument to parameter 'dI4' here double dI4[4][3][2], ^ liberi-091216/source/eri.c:228:50: warning: passing 'double *[3]' to parameter of type 'const double **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers] ERI_Integral_GL_d(solver, I4, dI4, glF, glG, dglF, dglG, ^~~~ ./liberi-091216/source/eri.h:577:17: note: passing argument to parameter 'dF1' here const double *dF1[3], /* (IN) Overlap matrix */ ^ liberi-091216/source/eri.c:228:56: warning: passing 'double *[3]' to parameter of type 'const double **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers] ERI_Integral_GL_d(solver, I4, dI4, glF, glG, dglF, dglG, ^~~~ ./liberi-091216/source/eri.h:578:17: note: passing argument to parameter 'dF2' here const double *dF2[3], /* (IN) */ ^ 5 warnings generated. mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o liberi-091216/source/eri_ll.o liberi-091216/source/eri_ll.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o liberi-091216/source/eri_sf.o liberi-091216/source/eri_sf.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o liberi-091216/source/eri_interpolate.o liberi-091216/source/eri_interpolate.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o liberi-091216/source/eri_gtbl.o liberi-091216/source/eri_gtbl.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o liberi-091216/source/sbt/eri_sbt.o liberi-091216/source/sbt/eri_sbt.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o liberi-091216/source/sbt/log/eri_fsbt.o liberi-091216/source/sbt/log/eri_fsbt.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o liberi-091216/source/sbt/log/eri_logfsbt.o liberi-091216/source/sbt/log/eri_logfsbt.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -c -o liberi-091216/source/sbt/linear/eri_linfsbt.o liberi-091216/source/sbt/linear/eri_linfsbt.c mpicc -O2 -pipe -Dkcomp -msse -msse2 -mfpmath=sse -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -fopenmp -I./liberi-091216/source openmx.o openmx_common.o Input_std.o Inputtools.o init.o LU_inverse.o ReLU_inverse.o truncation.o readfile.o FT_PAO.o FT_NLP.o FT_ProExpn_VNA.o FT_VNA.o FT_ProductPAO.o Hamiltonian_Cluster.o Hamiltonian_Cluster_Hs.o Overlap_Cluster.o Hamiltonian_Band.o Overlap_Band.o Hamiltonian_Cluster_NC.o Hamiltonian_Band_NC.o Hamiltonian_Cluster_SO.o Get_OneD_HS_Col.o SetPara_DFT.o XC_Ceperly_Alder.o XC_CA_LSDA.o XC_PW92C.o XC_PBE.o XC_EX.o DFT.o Mixing_DM.o Mixing_H.o Force.o Stress.o Poisson.o Poisson_ESM.o Cluster_DFT.o Cluster_DFT_ScaLAPACK.o Cluster_DFT_Dosout.o Cluster_DFT_ON2.o Band_DFT_Col.o Band_DFT_Col_ScaLAPACK.o Band_DFT_NonCol.o Band_DFT_kpath.o Band_DFT_MO.o Unfolding_Bands.o Band_DFT_Dosout.o Set_Density_Grid.o Set_Orbitals_Grid.o Set_Aden_Grid.o Gauss_Legendre.o zero_cfrac.o xyz2spherical.o AngularF.o RadialF.o Dr_RadialF.o PhiF.o VNAF.o Dr_VNAF.o VH_AtomF.o Dr_VH_AtomF.o RF_BesselF.o QuickSort.o Nonlocal_RadialF.o KumoF.o Dr_KumoF.o Mulliken_Charge.o Occupation_Number_LDA_U.o Eff_Hub_Pot.o EulerAngle_Spin.o Smoothing_Func.o Orbital_Moment.o Pot_NeutralAtom.o Simple_Mixing_DM.o DIIS_Mixing_DM.o ADIIS_Mixing_DM.o GR_Pulay_DM.o Kerker_Mixing_Rhok.o DIIS_Mixing_Rhok.o Total_Energy.o Contract_Hamiltonian.o Contract_iHNL.o Cont_Matrix0.o Cont_Matrix1.o Cont_Matrix2.o Cont_Matrix3.o Cont_Matrix4.o Opt_Contraction.o Initial_CntCoes.o Initial_CntCoes2.o Set_XC_Grid.o Get_Orbitals.o Get_dOrbitals.o Get_Cnt_Orbitals.o Get_Cnt_dOrbitals.o Gaunt.o Find_CGrids.o MD_pac.o RestartFileDFT.o Output_CompTime.o Merge_LogFile.o Make_FracCoord.o Make_InputFile_with_FinalCoord.o Output_Energy_Decomposition.o Divide_Conquer.o Krylov.o EC.o Divide_Conquer_Dosout.o Eigen_lapack.o Eigen_lapack2.o Eigen_lapack3.o EigenBand_lapack.o Eigen_PReHH.o BroadCast_ReMatrix.o Eigen_PHH.o BroadCast_ComplexMatrix.o lapack_dstedc1.o lapack_dstedc 2.o lapack_dstedc3.o lapack_dstegr1.o lapack! _dstegr2..o lapack_dstegr3.o lapack_dstevx1.o lapack_dstevx2.o lapack_dstevx3.o lapack_dstevx4.o lapack_dstevx5.o lapack_dsteqr1.o Nonlocal_Basis.o Set_OLP_Kin.o Set_Nonlocal.o Set_ProExpn_VNA.o Set_Hamiltonian.o Set_Vpot.o Voronoi_Charge.o Voronoi_Orbital_Moment.o Fuzzy_Weight.o dampingF.o deri_dampingF.o Spherical_Bessel.o iterout.o iterout_md.o Allocate_Arrays.o Free_Arrays.o Init_List_YOUSO.o outputfile1.o malloc_multidimarray.o PrintMemory.o PrintMemory_Fix.o dtime.o OutData.o OutData_Binary.o init_alloc_first.o File_CntCoes.o SCF2File.o mimic_sse.o Make_Comm_Worlds.o Set_Allocate_Atom2CPU.o Cutoff.o Generating_MP_Special_Kpt.o Maketest.o Runtest.o Memory_Leak_test.o Force_test.o Stress_test.o Show_DFT_DATA.o Generate_Wannier.o TRAN_Allocate.o TRAN_DFT.o TRAN_DFT_Dosout.o TRAN_Apply_Bias2e.o TRAN_Deallocate_Electrode_Grid.o TRAN_Deallocate_RestartFile.o TRAN_RestartFile.o TRAN_Calc_CentGreen.o TRAN_Input_std.o TRAN_Set_CentOverlap.o TRAN_Calc_CentGreenLesser.o TRAN_Input_std_At oms.o TRAN_Set_Electrode_Grid.o TRAN_Calc_GridBound.o TRAN_Set_IntegPath.o TRAN_Output_HKS.o TRAN_Set_MP.o TRAN_Calc_SelfEnergy.o TRAN_Output_Trans_HS.o TRAN_Calc_Hopping_G.o TRAN_Calc_SurfGreen.o TRAN_Set_SurfOverlap.o TRAN_Add_Density_Lead.o TRAN_Add_ADensity_Lead.o TRAN_Set_Value.o TRAN_Poisson.o TRAN_adjust_Ngrid.o TRAN_Print.o TRAN_Print_Grid.o Lapack_LU_inverse.o TRAN_Distribute_Node.o TRAN_Output_HKS_Write_Grid.o TRAN_Credit.o TRAN_Check_Region_Lead.o TRAN_Check_Region.o TRAN_Check_Input.o DFTDvdW_init.o DFTD3vdW_init.o neb.o neb_run.o neb_check.o cellopt.o TRAN_Allocate_NC.o TRAN_DFT_NC.o TRAN_Set_CentOverlap_NC.o TRAN_Set_SurfOverlap_NC.o TRAN_Calc_OneTransmission.o TRAN_Main_Analysis.o TRAN_Main_Analysis_NC.o MTRAN_EigenChannel.o TRAN_Channel_Functions.o TRAN_Channel_Output.o TRAN_Calc_CurrentDensity.o TRAN_CDen_Main.o elpa1.o solve_evp_real.o solve_evp_complex.o NBO_Cluster.o NBO_Krylov.o exx.o exx_index.o exx_vector.o exx_log.o exx_step1.o exx_step2.o exx_file_overlap.o exx_file_eri.o exx_interface_openmx.o exx_d! ebug.o exx! _xc.o exx_rhox.o ./liberi-091216/source/eri.o ./liberi-091216/source/eri_ll.o ./liberi-091216/source/eri_sf.o ./liberi-091216/source/eri_interpolate.o ./liberi-091216/source/eri_gtbl.o ./liberi-091216/source/sbt/eri_sbt.o ./liberi-091216/source/sbt/log/eri_fsbt.o ./liberi-091216/source/sbt/log/eri_logfsbt.o ./liberi-091216/source/sbt/linear/eri_linfsbt.o /usr/local/lib/gcc8/libgcc_s.so /usr/local/lib/libmpifort.so -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -fstack-protector -L/usr/local/lib -lpthread -llapack -lblas -lgfortran -lfftw3 -liomp5 -lm -o openmx /usr/local/bin/ld: cannot find -liomp5 cc: error: linker command failed with exit code 1 (use -v to see invocation) gmake[1]: *** [makefile:253: openmx] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/openmx/work/openmx3.8/source' *** Error code 1 Stop. make: stopped in /usr/ports/science/openmx
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