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Date:      Wed, 6 Nov 2002 09:54:11 +1100 (EST)
From:      Camson Huynh <chuynh@biolateral.com.au>
To:        FreeBSD-gnats-submit@FreeBSD.org
Subject:   ports/44957: Update Port: biology/spdbv
Message-ID:  <200211052254.gA5MsBLv004438@oasis.bio>

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>Number:         44957
>Category:       ports
>Synopsis:       Update Port: biology/spdbv
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          update
>Submitter-Id:   current-users
>Arrival-Date:   Tue Nov 05 15:00:09 PST 2002
>Closed-Date:
>Last-Modified:
>Originator:     Camson Huynh
>Release:        FreeBSD 4.7-STABLE i386
>Organization:
BioLateral Pty Ltd
>Environment:
System: FreeBSD oasis.bio 4.7-STABLE FreeBSD 4.7-STABLE #0: Tue Oct 29 11:56:38 EST 2002 root@oasis.bio:/usr/obj/disk/usr/src/sys/OASIS i386


	
>Description:
Swiss-PdbViewer is an application that provides a user friendly interface
allowing to analyse several proteins at the same time. The proteins can be
superimposed in order to deduce structural alignments and compare their
active sites or any other relevant parts. Amino acid mutations, H-bonds,
angles and distances between atoms are easy to obtain thanks to the
intuitive graphic and menu interface. 

Moreover, Swiss-PdbViewer is tightly linked to Swiss-Model, an automated
homology modelling server developped at Glaxo Welcome Experimental Research
in Geneva. Working with these two programs greatly reduces the amount of work
necessary to generate models, as it is possible to thread a protein primary
sequence onto a 3D template and get an immediate feedback of how well the
threaded protein will be accepted by the reference structure before
submitting a request to build missing loops and refine sidechain packing.

Swiss-PdbViewer can also read electron density maps, and provides various
tools to build into the density. In addition, various modelling tools are
integrated and command files for popular energy minimisation packages can be
generated.

Finally, as a special bonus, POV-Ray scenes can be generated from the
current view in order to make stunning ray-traced quality images.

WWW:  http://www.expasy.ch/spdbv/

>How-To-Repeat:
	
>Fix:

diff -ruN spdbv.orig/Makefile spdbv/Makefile
--- spdbv.orig/Makefile	Wed Nov  6 09:39:53 2002
+++ spdbv/Makefile	Wed Nov  6 09:45:04 2002
@@ -6,7 +6,7 @@
 #
 
 PORTNAME=	spdbv
-PORTVERSION=	37b2
+PORTVERSION=	3.7
 CATEGORIES=	biology
 MASTER_SITES=	http://au.expasy.org/spdbv/program/ \
 				http://www.expasy.org/spdbv/program/ \
@@ -17,16 +17,18 @@
 				http://inn-prot.weizmann.ac.il/spdbv/program/\
 				http://www.usm.maine.edu/spdbv/program/ \
 				http://www.genebee.msu.ru/spdbv/program/
-DISTNAME=	${PORTNAME}${PORTVERSION}_IRIX_Linux
+DISTNAME=	${PORTNAME}${PORTVERSION:C/\.//}-Linux
 
 MAINTAINER=	chuynh@biolateral.com.au
 
-RUN_DEPENDS=	${LINUXBASE}${X11BASE}/lib/libMesaGL.so.3:${PORTSDIR}/graphics/linux_mesa3
+RUN_DEPENDS=	${LINUXBASE}${X11BASE}/lib/libMesaGL.so.3:${PORTSDIR}/graphics/linux_mesa3 \
+				${LINUXBASE}${X11BASE}/lib/libXm.so.2:${PORTSDIR}/x11-toolkits/linux-openmotif
 
 SPDBV=	SPDBV
 
 WRKSRC=		${WRKDIR}/SPDBV_DISTRIBUTION
 
+USE_LINUX=	yes
 NO_BUILD=	yes
 NO_CDROM=	"Must be downloaded direct from Expasy via www interface"
 
diff -ruN spdbv.orig/distinfo spdbv/distinfo
--- spdbv.orig/distinfo	Wed Nov  6 09:39:53 2002
+++ spdbv/distinfo	Wed Nov  6 09:45:12 2002
@@ -1 +1 @@
-MD5 (spdbv37b2_IRIX_Linux.tar.gz) = 28513cb85c8e09493d8be535e76076a3
+MD5 (spdbv37-Linux.tar.gz) = 502394bb3d12fcaad89e80cc3398b0da
diff -ruN spdbv.orig/files/patch-aa spdbv/files/patch-aa
--- spdbv.orig/files/patch-aa	Wed Nov  6 09:39:53 2002
+++ spdbv/files/patch-aa	Wed Nov  6 09:47:55 2002
@@ -1,7 +1,7 @@
---- install.sh.orig	Mon Dec  4 21:31:45 2000
-+++ install.sh	Thu Dec 20 10:15:42 2001
+--- install.sh.orig	Tue Nov  5 13:55:58 2002
++++ install.sh	Tue Nov  5 14:02:10 2002
 @@ -7,10 +7,9 @@
- SPDBVNEEDOSbis="Linux"
+ SPDBVNEEDOS="Linux"
  
  SPDBVUSERDIR="$HOME"
 -SPDBVSHAREDIR="/usr/share"
@@ -30,27 +30,27 @@
 -        else
 -            abort
 -        fi
-+        echo " "
-+        echo "will reinstall"
++		echo " "
++		echo "will reinstall"
      fi
      mkdir $SPDBVDEST/$SPDBVDIR #2> /dev/null
      if [ ! -d $SPDBVDEST/$SPDBVDIR ]; then
-@@ -64,11 +51,11 @@
-     chmod ugo+rx $SPDBVDEST/$SPDBVDIR/bin/spdbv.sh
+@@ -63,11 +50,11 @@
+     chmod ugo+rx $SPDBVDEST/$SPDBVDIR/bin/spdbv
  
-     #try to make link from /usr/bin/spdbv to ./spdbv.sh
+     #try to make link from /usr/bin/spdbv to ./spdbv
 -    if [ ! -w /usr/bin/ ]; then
 +    if [ ! -w ${SPDBVDEST}/bin/ ]; then
         echo " "
--       echo "Can't make a link from /usr/bin/spdbv to spdbv.sh"
-+       echo "Can't make a link from ${SPDBVDEST}/bin/spdbv to spdbv.sh"
+-       echo "Can't make a link from /usr/bin/spdbv to $SPDBVDEST/$SPDBVDIR/bin/spdbv"
++       echo "Can't make a link from ${SPDBVDEST}/bin/spdbv to $SPDBVDEST/$SPDBVDIR/bin/spdbv"
      else
--       ln -sf $SPDBVDEST/$SPDBVDIR/bin/spdbv.sh /usr/bin/spdbv
-+       ln -sf $SPDBVDEST/$SPDBVDIR/bin/spdbv.sh ${SPDBVDEST}/bin/spdbv
+-       ln -sf $SPDBVDEST/$SPDBVDIR/bin/spdbv /usr/bin/spdbv
++       ln -sf $SPDBVDEST/$SPDBVDIR/bin/spdbv ${SPDBVDEST}/bin/spdbv
      fi
  }
  
-@@ -82,65 +69,18 @@
+@@ -81,65 +68,18 @@
     echo " Installation script for Release $SPDBVVERSION ($SPDBVNEEDOS)"
     echo " " 
     echo " " 
@@ -99,7 +99,7 @@
     echo " Installation script for Release $SPDBVVERSION ($SPDBVNEEDOS)"
     echo " "
     echo "Installation completed."
--   echo "Start your copy of SPDBV with the script $SPDBVDEST/$SPDBVDIR/bin/spdbv.sh"
+-   echo "Start your copy of SPDBV with the script $SPDBVDEST/$SPDBVDIR/bin/spdbv"
     echo ""
     echo "ENJOY SPDBV!"
     exit
diff -ruN spdbv.orig/files/patch-ab spdbv/files/patch-ab
--- spdbv.orig/files/patch-ab	Wed Nov  6 09:39:53 2002
+++ spdbv/files/patch-ab	Tue Nov  5 14:08:23 2002
@@ -1,20 +1,11 @@
---- SPDBV/bin/spdbv-orig.sh.orig	Thu Dec 20 10:11:25 2001
-+++ SPDBV/bin/spdbv-orig.sh	Thu Dec 20 10:26:00 2001
+--- SPDBV/bin/spdbv-orig.sh.orig	Tue Nov  5 14:03:36 2002
++++ SPDBV/bin/spdbv-orig.sh	Tue Nov  5 14:08:19 2002
 @@ -1,6 +1,8 @@
  ARCH=`uname -s`
  if [ $ARCH = IRIX64 ]; then
  	ARCH=IRIX
 +elif [ $ARCH = FreeBSD ]; then
-+	ARCH=Linux
++    ARCH=Linux
  fi
  SPDBV_TEMP=$HOME/SPDBV/temp
  SPDBV_DOWNLOAD=$HOME/SPDBV/download
-@@ -38,7 +40,5 @@
- #xrdb -override $SPDBV_BASE/app-defaults/Spdbv
- 
- #start the SPDBV, reroute stderr to nirvana
--{
--   $SPDBV_BASE/bin/$SPDBV_RELEASE.$ARCH $*
--} 2> /dev/null
-+$SPDBV_BASE/bin/$SPDBV_RELEASE.$ARCH $*
- #done.
diff -ruN spdbv.orig/pkg-plist spdbv/pkg-plist
--- spdbv.orig/pkg-plist	Wed Nov  6 09:39:53 2002
+++ spdbv/pkg-plist	Tue Nov  5 15:44:46 2002
@@ -1,185 +1,254 @@
-SPDBV/_stuff_/AlignWnd.hlp
-SPDBV/_stuff_/CavitInf.hlp
-SPDBV/_stuff_/CtrlPanl.hlp
-SPDBV/_stuff_/DispWnd.hlp
-SPDBV/_stuff_/LayerInf.hlp
-SPDBV/_stuff_/RamaWnd.hlp
-SPDBV/_stuff_/Rotolib.aa
-SPDBV/_stuff_/Rotolib1.aa
-SPDBV/_stuff_/Rotolib2.aa
-SPDBV/_stuff_/SM_req.htm
-SPDBV/_stuff_/SM_templ.htm
+SPDBV/bin/ppov10
+SPDBV/bin/spdbv.Linux
+SPDBV/bin/spdbv
+SPDBV/readme.txt
+SPDBV/news.txt
 SPDBV/_stuff_/XtalInf.hlp
-SPDBV/_stuff_/_loopDB_
-SPDBV/_stuff_/crystmov.txt
-SPDBV/_stuff_/crystsym.txt
-SPDBV/_stuff_/default.PP
-SPDBV/_stuff_/grmparam/angles.prm
-SPDBV/_stuff_/grmparam/bonds.prm
-SPDBV/_stuff_/grmparam/improper.prm
+SPDBV/_stuff_/CavitInf.hlp
+SPDBV/_stuff_/grmparam/CVS/Tag
+SPDBV/_stuff_/grmparam/CVS/Root
+SPDBV/_stuff_/grmparam/CVS/Entries
+SPDBV/_stuff_/grmparam/CVS/Repository
+SPDBV/_stuff_/grmparam/torsion.prm
 SPDBV/_stuff_/grmparam/nbondsel.prm
+SPDBV/_stuff_/grmparam/bonds.prm
 SPDBV/_stuff_/grmparam/nonbonds.prm
-SPDBV/_stuff_/grmparam/torsion.prm
-SPDBV/_stuff_/grmtopol/ALA.tpl
-SPDBV/_stuff_/grmtopol/ARG.tpl
-SPDBV/_stuff_/grmtopol/ARGN.tpl
-SPDBV/_stuff_/grmtopol/ASN.tpl
+SPDBV/_stuff_/grmparam/improper.prm
+SPDBV/_stuff_/grmparam/angles.prm
+SPDBV/_stuff_/gifs/getacro.gif
+SPDBV/_stuff_/gifs/tips.gif
+SPDBV/_stuff_/gifs/userguide.gif
+SPDBV/_stuff_/gifs/feedback.gif
+SPDBV/_stuff_/gifs/artgallery.gif
+SPDBV/_stuff_/gifs/tutorial.gif
+SPDBV/_stuff_/gifs/download.gif
+SPDBV/_stuff_/gifs/references.gif
+SPDBV/_stuff_/gifs/mirror.gif
+SPDBV/_stuff_/gifs/index.gif
+SPDBV/_stuff_/gifs/logo.gif
+SPDBV/_stuff_/text/stereo.htm
+SPDBV/_stuff_/text/loop.htm
+SPDBV/_stuff_/text/fabp.htm
+SPDBV/_stuff_/text/modeling.htm
+SPDBV/_stuff_/text/pattern.htm
+SPDBV/_stuff_/text/rama.htm
+SPDBV/_stuff_/text/faq.htm
+SPDBV/_stuff_/text/torsion.htm
+SPDBV/_stuff_/text/templ_1.html
+SPDBV/_stuff_/text/povscene.htm
+SPDBV/_stuff_/text/build.htm
+SPDBV/_stuff_/text/gromo_pl.htm
+SPDBV/_stuff_/text/activsit.htm
+SPDBV/_stuff_/text/tips.htm
+SPDBV/_stuff_/text/refs.htm
+SPDBV/_stuff_/text/disclaim.htm
+SPDBV/_stuff_/text/render.htm
+SPDBV/_stuff_/text/tools.htm
+SPDBV/_stuff_/text/epot.htm
+SPDBV/_stuff_/text/prefs.htm
+SPDBV/_stuff_/text/color.htm
+SPDBV/_stuff_/text/gallery_local.htm
+SPDBV/_stuff_/text/files.htm
+SPDBV/_stuff_/text/superpos.htm
+SPDBV/_stuff_/text/feedback.htm
+SPDBV/_stuff_/text/cshrc.htm
+SPDBV/_stuff_/text/rendcomp.htm
+SPDBV/_stuff_/text/pov.htm
+SPDBV/_stuff_/text/display.htm
+SPDBV/_stuff_/text/hew.htm
+SPDBV/_stuff_/text/gallery.htm
+SPDBV/_stuff_/text/energy.htm
+SPDBV/_stuff_/text/disclaim_local.htm
+SPDBV/_stuff_/text/mutation.htm
+SPDBV/_stuff_/text/ribbon.htm
+SPDBV/_stuff_/text/transfo.htm
+SPDBV/_stuff_/text/moving.htm
+SPDBV/_stuff_/text/select.htm
+SPDBV/_stuff_/text/edmtut.htm
+SPDBV/_stuff_/text/surface.htm
+SPDBV/_stuff_/text/gromotut.htm
+SPDBV/_stuff_/text/ctrlpanl.htm
+SPDBV/_stuff_/text/tutorial.htm
+SPDBV/_stuff_/text/distort.htm
+SPDBV/_stuff_/text/selmenu.htm
+SPDBV/_stuff_/text/toolmenu.htm
+SPDBV/_stuff_/text/xsymtut.htm
+SPDBV/_stuff_/text/server.htm
+SPDBV/_stuff_/text/mirror.htm
+SPDBV/_stuff_/text/rotolib.htm
+SPDBV/_stuff_/text/edm.htm
+SPDBV/_stuff_/text/main.htm
+SPDBV/_stuff_/text/index.htm
+SPDBV/_stuff_/text/phipsi.htm
+SPDBV/_stuff_/manual.htm
+SPDBV/_stuff_/crystsym.txt
+SPDBV/_stuff_/SM_templ.htm
+SPDBV/_stuff_/grmtopol/CVS/Tag
+SPDBV/_stuff_/grmtopol/CVS/Root
+SPDBV/_stuff_/grmtopol/CVS/Entries
+SPDBV/_stuff_/grmtopol/CVS/Repository
+SPDBV/_stuff_/grmtopol/ATP.tpl
 SPDBV/_stuff_/grmtopol/ASP.tpl
-SPDBV/_stuff_/grmtopol/ASPH.tpl
-SPDBV/_stuff_/grmtopol/CA2.tpl
-SPDBV/_stuff_/grmtopol/CL.tpl
-SPDBV/_stuff_/grmtopol/CU.tpl
-SPDBV/_stuff_/grmtopol/CU1.tpl
-SPDBV/_stuff_/grmtopol/CYS.tpl
-SPDBV/_stuff_/grmtopol/CYS1.tpl
-SPDBV/_stuff_/grmtopol/CYS2.tpl
-SPDBV/_stuff_/grmtopol/CYSH.tpl
-SPDBV/_stuff_/grmtopol/FE.tpl
-SPDBV/_stuff_/grmtopol/GLN.tpl
-SPDBV/_stuff_/grmtopol/GLU.tpl
-SPDBV/_stuff_/grmtopol/GLUH.tpl
-SPDBV/_stuff_/grmtopol/GLY.tpl
-SPDBV/_stuff_/grmtopol/H2O.tpl
-SPDBV/_stuff_/grmtopol/HHT.tpl
-SPDBV/_stuff_/grmtopol/HIS1.tpl
+SPDBV/_stuff_/grmtopol/TRP.tpl
+SPDBV/_stuff_/grmtopol/SEP.tpl
 SPDBV/_stuff_/grmtopol/HISA.tpl
+SPDBV/_stuff_/grmtopol/HIS1.tpl
+SPDBV/_stuff_/grmtopol/CYS1.tpl
+SPDBV/_stuff_/grmtopol/CU1.tpl
+SPDBV/_stuff_/grmtopol/ALA.tpl
+SPDBV/_stuff_/grmtopol/NA.tpl
 SPDBV/_stuff_/grmtopol/HISB.tpl
-SPDBV/_stuff_/grmtopol/HISH.tpl
-SPDBV/_stuff_/grmtopol/ILE.tpl
-SPDBV/_stuff_/grmtopol/LEU.tpl
+SPDBV/_stuff_/grmtopol/CYS2.tpl
+SPDBV/_stuff_/grmtopol/SO42.tpl
+SPDBV/_stuff_/grmtopol/CA2.tpl
+SPDBV/_stuff_/grmtopol/THR.tpl
+SPDBV/_stuff_/grmtopol/TYR.tpl
+SPDBV/_stuff_/grmtopol/SER.tpl
 SPDBV/_stuff_/grmtopol/LYS.tpl
-SPDBV/_stuff_/grmtopol/LYSH.tpl
+SPDBV/_stuff_/grmtopol/CYS.tpl
+SPDBV/_stuff_/grmtopol/OXT.tpl
 SPDBV/_stuff_/grmtopol/MET.tpl
-SPDBV/_stuff_/grmtopol/MG.tpl
-SPDBV/_stuff_/grmtopol/MN.tpl
+SPDBV/_stuff_/grmtopol/HHT.tpl
+SPDBV/_stuff_/grmtopol/LEU.tpl
 SPDBV/_stuff_/grmtopol/MSE.tpl
-SPDBV/_stuff_/grmtopol/NA.tpl
-SPDBV/_stuff_/grmtopol/OXT.tpl
+SPDBV/_stuff_/grmtopol/ILE.tpl
+SPDBV/_stuff_/grmtopol/GLU.tpl
 SPDBV/_stuff_/grmtopol/PHE.tpl
-SPDBV/_stuff_/grmtopol/PRO.tpl
-SPDBV/_stuff_/grmtopol/SEP.tpl
-SPDBV/_stuff_/grmtopol/SER.tpl
-SPDBV/_stuff_/grmtopol/SO42.tpl
-SPDBV/_stuff_/grmtopol/THR.tpl
-SPDBV/_stuff_/grmtopol/TPO.tpl
-SPDBV/_stuff_/grmtopol/TRP.tpl
-SPDBV/_stuff_/grmtopol/TYR.tpl
+SPDBV/_stuff_/grmtopol/FE.tpl
+SPDBV/_stuff_/grmtopol/CU.tpl
+SPDBV/_stuff_/grmtopol/ARG.tpl
+SPDBV/_stuff_/grmtopol/MG.tpl
+SPDBV/_stuff_/grmtopol/LYSH.tpl
+SPDBV/_stuff_/grmtopol/HISH.tpl
+SPDBV/_stuff_/grmtopol/GLUH.tpl
+SPDBV/_stuff_/grmtopol/CYSH.tpl
+SPDBV/_stuff_/grmtopol/ASPH.tpl
+SPDBV/_stuff_/grmtopol/GLY.tpl
 SPDBV/_stuff_/grmtopol/VAL.tpl
+SPDBV/_stuff_/grmtopol/CL.tpl
+SPDBV/_stuff_/grmtopol/ARGN.tpl
+SPDBV/_stuff_/grmtopol/GLN.tpl
+SPDBV/_stuff_/grmtopol/ASN.tpl
+SPDBV/_stuff_/grmtopol/MN.tpl
 SPDBV/_stuff_/grmtopol/ZN.tpl
-SPDBV/_stuff_/images/1bnhsmal.gif
-SPDBV/_stuff_/images/1crnE.gif
-SPDBV/_stuff_/images/1crnE2.gif
-SPDBV/_stuff_/images/1ldbcont.gif
-SPDBV/_stuff_/images/1ldbfull.gif
-SPDBV/_stuff_/images/1ldbyell.gif
-SPDBV/_stuff_/images/6pticell.gif
-SPDBV/_stuff_/images/6ptiwat.gif
-SPDBV/_stuff_/images/FASL.gif
-SPDBV/_stuff_/images/activsit.gif
-SPDBV/_stuff_/images/align.gif
-SPDBV/_stuff_/images/balstick.gif
-SPDBV/_stuff_/images/bg.gif
-SPDBV/_stuff_/images/control.gif
-SPDBV/_stuff_/images/edm.gif
-SPDBV/_stuff_/images/edm2.gif
-SPDBV/_stuff_/images/hb.gif
-SPDBV/_stuff_/images/hb_inter.jpg
-SPDBV/_stuff_/images/hb_light.jpg
+SPDBV/_stuff_/grmtopol/H2O.tpl
+SPDBV/_stuff_/grmtopol/TPO.tpl
+SPDBV/_stuff_/grmtopol/PRO.tpl
+SPDBV/_stuff_/tinyloop.txt
+SPDBV/_stuff_/LayerInf.hlp
+SPDBV/_stuff_/crystmov.txt
+SPDBV/_stuff_/AlignWnd.hlp
+SPDBV/_stuff_/RamaWnd.hlp
+SPDBV/_stuff_/CtrlPanl.hlp
+SPDBV/_stuff_/default.PP
+SPDBV/_stuff_/DispWnd.hlp
+SPDBV/_stuff_/mainpage.htm
+SPDBV/_stuff_/SM_req.htm
+SPDBV/_stuff_/images/getacro.gif
+SPDBV/_stuff_/images/rotamer6.gif
 SPDBV/_stuff_/images/hb_pov.jpg
-SPDBV/_stuff_/images/hb_std.gif
 SPDBV/_stuff_/images/hb_wire.gif
-SPDBV/_stuff_/images/home.gif
-SPDBV/_stuff_/images/ldb61_65.gif
-SPDBV/_stuff_/images/logo.gif
-SPDBV/_stuff_/images/mixed.gif
-SPDBV/_stuff_/images/model1.gif
-SPDBV/_stuff_/images/model2.gif
-SPDBV/_stuff_/images/pov3labl.gif
-SPDBV/_stuff_/images/rama.gif
+SPDBV/_stuff_/images/phe1.gif
 SPDBV/_stuff_/images/rib1.gif
+SPDBV/_stuff_/images/rama.gif
+SPDBV/_stuff_/images/sup1.gif
+SPDBV/_stuff_/images/AB1.jpg
+SPDBV/_stuff_/images/hbg_200x150.gif
+SPDBV/_stuff_/images/rotamer4.gif
+SPDBV/_stuff_/images/edm2.gif
+SPDBV/_stuff_/images/phe2.gif
 SPDBV/_stuff_/images/rib2.gif
+SPDBV/_stuff_/images/sup2.gif
+SPDBV/_stuff_/images/hb.gif
+SPDBV/_stuff_/images/AB2.jpg
+SPDBV/_stuff_/images/spacefil.gif
+SPDBV/_stuff_/images/1ldbcont.gif
+SPDBV/_stuff_/images/hb_std.gif
+SPDBV/_stuff_/images/mixed.gif
+SPDBV/_stuff_/images/1crn200x150.jpg
+SPDBV/_stuff_/images/control.gif
+SPDBV/_stuff_/images/bg.gif
+SPDBV/_stuff_/images/activsit.gif
+SPDBV/_stuff_/images/6ptiwat.gif
+SPDBV/_stuff_/images/rotamer5.gif
+SPDBV/_stuff_/images/tips.gif
+SPDBV/_stuff_/images/phe3.gif
 SPDBV/_stuff_/images/rib3.gif
-SPDBV/_stuff_/images/rib3b.gif
-SPDBV/_stuff_/images/smooth3.jpg
+SPDBV/_stuff_/images/userguide.gif
+SPDBV/_stuff_/images/start.gif
+SPDBV/_stuff_/images/1YDRsurf.jpg
 SPDBV/_stuff_/images/smooth3m.jpg
-SPDBV/_stuff_/images/smooth6.jpg
 SPDBV/_stuff_/images/smooth6m.jpg
-SPDBV/_stuff_/images/spacefil.gif
-SPDBV/_stuff_/images/sticks.gif
-SPDBV/_stuff_/images/sup1.gif
-SPDBV/_stuff_/images/sup2.gif
-SPDBV/_stuff_/images/thread1.gif
-SPDBV/_stuff_/images/thread2.gif
-SPDBV/_stuff_/images/tools1.gif
+SPDBV/_stuff_/images/index_gr.gif
+SPDBV/_stuff_/images/rotamer2.gif
+SPDBV/_stuff_/images/wind.gif
+SPDBV/_stuff_/images/soft.gif
+SPDBV/_stuff_/images/explorer.gif
 SPDBV/_stuff_/images/tools2.gif
+SPDBV/_stuff_/images/mirror_gr.gif
+SPDBV/_stuff_/images/feedback.gif
+SPDBV/_stuff_/images/rotamer3.gif
+SPDBV/_stuff_/images/home.gif
+SPDBV/_stuff_/images/rib3b.gif
+SPDBV/_stuff_/images/thread2.gif
 SPDBV/_stuff_/images/tools3.gif
+SPDBV/_stuff_/images/ldb61_65.gif
+SPDBV/_stuff_/images/1crnE.gif
+SPDBV/_stuff_/images/ar-up.gif
+SPDBV/_stuff_/images/thread1.gif
+SPDBV/_stuff_/images/tutorial_gr.gif
+SPDBV/_stuff_/images/rotamer1.gif
+SPDBV/_stuff_/images/artgallery.gif
+SPDBV/_stuff_/images/1YDRpot2.jpg
+SPDBV/_stuff_/images/tools1.gif
+SPDBV/_stuff_/images/1YDRpot.jpg
+SPDBV/_stuff_/images/align.gif
+SPDBV/_stuff_/images/smooth6.jpg
+SPDBV/_stuff_/images/1ldbfull.gif
+SPDBV/_stuff_/images/1ldbyell.gif
+SPDBV/_stuff_/images/import.gif
+SPDBV/_stuff_/images/hb_light.jpg
+SPDBV/_stuff_/images/tutorial.gif
+SPDBV/_stuff_/images/download.gif
+SPDBV/_stuff_/images/mainwnd.gif
+SPDBV/_stuff_/images/pov3now-4.gif
+SPDBV/_stuff_/images/6pticell.gif
+SPDBV/_stuff_/images/1bnhsmal.gif
 SPDBV/_stuff_/images/ucell.gif
-SPDBV/_stuff_/images/wind.gif
-SPDBV/_stuff_/initloop.txt
-SPDBV/_stuff_/mainpage.htm
-SPDBV/_stuff_/manual.htm
-SPDBV/_stuff_/text/activsit.htm
-SPDBV/_stuff_/text/amber_pl.htm
-SPDBV/_stuff_/text/ambertut.htm
-SPDBV/_stuff_/text/build.htm
-SPDBV/_stuff_/text/charm_pl.htm
-SPDBV/_stuff_/text/charmtut.htm
-SPDBV/_stuff_/text/color.htm
-SPDBV/_stuff_/text/cshrc.htm
-SPDBV/_stuff_/text/ctrlpanl.htm
-SPDBV/_stuff_/text/disclaim.htm
-SPDBV/_stuff_/text/display.htm
-SPDBV/_stuff_/text/distort.htm
-SPDBV/_stuff_/text/edm.htm
-SPDBV/_stuff_/text/edmtut.htm
-SPDBV/_stuff_/text/fabp.htm
-SPDBV/_stuff_/text/feedback.htm
-SPDBV/_stuff_/text/files.htm
-SPDBV/_stuff_/text/gallery.htm
-SPDBV/_stuff_/text/gromo_pl.htm
-SPDBV/_stuff_/text/gromotut.htm
-SPDBV/_stuff_/text/hew.htm
-SPDBV/_stuff_/text/index.htm
-SPDBV/_stuff_/text/pov.htm
-SPDBV/_stuff_/text/loop.htm
-SPDBV/_stuff_/text/main.htm
-SPDBV/_stuff_/text/minim.htm
-SPDBV/_stuff_/text/modeling.htm
-SPDBV/_stuff_/text/moving.htm
-SPDBV/_stuff_/text/mutation.htm
-SPDBV/_stuff_/text/phipsi.htm
-SPDBV/_stuff_/text/povscene.htm
-SPDBV/_stuff_/text/prefs.htm
-SPDBV/_stuff_/text/rama.htm
-SPDBV/_stuff_/text/refs.htm
-SPDBV/_stuff_/text/rendcomp.htm
-SPDBV/_stuff_/text/render.htm
-SPDBV/_stuff_/text/ribbon.htm
-SPDBV/_stuff_/text/select.htm
-SPDBV/_stuff_/text/selmenu.htm
-SPDBV/_stuff_/text/superpos.htm
-SPDBV/_stuff_/text/tips.htm
-SPDBV/_stuff_/text/toolmenu.htm
-SPDBV/_stuff_/text/tools.htm
-SPDBV/_stuff_/text/torsion.htm
-SPDBV/_stuff_/text/transfo.htm
-SPDBV/_stuff_/text/tutorial.htm
-SPDBV/_stuff_/text/xsymtut.htm
-SPDBV/_stuff_/readme.txt
+SPDBV/_stuff_/images/download_gr.gif
+SPDBV/_stuff_/images/hbg_m.jpg
+SPDBV/_stuff_/images/Armand003m.jpg
+SPDBV/_stuff_/images/sticks.gif
+SPDBV/_stuff_/images/FASL.gif
+SPDBV/_stuff_/images/balstick.gif
+SPDBV/_stuff_/images/1crnE2.gif
+SPDBV/_stuff_/images/references.gif
+SPDBV/_stuff_/images/model2.gif
+SPDBV/_stuff_/images/hb_inter.jpg
+SPDBV/_stuff_/images/mirror.gif
+SPDBV/_stuff_/images/edm.gif
+SPDBV/_stuff_/images/smooth3.jpg
+SPDBV/_stuff_/images/feedback_gr.gif
+SPDBV/_stuff_/images/artgallery_gr.gif
+SPDBV/_stuff_/images/index.gif
+SPDBV/_stuff_/images/userguide_gr.gif
+SPDBV/_stuff_/images/references_gr.gif
+SPDBV/_stuff_/images/logo.gif
+SPDBV/_stuff_/images/pov3labl.gif
+SPDBV/_stuff_/images/model1.gif
 SPDBV/_stuff_/smalloop.txt
-SPDBV/_stuff_/tinyloop.txt
-SPDBV/bin/spdbv.IRIX
-SPDBV/bin/spdbv.Linux
-SPDBV/bin/spdbv.sh
-SPDBV/readme.txt
-SPDBV/spdbv37b1.txt
-SPDBV/spdbv37b2.txt
+SPDBV/_stuff_/initloop.txt
+SPDBV/_stuff_/Rotolib.aa
+SPDBV/_stuff_/_loopDB_
 SPDBV/user.tar.gz
 bin/spdbv
+@dirrm SPDBV/bin
+@dirrm SPDBV/_stuff_/grmparam/CVS
 @dirrm SPDBV/_stuff_/grmparam
+@dirrm SPDBV/_stuff_/gifs
+@dirrm SPDBV/_stuff_/text
+@dirrm SPDBV/_stuff_/grmtopol/CVS
 @dirrm SPDBV/_stuff_/grmtopol
 @dirrm SPDBV/_stuff_/images
-@dirrm SPDBV/_stuff_/text
 @dirrm SPDBV/_stuff_
-@dirrm SPDBV/bin
 @dirrm SPDBV
>Release-Note:
>Audit-Trail:
>Unformatted:

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