Date: Sat, 2 Mar 2024 19:41:55 GMT From: Nuno Teixeira <eduardo@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 01064ce0bda1 - main - biology/samtools: Move man pages to share/man Message-ID: <202403021941.422JftEA035719@gitrepo.freebsd.org>
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The branch main has been updated by eduardo: URL: https://cgit.FreeBSD.org/ports/commit/?id=01064ce0bda11469f31eaabb93e6c1eefa968661 commit 01064ce0bda11469f31eaabb93e6c1eefa968661 Author: Nuno Teixeira <eduardo@FreeBSD.org> AuthorDate: 2024-03-02 19:40:58 +0000 Commit: Nuno Teixeira <eduardo@FreeBSD.org> CommitDate: 2024-03-02 19:40:58 +0000 biology/samtools: Move man pages to share/man Approved by: portmgr (blanket) --- biology/samtools/Makefile | 2 ++ biology/samtools/pkg-plist | 84 +++++++++++++++++++++++----------------------- 2 files changed, 44 insertions(+), 42 deletions(-) diff --git a/biology/samtools/Makefile b/biology/samtools/Makefile index 92da7c61eff7..85603f8c1cc8 100644 --- a/biology/samtools/Makefile +++ b/biology/samtools/Makefile @@ -1,5 +1,6 @@ PORTNAME= samtools DISTVERSION= 1.17 +PORTREVISION= 1 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -18,6 +19,7 @@ USE_GITHUB= yes USE_PERL5= test GNU_CONFIGURE= yes +GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share SHEBANG_FILES= misc/*.pl misc/plot-bamstats test/test.pl TEST_TARGET= test diff --git a/biology/samtools/pkg-plist b/biology/samtools/pkg-plist index 15e146e410cd..2ef37918b44f 100644 --- a/biology/samtools/pkg-plist +++ b/biology/samtools/pkg-plist @@ -20,45 +20,45 @@ bin/soap2sam.pl bin/wgsim bin/wgsim_eval.pl bin/zoom2sam.pl -man/man1/samtools-addreplacerg.1.gz -man/man1/samtools-ampliconclip.1.gz -man/man1/samtools-ampliconstats.1.gz -man/man1/samtools-bedcov.1.gz -man/man1/samtools-calmd.1.gz -man/man1/samtools-cat.1.gz -man/man1/samtools-collate.1.gz -man/man1/samtools-consensus.1.gz -man/man1/samtools-coverage.1.gz -man/man1/samtools-cram-size.1.gz -man/man1/samtools-depad.1.gz -man/man1/samtools-depth.1.gz -man/man1/samtools-dict.1.gz -man/man1/samtools-faidx.1.gz -man/man1/samtools-fasta.1.gz -man/man1/samtools-fastq.1.gz -man/man1/samtools-fixmate.1.gz -man/man1/samtools-flags.1.gz -man/man1/samtools-flagstat.1.gz -man/man1/samtools-fqidx.1.gz -man/man1/samtools-head.1.gz -man/man1/samtools-idxstats.1.gz -man/man1/samtools-import.1.gz -man/man1/samtools-index.1.gz -man/man1/samtools-markdup.1.gz -man/man1/samtools-merge.1.gz -man/man1/samtools-mpileup.1.gz -man/man1/samtools-phase.1.gz -man/man1/samtools-quickcheck.1.gz -man/man1/samtools-reference.1.gz -man/man1/samtools-reheader.1.gz -man/man1/samtools-reset.1.gz -man/man1/samtools-rmdup.1.gz -man/man1/samtools-samples.1.gz -man/man1/samtools-sort.1.gz -man/man1/samtools-split.1.gz -man/man1/samtools-stats.1.gz -man/man1/samtools-targetcut.1.gz -man/man1/samtools-tview.1.gz -man/man1/samtools-view.1.gz -man/man1/samtools.1.gz -man/man1/wgsim.1.gz +share/man/man1/samtools-addreplacerg.1.gz +share/man/man1/samtools-ampliconclip.1.gz +share/man/man1/samtools-ampliconstats.1.gz +share/man/man1/samtools-bedcov.1.gz +share/man/man1/samtools-calmd.1.gz +share/man/man1/samtools-cat.1.gz +share/man/man1/samtools-collate.1.gz +share/man/man1/samtools-consensus.1.gz +share/man/man1/samtools-coverage.1.gz +share/man/man1/samtools-cram-size.1.gz +share/man/man1/samtools-depad.1.gz +share/man/man1/samtools-depth.1.gz +share/man/man1/samtools-dict.1.gz +share/man/man1/samtools-faidx.1.gz +share/man/man1/samtools-fasta.1.gz +share/man/man1/samtools-fastq.1.gz +share/man/man1/samtools-fixmate.1.gz +share/man/man1/samtools-flags.1.gz +share/man/man1/samtools-flagstat.1.gz +share/man/man1/samtools-fqidx.1.gz +share/man/man1/samtools-head.1.gz +share/man/man1/samtools-idxstats.1.gz +share/man/man1/samtools-import.1.gz +share/man/man1/samtools-index.1.gz +share/man/man1/samtools-markdup.1.gz +share/man/man1/samtools-merge.1.gz +share/man/man1/samtools-mpileup.1.gz +share/man/man1/samtools-phase.1.gz +share/man/man1/samtools-quickcheck.1.gz +share/man/man1/samtools-reference.1.gz +share/man/man1/samtools-reheader.1.gz +share/man/man1/samtools-reset.1.gz +share/man/man1/samtools-rmdup.1.gz +share/man/man1/samtools-samples.1.gz +share/man/man1/samtools-sort.1.gz +share/man/man1/samtools-split.1.gz +share/man/man1/samtools-stats.1.gz +share/man/man1/samtools-targetcut.1.gz +share/man/man1/samtools-tview.1.gz +share/man/man1/samtools-view.1.gz +share/man/man1/samtools.1.gz +share/man/man1/wgsim.1.gz
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