Date: Tue, 30 Mar 2021 19:41:44 GMT From: pkg-fallout@FreeBSD.org To: yuri@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - 114amd64-default][biology/igv] Failed for igv-2.9.4 in build Message-ID: <202103301941.12UJfitq077478@beefy9.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: yuri@FreeBSD.org Ident: $FreeBSD: head/biology/igv/Makefile 569400 2021-03-28 16:41:33Z yuri $ Log URL: http://beefy9.nyi.freebsd.org/data/114amd64-default/569529/logs/igv-2.9.4.log Build URL: http://beefy9.nyi.freebsd.org/build.html?mastername=114amd64-default&build=569529 Log: =>> Building biology/igv build started at Tue Mar 30 19:40:14 UTC 2021 port directory: /usr/ports/biology/igv package name: igv-2.9.4 building for: FreeBSD 114amd64-default-job-06 11.4-RELEASE-p8 FreeBSD 11.4-RELEASE-p8 amd64 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/biology/igv/Makefile 569400 2021-03-28 16:41:33Z yuri $ Poudriere version: 3.2.8-8-gaf08dbda Host OSVERSION: 1400003 Jail OSVERSION: 1104001 Job Id: 06 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1104001 UNAME_v=FreeBSD 11.4-RELEASE-p8 UNAME_r=11.4-RELEASE-p8 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-8-gaf08dbda MASTERMNT=/usr/local/poudriere/data/.m/114amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/114amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=114amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/114amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/igv/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/igv/work HOME=/wrkdirs/usr/ports/biology/igv/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/igv/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- GRADLE_USER_HOME=/wrkdirs/usr/ports/biology/igv/work JAVA_HOME=/usr/local/openjdk11 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/igv/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/igv/work HOME=/wrkdirs/usr/ports/biology/igv/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/igv/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=11.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/igv" EXAMPLESDIR="share/examples/igv" DATADIR="share/igv" WWWDIR="www/igv" ETCDIR="etc/igv" --End PLIST_SUB-- --SUB_LIST-- JAVA_HOME=/usr/local/openjdk11 JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="11" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/igv DOCSDIR=/usr/local/share/doc/igv EXAMPLESDIR=/usr/local/share/examples/igv WWWDIR=/usr/local/www/igv ETCDIR=/usr/local/etc/igv --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 10.0.0 (git@github.com:llvm/llvm-project.git llvmorg-10.0.0-0-gd32170dbd5b) Target: x86_64-unknown-freebsd11.4 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 10.0.0 (git@github.com:llvm/llvm-project.git llvmorg-10.0.0-0-gd32170dbd5b) Target: x86_64-unknown-freebsd11.4 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 10.0.0 (git@github.com:llvm/llvm-project.git llvmorg-10.0.0-0-gd32170dbd5b) Target: x86_64-unknown-freebsd11.4 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=11.4-RELEASE-p8 OSREL=11.4 OSVERSION=1104001 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License MIT accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> igv-2.9.4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.16.3.txz [114amd64-default-job-06] Installing pkg-1.16.3... [114amd64-default-job-06] Extracting pkg-1.16.3: .......... done ===> igv-2.9.4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of igv-2.9.4 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License MIT accepted by the user => tools.png doesn't seem to exist in /portdistfiles/igv-2.9.4. => Attempting to fetch http://software.broadinstitute.org/software/igv/sites/cancerinformatics.org.igv/files/images/tools.png tools.png 5139 B 76 MBps 00s => igv-2.9.4-deps.tar.gz doesn't seem to exist in /portdistfiles/igv-2.9.4. => Attempting to fetch http://distcache.FreeBSD.org/local-distfiles/yuri/igv-2.9.4-deps.tar.gz igv-2.9.4-deps.tar.gz 51 MB 90 MBps 01s => igvteam-igv-v2.9.4_GH0.tar.gz doesn't seem to exist in /portdistfiles/igv-2.9.4. => Attempting to fetch https://codeload.github.com/igvteam/igv/tar.gz/v2.9.4?dummy=/igvteam-igv-v2.9.4_GH0.tar.gz fetch: https://codeload.github.com/igvteam/igv/tar.gz/v2.9.4?dummy=/igvteam-igv-v2.9.4_GH0.tar.gz: size unknown fetch: https://codeload.github.com/igvteam/igv/tar.gz/v2.9.4?dummy=/igvteam-igv-v2.9.4_GH0.tar.gz: size of remote file is not known igvteam-igv-v2.9.4_GH0.tar.gz 116 MB 10 MBps 11s ===> Fetching all distfiles required by igv-2.9.4 for building =========================================================================== =======================<phase: checksum >============================ ===> License MIT accepted by the user ===> Fetching all distfiles required by igv-2.9.4 for building => SHA256 Checksum OK for igv-2.9.4/tools.png. => SHA256 Checksum OK for igv-2.9.4/igv-2.9.4-deps.tar.gz. => SHA256 Checksum OK for igv-2.9.4/igvteam-igv-v2.9.4_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License MIT accepted by the user ===> Fetching all distfiles required by igv-2.9.4 for building ===> Extracting for igv-2.9.4 => SHA256 Checksum OK for igv-2.9.4/tools.png. => SHA256 Checksum OK for igv-2.9.4/igv-2.9.4-deps.tar.gz. => SHA256 Checksum OK for igv-2.9.4/igvteam-igv-v2.9.4_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for igv-2.9.4 =========================================================================== =======================<phase: build-depends >============================ ===> igv-2.9.4 depends on package: openjfx14>0 - not found ===> Installing existing package /packages/All/openjfx14-14.0.2.1+1_1.txz [114amd64-default-job-06] Installing openjfx14-14.0.2.1+1_1... [114amd64-default-job-06] `-- Installing alsa-lib-1.1.2_2... [114amd64-default-job-06] `-- Extracting alsa-lib-1.1.2_2: .......... done <snip> More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===== Message from libxkbcommon-1.1.0: -- If arrow keys don't work under X11 switch to legacy rules e.g., For sh/bash/ksh/zsh run and (optionally) add into ~/.profile: export XKB_DEFAULT_RULES=xorg For csh/tcsh run and (optionally) add into ~/.login: setenv XKB_DEFAULT_RULES xorg ===== Message from openjdk11-11.0.10+9.1_1: -- This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and procfs(5) mounted on /proc. If you have not done it yet, please do the following: mount -t fdescfs fdesc /dev/fd mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: fdesc /dev/fd fdescfs rw 0 0 proc /proc procfs rw 0 0 ===> igv-2.9.4 depends on package: openjfx14>0 - found ===> Returning to build of igv-2.9.4 ===> igv-2.9.4 depends on executable: gradle - not found ===> Installing existing package /packages/All/gradle-6.8.3.txz [114amd64-default-job-06] Installing gradle-6.8.3... [114amd64-default-job-06] `-- Installing openjdk8-8.282.08.1... [114amd64-default-job-06] | `-- Installing java-zoneinfo-2021.a... [114amd64-default-job-06] | `-- Extracting java-zoneinfo-2021.a: .......... done [114amd64-default-job-06] | `-- Installing libinotify-20180201_2... [114amd64-default-job-06] | `-- Extracting libinotify-20180201_2: .......... done [114amd64-default-job-06] `-- Extracting openjdk8-8.282.08.1: .......... done [114amd64-default-job-06] Extracting gradle-6.8.3: .......... done ===== Message from libinotify-20180201_2: -- Libinotify functionality on FreeBSD is missing support for - detecting a file being moved into or out of a directory within the same filesystem - certain modifications to a symbolic link (rather than the file it points to.) in addition to the known limitations on all platforms using kqueue(2) where various open and close notifications are unimplemented. This means the following regression tests will fail: Directory notifications: IN_MOVED_FROM IN_MOVED_TO Open/close notifications: IN_OPEN IN_CLOSE_NOWRITE IN_CLOSE_WRITE Symbolic Link notifications: IN_DONT_FOLLOW IN_ATTRIB IN_MOVE_SELF IN_DELETE_SELF Kernel patches to address the missing directory and symbolic link notifications are available from: https://github.com/libinotify-kqueue/libinotify-kqueue/tree/master/patches You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. ===== Message from openjdk8-8.282.08.1: -- This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and procfs(5) mounted on /proc. If you have not done it yet, please do the following: mount -t fdescfs fdesc /dev/fd mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: fdesc /dev/fd fdescfs rw 0 0 proc /proc procfs rw 0 0 ===> igv-2.9.4 depends on executable: gradle - found ===> Returning to build of igv-2.9.4 ===> igv-2.9.4 depends on file: /usr/local/openjdk11/bin/java - found =========================================================================== =======================<phase: lib-depends >============================ ===> igv-2.9.4 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) =========================================================================== =======================<phase: configure >============================ ===> Configuring for igv-2.9.4 =========================================================================== =======================<phase: build >============================ ===> Building for igv-2.9.4 cd /wrkdirs/usr/ports/biology/igv/work/igv-2.9.4 && /usr/bin/env GRADLE_USER_HOME=/wrkdirs/usr/ports/biology/igv/work JAVA_HOME=/usr/local/openjdk11 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/igv/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/igv/work HOME=/wrkdirs/usr/ports/biology/igv/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/igv/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" gradle --gradle-u ser-home /wrkdirs/usr/ports/biology/igv/work/gradle-igv --project-cache-dir /wrkdirs/usr/ports/biology/igv/work/gradle-igv --offline --build-cache --stacktrace createDist Starting a Gradle Daemon, 1 incompatible and 1 stopped Daemons could not be reused, use --status for details The message received from the daemon indicates that the daemon has disappeared. Build request sent: Build{id=21a846d6-fc6d-43d2-b69f-1ac70608875c, currentDir=/wrkdirs/usr/ports/biology/igv/work/igv-2.9.4} Attempting to read last messages from the daemon log... Daemon pid: 77196 log file: /wrkdirs/usr/ports/biology/igv/work/gradle-igv/daemon/6.8.3/daemon-77196.out.log ----- Last 20 lines from daemon log file - daemon-77196.out.log ----- 2021-03-30T19:41:39.171+0000 [ERROR] [org.gradle.launcher.daemon.server.DaemonStateCoordinator] Command execution: started DaemonCommandExecution[command = Build{id=21a846d6-fc6d-43d2-b69f-1ac70608875c, currentDir=/wrkdirs/usr/ports/biology/igv/work/igv-2.9.4}, connection = DefaultDaemonConnection: socket connection from /127.0.0.1:36498 to /127.0.0.1:12107] after 0.0 minutes of idle 2021-03-30T19:41:39.171+0000 [INFO] [org.gradle.launcher.daemon.server.DaemonRegistryUpdater] Marking the daemon as busy, address: [4e25be91-b44c-44f1-9de4-5effca8ac2ba port:36498, addresses:[localhost/127.0.0.1]] 2021-03-30T19:41:39.171+0000 [DEBUG] [org.gradle.launcher.daemon.registry.PersistentDaemonRegistry] Marking busy by address: [4e25be91-b44c-44f1-9de4-5effca8ac2ba port:36498, addresses:[localhost/127.0.0.1]] 2021-03-30T19:41:39.172+0000 [DEBUG] [org.gradle.cache.internal.DefaultFileLockManager] Waiting to acquire exclusive lock on daemon addresses registry. 2021-03-30T19:41:39.173+0000 [DEBUG] [org.gradle.cache.internal.DefaultFileLockManager] Lock acquired on daemon addresses registry. 2021-03-30T19:41:39.173+0000 [DEBUG] [org.gradle.cache.internal.DefaultFileLockManager] Releasing lock on daemon addresses registry. 2021-03-30T19:41:39.174+0000 [DEBUG] [org.gradle.launcher.daemon.server.DaemonStateCoordinator] resetting idle timer 2021-03-30T19:41:39.174+0000 [DEBUG] [org.gradle.launcher.daemon.server.DaemonStateCoordinator] daemon is running. Sleeping until state changes. 2021-03-30T19:41:39.175+0000 [INFO] [org.gradle.launcher.daemon.server.exec.StartBuildOrRespondWithBusy] Daemon is about to start building Build{id=21a846d6-fc6d-43d2-b69f-1ac70608875c, currentDir=/wrkdirs/usr/ports/biology/igv/work/igv-2.9.4}. Dispatching build started information... 2021-03-30T19:41:39.176+0000 [DEBUG] [org.gradle.launcher.daemon.server.SynchronizedDispatchConnection] thread 29: dispatching org.gradle.launcher.daemon.protocol.BuildStarted@394d199e 2021-03-30T19:41:39.179+0000 [DEBUG] [org.gradle.launcher.daemon.server.exec.EstablishBuildEnvironment] Configuring env variables: [P_PORTS_FEATURES, PATH, MASTERMNT, CXX, CPP, META_MODE, MASTERNAME, BSD_INSTALL_PROGRAM, SAVED_TERM, LDFLAGS, UNAME_r, NO_LINT, STATUS, SCRIPTPREFIX, UNAME_v, BSD_INSTALL_MAN, POUDRIERE_BUILD_TYPE, MAIL, OSREL, NO_DEPENDS, PWD, GID, SHELL, CPPFLAGS, _OSRELEASE, BSD_INSTALL_LIB, OLDPWD, LIBS, TMPDIR, UID, OSVERSION, LC_ALL, PREFIX, SCRIPTPATH, HAVE_COMPAT_IA32_KERN, MK_DEBUG_FILES, MANPREFIX, BLOCKSIZE, MAKEFLAGS, JAVA_HOME, ARCH, LANG, OPSYS, LOCALBASE, GRADLE_USER_HOME, CFLAGS, MK_KERNEL_SYMBOLS, .MAKE.LEVEL.ENV, BSD_INSTALL_SCRIPT, CC, XDG_DATA_HOME, POUDRIERE_VERSION, BSD_INSTALL_DATA, USER, XDG_CONFIG_HOME, NO_PIE, MAKELEVEL, LIBEXECPREFIX, POUDRIEREPATH, PACKAGE_BUILDING, HOME, CXXFLAGS] 2021-03-30T19:41:39.181+0000 [DEBUG] [org.gradle.launcher.daemon.server.SynchronizedDispatchConnection] thread 27: received class org.gradle.launcher.daemon.protocol.CloseInput 2021-03-30T19:41:39.182+0000 [DEBUG] [org.gradle.launcher.daemon.server.DefaultDaemonConnection] thread 27: Received IO message from client: org.gradle.launcher.daemon.protocol.CloseInput@5b83015d 2021-03-30T19:41:39.188+0000 [DEBUG] [org.gradle.launcher.daemon.server.exec.LogToClient] About to start relaying all logs to the client via the connection. 2021-03-30T19:41:39.188+0000 [INFO] [org.gradle.launcher.daemon.server.exec.LogToClient] The client will now receive all logging from the daemon (pid: 77196). The daemon log file: /wrkdirs/usr/ports/biology/igv/work/gradle-igv/daemon/6.8.3/daemon-77196.out.log 2021-03-30T19:41:39.191+0000 [INFO] [org.gradle.launcher.daemon.server.exec.LogAndCheckHealth] Starting build in new daemon [memory: 512 MiB] 2021-03-30T19:41:39.193+0000 [INFO] [org.gradle.launcher.daemon.server.exec.ForwardClientInput] Closing daemon's stdin at end of input. 2021-03-30T19:41:39.193+0000 [INFO] [org.gradle.launcher.daemon.server.exec.ForwardClientInput] The daemon will no longer process any standard input. 2021-03-30T19:41:39.199+0000 [DEBUG] [org.gradle.launcher.daemon.server.exec.ExecuteBuild] The daemon has started executing the build. 2021-03-30T19:41:39.199+0000 [DEBUG] [org.gradle.launcher.daemon.server.exec.ExecuteBuild] Executing build with daemon context: DefaultDaemonContext[uid=fb6014b6-131a-418f-9dcd-ce1a9f9620a8,javaHome=/usr/local/openjdk11,daemonRegistryDir=/wrkdirs/usr/ports/biology/igv/work/gradle-igv/daemon,pid=77196,idleTimeout=10800000,priority=NORMAL,daemonOpts=--add-opens,java.base/java.util=ALL-UNNAMED,--add-opens,java.base/java.lang=ALL-UNNAMED,--add-opens,java.base/java.lang.invoke=ALL-UNNAMED,--add-opens,java.prefs/java.util.prefs=ALL-UNNAMED,-XX:MaxMetaspaceSize=256m,-XX:+HeapDumpOnOutOfMemoryError,-Xms256m,-Xmx512m,-Dfile.encoding=US-ASCII,-Duser.country=US,-Duser.language=en,-Duser.variant] ----- End of the daemon log ----- FAILURE: Build failed with an exception. * What went wrong: Gradle build daemon disappeared unexpectedly (it may have been killed or may have crashed) * Try: Run with --info or --debug option to get more log output. Run with --scan to get full insights. * Exception is: org.gradle.launcher.daemon.client.DaemonDisappearedException: Gradle build daemon disappeared unexpectedly (it may have been killed or may have crashed) at org.gradle.launcher.daemon.client.DaemonClient.handleDaemonDisappearance(DaemonClient.java:249) at org.gradle.launcher.daemon.client.DaemonClient.monitorBuild(DaemonClient.java:222) at org.gradle.launcher.daemon.client.DaemonClient.executeBuild(DaemonClient.java:184) at org.gradle.launcher.daemon.client.DaemonClient.execute(DaemonClient.java:147) at org.gradle.launcher.daemon.client.DaemonClient.execute(DaemonClient.java:98) at org.gradle.launcher.cli.RunBuildAction.run(RunBuildAction.java:57) at org.gradle.internal.Actions$RunnableActionAdapter.execute(Actions.java:212) at org.gradle.launcher.cli.DefaultCommandLineActionFactory$ParseAndBuildAction.execute(DefaultCommandLineActionFactory.java:275) at org.gradle.launcher.cli.DefaultCommandLineActionFactory$ParseAndBuildAction.execute(DefaultCommandLineActionFactory.java:247) at org.gradle.launcher.cli.DebugLoggerWarningAction.execute(DebugLoggerWarningAction.java:82) at org.gradle.launcher.cli.DebugLoggerWarningAction.execute(DebugLoggerWarningAction.java:30) at org.gradle.launcher.cli.WelcomeMessageAction.execute(WelcomeMessageAction.java:92) at org.gradle.launcher.cli.WelcomeMessageAction.execute(WelcomeMessageAction.java:38) at org.gradle.launcher.cli.NativeServicesInitializingAction.execute(NativeServicesInitializingAction.java:44) at org.gradle.launcher.cli.NativeServicesInitializingAction.execute(NativeServicesInitializingAction.java:26) at org.gradle.launcher.cli.ExceptionReportingAction.execute(ExceptionReportingAction.java:41) at org.gradle.launcher.cli.ExceptionReportingAction.execute(ExceptionReportingAction.java:26) at org.gradle.launcher.cli.DefaultCommandLineActionFactory$WithLogging.execute(DefaultCommandLineActionFactory.java:240) at org.gradle.launcher.Main.doAction(Main.java:35) at org.gradle.launcher.bootstrap.EntryPoint.run(EntryPoint.java:50) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.launcher.bootstrap.ProcessBootstrap.runNoExit(ProcessBootstrap.java:60) at org.gradle.launcher.bootstrap.ProcessBootstrap.run(ProcessBootstrap.java:37) at org.gradle.launcher.GradleMain.main(GradleMain.java:31) * Get more help at https://help.gradle.org *** Error code 1 Stop. make: stopped in /usr/ports/biology/igv
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