Date: Wed, 10 Apr 2013 22:38:08 GMT From: Jason Bacon <jwbacon@tds.net> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/177771: maintainer update: math/dolfin-devel Message-ID: <201304102238.r3AMc8Wl044473@red.freebsd.org> Resent-Message-ID: <201304102240.r3AMe0O9040130@freefall.freebsd.org>
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>Number: 177771
>Category: ports
>Synopsis: maintainer update: math/dolfin-devel
>Confidential: no
>Severity: non-critical
>Priority: low
>Responsible: freebsd-ports-bugs
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: change-request
>Submitter-Id: current-users
>Arrival-Date: Wed Apr 10 22:40:00 UTC 2013
>Closed-Date:
>Last-Modified:
>Originator: Jason Bacon
>Release: 8.3-RELEASE
>Organization:
Acadix Consulting, LLC
>Environment:
FreeBSD sculpin.jbacon.dyndns.org 8.3-RELEASE FreeBSD 8.3-RELEASE #0: Mon Apr 9 21:23:18 UTC 2012 root@mason.cse.buffalo.edu:/usr/obj/usr/src/sys/GENERIC amd64
>Description:
DOLFIN is the C++/Python interface of FEniCS, providing a consistent PSE
(Problem Solving Environment) for ordinary and partial differential equations.
This port builds a serial version. An openmpi slave port is intended, pending updates to cad/scotch, math/parmetis, and math/petsc, and the addition of a few more dependent ports.
>How-To-Repeat:
>Fix:
Patch attached with submission follows:
# This is a shell archive. Save it in a file, remove anything before
# this line, and then unpack it by entering "sh file". Note, it may
# create directories; files and directories will be owned by you and
# have default permissions.
#
# This archive contains:
#
# dolfin-devel
# dolfin-devel/files
# dolfin-devel/files/64-bit-petsc
# dolfin-devel/files/64-bit-petsc/patch-dolfin-graph-MatrixRenumbering.cpp
# dolfin-devel/files/64-bit-petsc/patch-dolfin-la-PETScBaseMatrix.cpp
# dolfin-devel/files/64-bit-petsc/patch-dolfin-la-PETScKrylovMatrix.cpp
# dolfin-devel/files/64-bit-petsc/patch-dolfin-la-PETScKrylovSolver.cpp
# dolfin-devel/files/64-bit-petsc/patch-dolfin-la-PETScMatrix.cpp
# dolfin-devel/files/64-bit-petsc/patch-dolfin-la-PETScPreconditioner.cpp
# dolfin-devel/files/64-bit-petsc/patch-dolfin-la-PETScVector.cpp
# dolfin-devel/files/patch-CMakeLists.txt
# dolfin-devel/files/patch-cmake-modules-FindPETSc.cmake
# dolfin-devel/distinfo
# dolfin-devel/Makefile
# dolfin-devel/pkg-descr
# dolfin-devel/pkg-plist
# dolfin-devel/todo
#
echo c - dolfin-devel
mkdir -p dolfin-devel > /dev/null 2>&1
echo c - dolfin-devel/files
mkdir -p dolfin-devel/files > /dev/null 2>&1
echo c - dolfin-devel/files/64-bit-petsc
mkdir -p dolfin-devel/files/64-bit-petsc > /dev/null 2>&1
echo x - dolfin-devel/files/64-bit-petsc/patch-dolfin-graph-MatrixRenumbering.cpp
sed 's/^X//' >dolfin-devel/files/64-bit-petsc/patch-dolfin-graph-MatrixRenumbering.cpp << 'c7e72a7ebb4497eeb2863cb73ec4a8bd'
X--- dolfin/graph/MatrixRenumbering.cpp.orig 2011-12-07 15:21:22.000000000 -0600
X+++ dolfin/graph/MatrixRenumbering.cpp 2012-05-22 16:06:42.000000000 -0500
X@@ -22,6 +22,7 @@
X
X #ifdef HAS_TRILINOS
X
X+#include <iostream>
X #include <boost/scoped_array.hpp>
X #include <zoltan_cpp.h>
X
c7e72a7ebb4497eeb2863cb73ec4a8bd
echo x - dolfin-devel/files/64-bit-petsc/patch-dolfin-la-PETScBaseMatrix.cpp
sed 's/^X//' >dolfin-devel/files/64-bit-petsc/patch-dolfin-la-PETScBaseMatrix.cpp << '0cd01897f1bebaaf78cf35a8eaaa72f3'
X--- dolfin/la/PETScBaseMatrix.cpp.orig 2011-12-07 15:21:22.000000000 -0600
X+++ dolfin/la/PETScBaseMatrix.cpp 2012-05-22 16:16:00.000000000 -0500
X@@ -39,7 +39,7 @@
X
X if (A)
X {
X- int m(0), n(0);
X+ PetscInt m(0), n(0);
X MatGetSize(*A, &m, &n);
X if (dim == 0)
X return m;
X@@ -62,7 +62,7 @@
X
X if (A)
X {
X- int m(0), n(0);
X+ PetscInt m(0), n(0);
X MatGetOwnershipRange(*A, &m, &n);
X return std::make_pair(m, n);
X }
0cd01897f1bebaaf78cf35a8eaaa72f3
echo x - dolfin-devel/files/64-bit-petsc/patch-dolfin-la-PETScKrylovMatrix.cpp
sed 's/^X//' >dolfin-devel/files/64-bit-petsc/patch-dolfin-la-PETScKrylovMatrix.cpp << '5d432d86b6f8566639b0a632f3bf27fc'
X--- dolfin/la/PETScKrylovMatrix.cpp.orig 2012-05-22 16:16:49.000000000 -0500
X+++ dolfin/la/PETScKrylovMatrix.cpp 2012-05-22 16:17:14.000000000 -0500
X@@ -79,7 +79,7 @@
X if (A)
X {
X // Get size and local size of existing matrix
X- int _m(0), _n(0), _m_local(0), _n_local(0);
X+ PetscInt _m(0), _n(0), _m_local(0), _n_local(0);
X MatGetSize(*A, &_m, &_m);
X MatGetLocalSize(*A, &_m_local, &_n_local);
X
5d432d86b6f8566639b0a632f3bf27fc
echo x - dolfin-devel/files/64-bit-petsc/patch-dolfin-la-PETScKrylovSolver.cpp
sed 's/^X//' >dolfin-devel/files/64-bit-petsc/patch-dolfin-la-PETScKrylovSolver.cpp << 'e6a6d64391b7a3db449297be7c9f8195'
X--- dolfin/la/PETScKrylovSolver.cpp.orig 2012-05-22 16:17:50.000000000 -0500
X+++ dolfin/la/PETScKrylovSolver.cpp 2012-05-22 16:24:30.000000000 -0500
X@@ -253,7 +253,7 @@
X KSPSolve(*_ksp, *b.vec(), *x.vec());
X
X // Get the number of iterations
X- int num_iterations = 0;
X+ PetscInt num_iterations = 0;
X KSPGetIterationNumber(*_ksp, &num_iterations);
X
X // Check if the solution converged and print error/warning if not converged
X@@ -369,7 +369,7 @@
X void PETScKrylovSolver::set_petsc_options()
X {
X // GMRES restart parameter
X- KSPGMRESSetRestart(*_ksp, parameters("gmres")["restart"]);
X+ KSPGMRESSetRestart(*_ksp, (int)parameters("gmres")["restart"]);
X
X // Non-zero initial guess
X const bool nonzero_guess = parameters["nonzero_initial_guess"];
X@@ -383,10 +383,10 @@
X
X // Set tolerances
X KSPSetTolerances(*_ksp,
X- parameters["relative_tolerance"],
X- parameters["absolute_tolerance"],
X- parameters["divergence_limit"],
X- parameters["maximum_iterations"]);
X+ (int)parameters["relative_tolerance"],
X+ (int)parameters["absolute_tolerance"],
X+ (int)parameters["divergence_limit"],
X+ (int)parameters["maximum_iterations"]);
X }
X //-----------------------------------------------------------------------------
X void PETScKrylovSolver::write_report(int num_iterations,
e6a6d64391b7a3db449297be7c9f8195
echo x - dolfin-devel/files/64-bit-petsc/patch-dolfin-la-PETScMatrix.cpp
sed 's/^X//' >dolfin-devel/files/64-bit-petsc/patch-dolfin-la-PETScMatrix.cpp << '86b40f1ebf662708f8d98cadcc1ecfaf'
X--- dolfin/la/PETScMatrix.cpp.orig 2012-05-22 16:25:16.000000000 -0500
X+++ dolfin/la/PETScMatrix.cpp 2012-05-22 16:31:56.000000000 -0500
X@@ -164,7 +164,7 @@
X MatSetType(*A, MATSEQAIJ);
X
X // Allocate space (using data from sparsity pattern)
X- MatSeqAIJSetPreallocation(*A, PETSC_NULL, reinterpret_cast<int*>(&num_nonzeros[0]));
X+ MatSeqAIJSetPreallocation(*A, PETSC_NULL, reinterpret_cast<PetscInt *>(&num_nonzeros[0]));
X
X /*
X // Set column indices
X@@ -216,8 +216,8 @@
X
X // Allocate space (using data from sparsity pattern)
X MatMPIAIJSetPreallocation(*A,
X- PETSC_NULL, reinterpret_cast<int*>(&num_nonzeros_diagonal[0]),
X- PETSC_NULL, reinterpret_cast<int*>(&num_nonzeros_off_diagonal[0]));
X+ PETSC_NULL, reinterpret_cast<PetscInt *>(&num_nonzeros_diagonal[0]),
X+ PETSC_NULL, reinterpret_cast<PetscInt *>(&num_nonzeros_off_diagonal[0]));
X
X // Set some options
X #if PETSC_VERSION_MAJOR == 3 && PETSC_VERSION_MINOR >= 1
X@@ -252,8 +252,8 @@
X
X // Get matrix entries (must be on this process)
X MatGetValues(*A,
X- static_cast<int>(m), reinterpret_cast<const int*>(rows),
X- static_cast<int>(n), reinterpret_cast<const int*>(cols),
X+ static_cast<int>(m), reinterpret_cast<const PetscInt *>(rows),
X+ static_cast<int>(n), reinterpret_cast<const PetscInt *>(cols),
X block);
X }
X //-----------------------------------------------------------------------------
X@@ -262,8 +262,8 @@
X {
X dolfin_assert(A);
X MatSetValues(*A,
X- static_cast<int>(m), reinterpret_cast<const int*>(rows),
X- static_cast<int>(n), reinterpret_cast<const int*>(cols),
X+ static_cast<int>(m), reinterpret_cast<const PetscInt *>(rows),
X+ static_cast<int>(n), reinterpret_cast<const PetscInt *>(cols),
X block, INSERT_VALUES);
X }
X //-----------------------------------------------------------------------------
X@@ -272,8 +272,8 @@
X {
X dolfin_assert(A);
X MatSetValues(*A,
X- static_cast<int>(m), reinterpret_cast<const int*>(rows),
X- static_cast<int>(n), reinterpret_cast<const int*>(cols),
X+ static_cast<int>(m), reinterpret_cast<const PetscInt *>(rows),
X+ static_cast<int>(n), reinterpret_cast<const PetscInt *>(cols),
X block, ADD_VALUES);
X }
X //-----------------------------------------------------------------------------
X@@ -294,9 +294,9 @@
X {
X dolfin_assert(A);
X
X- const int *cols = 0;
X+ const PetscInt *cols = 0;
X const double *vals = 0;
X- int ncols = 0;
X+ PetscInt ncols = 0;
X MatGetRow(*A, row, &ncols, &cols, &vals);
X
X // Assign values to std::vectors
X@@ -341,7 +341,7 @@
X MatZeroRowsIS(*A, is, null, NULL, NULL);
X #else
X ISCreateGeneral(PETSC_COMM_SELF, static_cast<int>(m),
X- reinterpret_cast<const int*>(rows), &is);
X+ reinterpret_cast<const PetscInt*>(rows), &is);
X MatZeroRowsIS(*A, is, null);
X #endif
X
X@@ -365,7 +365,7 @@
X MatZeroRowsIS(*A, is, one, NULL, NULL);
X #else
X ISCreateGeneral(PETSC_COMM_SELF, static_cast<int>(m),
X- reinterpret_cast<const int*>(rows), &is);
X+ reinterpret_cast<const PetscInt*>(rows), &is);
X MatZeroRowsIS(*A, is, one);
X #endif
X
86b40f1ebf662708f8d98cadcc1ecfaf
echo x - dolfin-devel/files/64-bit-petsc/patch-dolfin-la-PETScPreconditioner.cpp
sed 's/^X//' >dolfin-devel/files/64-bit-petsc/patch-dolfin-la-PETScPreconditioner.cpp << 'b728cb021e754dbc3cb674f9322c661a'
X--- dolfin/la/PETScPreconditioner.cpp.orig 2012-05-22 16:35:06.000000000 -0500
X+++ dolfin/la/PETScPreconditioner.cpp 2012-05-22 16:41:34.000000000 -0500
X@@ -175,14 +175,14 @@
X {
X // Select method and overlap
X PCSetType(pc, _methods.find("additive_schwarz")->second);
X- PCASMSetOverlap(pc, parameters("schwarz")["overlap"]);
X+ PCASMSetOverlap(pc, (int)parameters("schwarz")["overlap"]);
X
X // Make sure the data structures have been constructed
X KSPSetUp(*solver.ksp());
X
X // Get sub-solvers and set sub-solver parameters
X KSP* sub_ksps;
X- int num_local(0), first(0);
X+ PetscInt num_local(0), first(0);
X PCASMGetSubKSP(pc, &num_local, &first, &sub_ksps);
X for (int i = 0; i < num_local; ++i)
X {
X@@ -194,7 +194,7 @@
X //PCFactorSetMatSolverPackage(sub_pc, MAT_SOLVER_UMFPACK);
X //PCSetType(sub_pc, PCILU);
X //KSPSetType(sub_ksps[i], KSPGMRES);
X- PCFactorSetLevels(sub_pc, parameters("ilu")["fill_level"]);
X+ PCFactorSetLevels(sub_pc, (int)parameters("ilu")["fill_level"]);
X //PCFactorSetLevels(sub_pc, 4);
X //PCView(sub_pc, PETSC_VIEWER_STDOUT_WORLD);
X }
X@@ -215,7 +215,7 @@
X #endif
X }
X
X- PCFactorSetLevels(pc, parameters("ilu")["fill_level"]);
X+ PCFactorSetLevels(pc, (int)parameters("ilu")["fill_level"]);
X
X // Make sure options are set
X PCSetFromOptions(pc);
b728cb021e754dbc3cb674f9322c661a
echo x - dolfin-devel/files/64-bit-petsc/patch-dolfin-la-PETScVector.cpp
sed 's/^X//' >dolfin-devel/files/64-bit-petsc/patch-dolfin-la-PETScVector.cpp << 'b96b2ba29a8978a4751f545c86b2be1d'
X--- dolfin/la/PETScVector.cpp.orig 2012-05-22 16:42:14.000000000 -0500
X+++ dolfin/la/PETScVector.cpp 2012-05-22 16:55:33.000000000 -0500
X@@ -223,7 +223,7 @@
X if (local_size == 0)
X return;
X
X- std::vector<int> rows(local_size);
X+ std::vector<PetscInt> rows(local_size);
X for (uint i = 0; i < local_size; ++i)
X rows[i] = i + n0;
X
X@@ -246,7 +246,7 @@
X return;
X
X // Build array of global indices
X- std::vector<int> rows(local_size);
X+ std::vector<PetscInt> rows(local_size);
X for (uint i = 0; i < local_size; ++i)
X rows[i] = i + n0;
X
X@@ -269,7 +269,7 @@
X return;
X
X // Build array of global indices
X- std::vector<int> rows(local_size);
X+ std::vector<PetscInt> rows(local_size);
X for (uint i = 0; i < local_size; ++i)
X rows[i] = i + n0;
X
X@@ -279,8 +279,8 @@
X void PETScVector::get_local(double* block, uint m, const uint* rows) const
X {
X dolfin_assert(x);
X- int _m = static_cast<int>(m);
X- const int* _rows = reinterpret_cast<const int*>(rows);
X+ PetscInt _m = static_cast<PetscInt>(m);
X+ const PetscInt* _rows = reinterpret_cast<const PetscInt*>(rows);
X
X // Handle case that m = 0 (VecGetValues is collective -> must be called be
X // all processes)
X@@ -306,7 +306,7 @@
X const uint local_size = n1 - n0;
X
X // Build list of rows, and get from ghosted vector
X- std::vector<int> local_rows(m);
X+ std::vector<PetscInt> local_rows(m);
X for (uint i = 0; i < m; ++i)
X {
X if (rows[i] >= n0 && rows[i] < n1)
X@@ -331,7 +331,7 @@
X if (m == 0)
X return;
X
X- VecSetValues(*x, m, reinterpret_cast<const int*>(rows), block, INSERT_VALUES);
X+ VecSetValues(*x, m, reinterpret_cast<const PetscInt*>(rows), block, INSERT_VALUES);
X }
X //-----------------------------------------------------------------------------
X void PETScVector::add(const double* block, uint m, const uint* rows)
X@@ -341,7 +341,7 @@
X if (m == 0)
X return;
X
X- VecSetValues(*x, m, reinterpret_cast<const int*>(rows), block, ADD_VALUES);
X+ VecSetValues(*x, m, reinterpret_cast<const PetscInt*>(rows), block, ADD_VALUES);
X }
X //-----------------------------------------------------------------------------
X void PETScVector::apply(std::string mode)
X@@ -360,7 +360,7 @@
X //-----------------------------------------------------------------------------
X dolfin::uint PETScVector::size() const
X {
X- int n = 0;
X+ PetscInt n = 0;
X if (x)
X VecGetSize(*x, &n);
X return static_cast<uint>(n);
X@@ -368,7 +368,7 @@
X //-----------------------------------------------------------------------------
X dolfin::uint PETScVector::local_size() const
X {
X- int n = 0;
X+ PetscInt n = 0;
X if (x)
X VecGetLocalSize(*x, &n);
X return static_cast<uint>(n);
X@@ -377,7 +377,10 @@
X std::pair<dolfin::uint, dolfin::uint> PETScVector::local_range() const
X {
X std::pair<uint, uint> range;
X- VecGetOwnershipRange(*x, (int*) &range.first, (int*) &range.second);
X+ PetscInt tempFirst = range.first, tempSecond = range.second;
X+ VecGetOwnershipRange(*x, &tempFirst, &tempSecond);
X+ range.first = tempFirst;
X+ range.second = tempSecond;
X dolfin_assert(range.first <= range.second);
X return range;
X }
X@@ -542,7 +545,7 @@
X dolfin_assert(x);
X
X double value = 0.0;
X- int position = 0;
X+ PetscInt position = 0;
X VecMin(*x, &position, &value);
X return value;
X }
X@@ -552,7 +555,7 @@
X dolfin_assert(x);
X
X double value = 0.0;
X- int position = 0;
X+ PetscInt position = 0;
X VecMax(*x, &position, &value);
X return value;
X }
X@@ -661,10 +664,10 @@
X }
X
X // Prepare data for index sets (global indices)
X- const int* global_indices = reinterpret_cast<const int*>(indices.data().get());
X+ const PetscInt* global_indices = reinterpret_cast<const PetscInt*>(indices.data().get());
X
X // Prepare data for index sets (local indices)
X- const int n = indices.size();
X+ const PetscInt n = indices.size();
X
X // PETSc will bail out if it receives a NULL pointer even though m == 0.
X // Can't return from function since function calls are collective.
X@@ -769,9 +772,9 @@
X // Clear ghost indices map
X ghost_global_to_local.clear();
X
X- const int* _ghost_indices = 0;
X+ const PetscInt* _ghost_indices = 0;
X if (ghost_indices.size() > 0)
X- _ghost_indices = reinterpret_cast<const int*>(&ghost_indices[0]);
X+ _ghost_indices = reinterpret_cast<const PetscInt*>(&ghost_indices[0]);
X
X VecCreateGhost(PETSC_COMM_WORLD, local_size, PETSC_DECIDE,
X ghost_indices.size(), _ghost_indices, x.get());
b96b2ba29a8978a4751f545c86b2be1d
echo x - dolfin-devel/files/patch-CMakeLists.txt
sed 's/^X//' >dolfin-devel/files/patch-CMakeLists.txt << '1650968953bac9eb96d7f73165606d5b'
X--- CMakeLists.txt.orig 2011-12-07 15:21:22.000000000 -0600
X+++ CMakeLists.txt 2012-05-22 18:00:11.000000000 -0500
X@@ -329,7 +329,7 @@
X
X # Check for Sphinx
X if (DOLFIN_ENABLE_DOCS AND PYTHON_FOUND)
X- find_package(Sphinx 1.0.7)
X+ find_package(Sphinx 1.0.5)
X endif()
X
X #------------------------------------------------------------------------------
1650968953bac9eb96d7f73165606d5b
echo x - dolfin-devel/files/patch-cmake-modules-FindPETSc.cmake
sed 's/^X//' >dolfin-devel/files/patch-cmake-modules-FindPETSc.cmake << '9ca77add4c7e8ba4ef0a7f1a94cc2d87'
X--- cmake/modules/FindPETSc.cmake.orig 2011-12-07 15:21:22.000000000 -0600
X+++ cmake/modules/FindPETSc.cmake 2012-05-22 18:02:08.000000000 -0500
X@@ -116,7 +116,7 @@
X set(PETSC_INCLUDE ${PETSC_INCLUDE} ${PETSC_CC_INCLUDES})
X petsc_get_variable(PETSC_LIB_BASIC PETSC_LIB_BASIC)
X petsc_get_variable(PETSC_LIB_DIR PETSC_LIB_DIR)
X- set(PETSC_LIB "-L${PETSC_LIB_DIR} ${PETSC_LIB_BASIC}")
X+ set(PETSC_LIB "-L${PETSC_LIB_DIR} ${PETSC_LIB_BASIC} -llapack -lblas -lX11")
X
X # Remove temporary Makefile
X file(REMOVE ${petsc_config_makefile})
9ca77add4c7e8ba4ef0a7f1a94cc2d87
echo x - dolfin-devel/distinfo
sed 's/^X//' >dolfin-devel/distinfo << '735f5ad3a6ff06e21b610ff01c7259ad'
XSHA256 (dolfin-1.2.0.tar.gz) = 7f833802f88b2bbe95adbdc164a9f3bf76818e53401a25929d7db8b7237b9930
XSIZE (dolfin-1.2.0.tar.gz) = 10144756
735f5ad3a6ff06e21b610ff01c7259ad
echo x - dolfin-devel/Makefile
sed 's/^X//' >dolfin-devel/Makefile << '28ad9ac5278ea456b1a60efe1afd19f7'
X# Created by: Jason Bacon
X# $FreeBSD$
X
XPORTNAME= dolfin
XPORTVERSION= ${MMVERSION}.0
XCATEGORIES= math python
XMASTER_SITES= http://launchpad.net/dolfin/${MMVERSION}.x/${MMVERSION}.0/+download/
X
XMAINTAINER= jwbacon@tds.net
XCOMMENT= C++/Python interface of FEniCS
X
XLICENSE= LGPL3
X
X# Note: Currently can't tell if parmetis was built with openmpi or mpich2
X# Leave paths as ../../ instead of ${PORTSDIR} until committed for
X# development purposes
XBUILD_DEPENDS= ${PYTHON_SITELIBDIR}/ufc_utils:../../math/ufc \
X ${PYTHON_SITELIBDIR}/ffc:../../math/py-ffc \
X ${PYTHON_SITELIBDIR}/FIAT:../../math/py-fiat \
X ${PYTHON_SITELIBDIR}/instant:../../devel/py-instant \
X ${PYTHON_SITELIBDIR}/ufl:../../math/py-ufl \
X ${PYTHON_SITELIBDIR}/viper:../../math/py-viper \
X ${PYTHON_SITELIBDIR}/numpy:${PORTSDIR}/math/py-numpy \
X swig2.0:../../devel/swig20 \
X ${LOCALBASE}/petsc/lib/libpetsc.a:../../math/petsc \
X sphinx-build:${PORTSDIR}/textproc/py-sphinx
X
X# Require MPI
X# ${LOCALBASE}/lib/libscotch.a:../../cad/scotch
X# ${LOCALBASE}/lib/parmetis/libparmetis.a:${PORTSDIR}/math/parmetis
XLIB_DEPENDS= blas:${PORTSDIR}/math/blas \
X lapack:${PORTSDIR}/math/lapack \
X amd:${PORTSDIR}/math/suitesparse \
X umfpack:${PORTSDIR}/math/suitesparse \
X cholmod:${PORTSDIR}/math/suitesparse \
X boost_math_c99:${PORTSDIR}/devel/boost-libs \
X CGAL:${PORTSDIR}/math/cgal \
X xml2:${PORTSDIR}/textproc/libxml2 \
X cppunit:${PORTSDIR}/devel/cppunit \
X armadillo:../../math/armadillo
X
X# Dolfin requires MPI if Trilinos is enabled
X# amesos:../../math/trilinos
X# Need better depend rule to ensure vtk5 is installed
XRUN_DEPENDS= ${PYTHON_SITELIBDIR}/ufc_utils:../../math/ufc \
X ${PYTHON_SITELIBDIR}/ffc:../../math/py-ffc \
X ${PYTHON_SITELIBDIR}/FIAT:../../math/py-fiat \
X ${PYTHON_SITELIBDIR}/instant:../../devel/py-instant \
X ${PYTHON_SITELIBDIR}/ufl:../../math/py-ufl \
X ${PYTHON_SITELIBDIR}/viper:../../math/py-viper \
X ${PYTHON_SITELIBDIR}/numpy:${PORTSDIR}/math/py-numpy \
X sphinx-build:${PORTSDIR}/textproc/py-sphinx \
X vtkpython:${PORTSDIR}/math/vtk5
X
XUSE_CMAKE= yes
XUSE_PYTHON= -2.7
XPYDISTUTILS_PKGNAME= dolfin
XUSE_LDCONFIG= yes
X
X# -- (**) PETSC FreeBSD port broken
X# -- (**) SLEPC Extension of PETSc
X# -- (**) MTL4 Parallel version is commercial
X
X# FIXME: Check CMakeCache.txt for anything defaulting to work directory
X# like CHOLMOD_DIR
X# CHOLMOD and UMFPACK must be defined for FreeBSD 8.2 stock ports
X# Presumably Find*.cmake scripts require cmake > 2.8.3
X# PETSC_ARCH should be unset when using an installed petsc
X# https://answers.launchpad.net/dolfin/+question/170317
X# Trilinos, scotch, parmetis, slepc require MPI
XCMAKE_ARGS+= -DDOLFIN_ENABLE_MPI:BOOL=OFF \
X -DDOLFIN_ENABLE_SLEPC:BOOL=OFF \
X -DDOLFIN_ENABLE_TRILINOS:BOOL=OFF \
X -DDOLFIN_ENABLE_PARMETIS:BOOL=OFF \
X -DDOLFIN_ENABLE_SCOTCH:BOOL=OFF \
X -DDOLFIN_ENABLE_MTL4:BOOL=OFF \
X -DDOLFIN_ENABLE_PETSC:BOOL=ON \
X -DDOLFIN_MAN_DIR:PATH=man \
X -DCHOLMOD_DIR:PATH=${LOCALBASE} \
X -DUMFPACK_DIR:PATH=${LOCALBASE} \
X -DPETSC_DIR:PATH=${LOCALBASE}/petsc \
X -DDOLFIN_PKGCONFIG_DIR:PATH=${LOCALBASE}/libdata/pkgconfig
X
X# Trilinos requires MPI
X# -DZoltan_DIR:PATH=${LOCALBASE}/trilinos/lib/cmake/Zoltan \
X# -DML_DIR:PATH=${LOCALBASE}/trilinos/lib/cmake/ML \
X# -DIfpack_DIR:PATH=${LOCALBASE}/trilinos/lib/cmake/Ifpack \
X# -DAmesos_DIR:PATH=${LOCALBASE}/trilinos/lib/cmake/Amesos \
X# -DEpetra_DIR:PATH=${LOCALBASE}/trilinos/lib/cmake/Epetra \
X
XFETCH_ARGS= -F
X
XMAN1= dolfin-convert.1 \
X dolfin-order.1 \
X dolfin-plot.1 \
X dolfin-version.1
XMANCOMPRESSED= yes
X
XMMVERSION= 1.2
X
Xpost-patch:
X ${REINPLACE_CMD} -e 's|os.path.join(os.path.sep,"usr")|os.path.normpath("${PREFIX}")|' ${WRKSRC}/site-packages/dolfin/compilemodules/compilemodule.py
X
X.include <bsd.port.mk>
28ad9ac5278ea456b1a60efe1afd19f7
echo x - dolfin-devel/pkg-descr
sed 's/^X//' >dolfin-devel/pkg-descr << '70eb050c95815564ea8ba2fc232ebe4b'
XDOLFIN is the C++/Python interface of FEniCS, providing a consistent PSE
X(Problem Solving Environment) for ordinary and partial differential equations.
X
XWWW: https://launchpad.net/dolfin
70eb050c95815564ea8ba2fc232ebe4b
echo x - dolfin-devel/pkg-plist
sed 's/^X//' >dolfin-devel/pkg-plist << '440a441f3b5e0addb0a20a967f543c44'
Xbin/dolfin-convert
Xbin/dolfin-get-demos
Xbin/dolfin-order
Xbin/dolfin-plot
Xbin/dolfin-version
Xinclude/dolfin.h
Xinclude/dolfin/adaptivity/AdaptiveLinearVariationalSolver.h
Xinclude/dolfin/adaptivity/AdaptiveNonlinearVariationalSolver.h
Xinclude/dolfin/adaptivity/ErrorControl.h
Xinclude/dolfin/adaptivity/Extrapolation.h
Xinclude/dolfin/adaptivity/GenericAdaptiveVariationalSolver.h
Xinclude/dolfin/adaptivity/GoalFunctional.h
Xinclude/dolfin/adaptivity/LocalAssembler.h
Xinclude/dolfin/adaptivity/TimeSeries.h
Xinclude/dolfin/adaptivity/adapt.h
Xinclude/dolfin/adaptivity/adaptivesolve.h
Xinclude/dolfin/adaptivity/dolfin_adaptivity.h
Xinclude/dolfin/adaptivity/marking.h
Xinclude/dolfin/ale/ALE.h
Xinclude/dolfin/ale/ALEType.h
Xinclude/dolfin/ale/HarmonicSmoothing.h
Xinclude/dolfin/ale/MeshDisplacement.h
Xinclude/dolfin/ale/Poisson1D.h
Xinclude/dolfin/ale/Poisson2D.h
Xinclude/dolfin/ale/Poisson3D.h
Xinclude/dolfin/ale/dolfin_ale.h
Xinclude/dolfin/common/Array.h
Xinclude/dolfin/common/Hierarchical.h
Xinclude/dolfin/common/IndexSet.h
Xinclude/dolfin/common/MPI.h
Xinclude/dolfin/common/NoDeleter.h
Xinclude/dolfin/common/RangedIndexSet.h
Xinclude/dolfin/common/Set.h
Xinclude/dolfin/common/SubSystemsManager.h
Xinclude/dolfin/common/Timer.h
Xinclude/dolfin/common/UniqueIdGenerator.h
Xinclude/dolfin/common/Variable.h
Xinclude/dolfin/common/constants.h
Xinclude/dolfin/common/defines.h
Xinclude/dolfin/common/dolfin_common.h
Xinclude/dolfin/common/dolfin_doc.h
Xinclude/dolfin/common/init.h
Xinclude/dolfin/common/timing.h
Xinclude/dolfin/common/types.h
Xinclude/dolfin/common/unittest.h
Xinclude/dolfin/common/utils.h
Xinclude/dolfin/fem/Assembler.h
Xinclude/dolfin/fem/AssemblerBase.h
Xinclude/dolfin/fem/BasisFunction.h
Xinclude/dolfin/fem/BoundaryCondition.h
Xinclude/dolfin/fem/DirichletBC.h
Xinclude/dolfin/fem/DofMap.h
Xinclude/dolfin/fem/DofMapBuilder.h
Xinclude/dolfin/fem/DomainAssigner.h
Xinclude/dolfin/fem/Equation.h
Xinclude/dolfin/fem/FiniteElement.h
Xinclude/dolfin/fem/Form.h
Xinclude/dolfin/fem/GenericDofMap.h
Xinclude/dolfin/fem/LinearTimeDependentProblem.h
Xinclude/dolfin/fem/LinearVariationalProblem.h
Xinclude/dolfin/fem/LinearVariationalSolver.h
Xinclude/dolfin/fem/LocalSolver.h
Xinclude/dolfin/fem/NonlinearVariationalProblem.h
Xinclude/dolfin/fem/NonlinearVariationalSolver.h
Xinclude/dolfin/fem/OpenMpAssembler.h
Xinclude/dolfin/fem/PointSource.h
Xinclude/dolfin/fem/SparsityPatternBuilder.h
Xinclude/dolfin/fem/SystemAssembler.h
Xinclude/dolfin/fem/UFC.h
Xinclude/dolfin/fem/UFCCell.h
Xinclude/dolfin/fem/VariationalProblem.h
Xinclude/dolfin/fem/assemble.h
Xinclude/dolfin/fem/dolfin_fem.h
Xinclude/dolfin/fem/solve.h
Xinclude/dolfin/function/CoefficientAssigner.h
Xinclude/dolfin/function/Constant.h
Xinclude/dolfin/function/Expression.h
Xinclude/dolfin/function/Function.h
Xinclude/dolfin/function/FunctionSpace.h
Xinclude/dolfin/function/GenericFunction.h
Xinclude/dolfin/function/SpecialFacetFunction.h
Xinclude/dolfin/function/SpecialFunctions.h
Xinclude/dolfin/function/SubSpace.h
Xinclude/dolfin/function/dolfin_function.h
Xinclude/dolfin/generation/BoxMesh.h
Xinclude/dolfin/generation/CGALMeshBuilder.h
Xinclude/dolfin/generation/CSGCGALMeshGenerator2D.h
Xinclude/dolfin/generation/CSGCGALMeshGenerator3D.h
Xinclude/dolfin/generation/CSGGeometries3D.h
Xinclude/dolfin/generation/CSGGeometry.h
Xinclude/dolfin/generation/CSGMeshGenerator.h
Xinclude/dolfin/generation/CSGOperators.h
Xinclude/dolfin/generation/CSGPrimitive.h
Xinclude/dolfin/generation/CSGPrimitives2D.h
Xinclude/dolfin/generation/CSGPrimitives3D.h
Xinclude/dolfin/generation/GeometryToCGALConverter.h
Xinclude/dolfin/generation/Interval.h
Xinclude/dolfin/generation/IntervalMesh.h
Xinclude/dolfin/generation/PolygonalMeshGenerator.h
Xinclude/dolfin/generation/PolyhedralMeshGenerator.h
Xinclude/dolfin/generation/PolyhedronUtils.h
Xinclude/dolfin/generation/RectangleMesh.h
Xinclude/dolfin/generation/Triangulate.h
Xinclude/dolfin/generation/UnitCircle.h
Xinclude/dolfin/generation/UnitCircleMesh.h
Xinclude/dolfin/generation/UnitCube.h
Xinclude/dolfin/generation/UnitCubeMesh.h
Xinclude/dolfin/generation/UnitInterval.h
Xinclude/dolfin/generation/UnitIntervalMesh.h
Xinclude/dolfin/generation/UnitSquare.h
Xinclude/dolfin/generation/UnitSquareMesh.h
Xinclude/dolfin/generation/UnitTetrahedronMesh.h
Xinclude/dolfin/generation/UnitTriangleMesh.h
Xinclude/dolfin/generation/cgal_csg3d.h
Xinclude/dolfin/generation/compute_normal.h
Xinclude/dolfin/generation/dolfin_generation.h
Xinclude/dolfin/generation/self_intersect.h
Xinclude/dolfin/generation/triangulate_polyhedron.h
Xinclude/dolfin/graph/BoostGraphColoring.h
Xinclude/dolfin/graph/BoostGraphOrdering.h
Xinclude/dolfin/graph/Graph.h
Xinclude/dolfin/graph/GraphBuilder.h
Xinclude/dolfin/graph/GraphColoring.h
Xinclude/dolfin/graph/GraphOrdering.h
Xinclude/dolfin/graph/ParMETIS.h
Xinclude/dolfin/graph/SCOTCH.h
Xinclude/dolfin/graph/ZoltanInterface.h
Xinclude/dolfin/graph/ZoltanPartition.h
Xinclude/dolfin/graph/dolfin_graph.h
Xinclude/dolfin/intersection/IntersectionOperator.h
Xinclude/dolfin/intersection/IntersectionOperatorImplementation.h
Xinclude/dolfin/intersection/MeshPrimitive.h
Xinclude/dolfin/intersection/Point_3_Bbox_3_intersection.h
Xinclude/dolfin/intersection/Point_3_Iso_Cuboid_3_intersection.h
Xinclude/dolfin/intersection/Point_3_Line_3_intersection.h
Xinclude/dolfin/intersection/Point_3_Point_3_intersection.h
Xinclude/dolfin/intersection/Point_3_Ray_3_intersection.h
Xinclude/dolfin/intersection/Point_3_Segment_3_intersection.h
Xinclude/dolfin/intersection/Point_3_Tetrahedron_3_intersection.h
Xinclude/dolfin/intersection/Point_3_Triangle_3_intersection.h
Xinclude/dolfin/intersection/PrimitiveIntersector.h
Xinclude/dolfin/intersection/PrimitiveTraits.h
Xinclude/dolfin/intersection/Segment_3_Segment_3_intersection.h
Xinclude/dolfin/intersection/Segment_3_Tetrahedron_3_intersection.h
Xinclude/dolfin/intersection/Tetrahedron_3_Bbox_3_intersection.h
Xinclude/dolfin/intersection/Tetrahedron_3_Tetrahedron_3_intersection.h
Xinclude/dolfin/intersection/Tree_Traits.h
Xinclude/dolfin/intersection/Triangle_3_Tetrahedron_3_do_intersect_SCK.h
Xinclude/dolfin/intersection/added_intersection_3.h
Xinclude/dolfin/intersection/cgal_includes.h
Xinclude/dolfin/intersection/dolfin_intersection.h
Xinclude/dolfin/intersection/predicates_init.h
Xinclude/dolfin/io/BinaryFile.h
Xinclude/dolfin/io/Encoder.h
Xinclude/dolfin/io/File.h
Xinclude/dolfin/io/GenericFile.h
Xinclude/dolfin/io/HDF5File.h
Xinclude/dolfin/io/HDF5Interface.h
Xinclude/dolfin/io/RAWFile.h
Xinclude/dolfin/io/SAX2AttributeParser.h
Xinclude/dolfin/io/SVGFile.h
Xinclude/dolfin/io/VTKFile.h
Xinclude/dolfin/io/VTKWriter.h
Xinclude/dolfin/io/XDMFFile.h
Xinclude/dolfin/io/XMLArray.h
Xinclude/dolfin/io/XMLFile.h
Xinclude/dolfin/io/XMLFunctionData.h
Xinclude/dolfin/io/XMLLocalMeshSAX.h
Xinclude/dolfin/io/XMLMesh.h
Xinclude/dolfin/io/XMLMeshFunction.h
Xinclude/dolfin/io/XMLMeshValueCollection.h
Xinclude/dolfin/io/XMLParameters.h
Xinclude/dolfin/io/XMLVector.h
Xinclude/dolfin/io/XYZFile.h
Xinclude/dolfin/io/base64.h
Xinclude/dolfin/io/dolfin_io.h
Xinclude/dolfin/io/xmlutils.h
Xinclude/dolfin/la/BlockMatrix.h
Xinclude/dolfin/la/BlockVector.h
Xinclude/dolfin/la/CholmodCholeskySolver.h
Xinclude/dolfin/la/CoordinateMatrix.h
Xinclude/dolfin/la/DefaultFactory.h
Xinclude/dolfin/la/EpetraFactory.h
Xinclude/dolfin/la/EpetraKrylovSolver.h
Xinclude/dolfin/la/EpetraLUSolver.h
Xinclude/dolfin/la/EpetraMatrix.h
Xinclude/dolfin/la/EpetraVector.h
Xinclude/dolfin/la/GenericLUSolver.h
Xinclude/dolfin/la/GenericLinearAlgebraFactory.h
Xinclude/dolfin/la/GenericLinearOperator.h
Xinclude/dolfin/la/GenericLinearSolver.h
Xinclude/dolfin/la/GenericMatrix.h
Xinclude/dolfin/la/GenericPreconditioner.h
Xinclude/dolfin/la/GenericSparsityPattern.h
Xinclude/dolfin/la/GenericTensor.h
Xinclude/dolfin/la/GenericVector.h
Xinclude/dolfin/la/KrylovSolver.h
Xinclude/dolfin/la/LUSolver.h
Xinclude/dolfin/la/LinearAlgebraObject.h
Xinclude/dolfin/la/LinearOperator.h
Xinclude/dolfin/la/LinearSolver.h
Xinclude/dolfin/la/MUMPSLUSolver.h
Xinclude/dolfin/la/Matrix.h
Xinclude/dolfin/la/PETScBaseMatrix.h
Xinclude/dolfin/la/PETScCuspFactory.h
Xinclude/dolfin/la/PETScFactory.h
Xinclude/dolfin/la/PETScKrylovSolver.h
Xinclude/dolfin/la/PETScLUSolver.h
Xinclude/dolfin/la/PETScLinearOperator.h
Xinclude/dolfin/la/PETScMatrix.h
Xinclude/dolfin/la/PETScObject.h
Xinclude/dolfin/la/PETScPreconditioner.h
Xinclude/dolfin/la/PETScUserPreconditioner.h
Xinclude/dolfin/la/PETScVector.h
Xinclude/dolfin/la/PaStiXLUSolver.h
Xinclude/dolfin/la/SLEPcEigenSolver.h
Xinclude/dolfin/la/STLFactory.h
Xinclude/dolfin/la/STLFactoryCSC.h
Xinclude/dolfin/la/STLMatrix.h
Xinclude/dolfin/la/STLVector.h
Xinclude/dolfin/la/Scalar.h
Xinclude/dolfin/la/SparsityPattern.h
Xinclude/dolfin/la/TensorLayout.h
Xinclude/dolfin/la/TensorProductMatrix.h
Xinclude/dolfin/la/TensorProductVector.h
Xinclude/dolfin/la/TrilinosPreconditioner.h
Xinclude/dolfin/la/UmfpackLUSolver.h
Xinclude/dolfin/la/Vector.h
Xinclude/dolfin/la/dolfin_la.h
Xinclude/dolfin/la/solve.h
Xinclude/dolfin/la/uBLASDenseMatrix.h
Xinclude/dolfin/la/uBLASDummyPreconditioner.h
Xinclude/dolfin/la/uBLASFactory.h
Xinclude/dolfin/la/uBLASILUPreconditioner.h
Xinclude/dolfin/la/uBLASKrylovSolver.h
Xinclude/dolfin/la/uBLASLinearOperator.h
Xinclude/dolfin/la/uBLASMatrix.h
Xinclude/dolfin/la/uBLASPreconditioner.h
Xinclude/dolfin/la/uBLASSparseMatrix.h
Xinclude/dolfin/la/uBLASVector.h
Xinclude/dolfin/la/ublas.h
Xinclude/dolfin/log/Event.h
Xinclude/dolfin/log/LogLevel.h
Xinclude/dolfin/log/LogManager.h
Xinclude/dolfin/log/LogStream.h
Xinclude/dolfin/log/Logger.h
Xinclude/dolfin/log/Progress.h
Xinclude/dolfin/log/Table.h
Xinclude/dolfin/log/dolfin_log.h
Xinclude/dolfin/log/log.h
Xinclude/dolfin/math/Lagrange.h
Xinclude/dolfin/math/Legendre.h
Xinclude/dolfin/math/basic.h
Xinclude/dolfin/math/dolfin_math.h
Xinclude/dolfin/mesh/BoundaryComputation.h
Xinclude/dolfin/mesh/BoundaryMesh.h
Xinclude/dolfin/mesh/Cell.h
Xinclude/dolfin/mesh/CellType.h
Xinclude/dolfin/mesh/DistributedMeshTools.h
Xinclude/dolfin/mesh/DomainBoundary.h
Xinclude/dolfin/mesh/DynamicMeshEditor.h
Xinclude/dolfin/mesh/Edge.h
Xinclude/dolfin/mesh/Face.h
Xinclude/dolfin/mesh/Facet.h
Xinclude/dolfin/mesh/FacetCell.h
Xinclude/dolfin/mesh/IntervalCell.h
Xinclude/dolfin/mesh/LocalMeshData.h
Xinclude/dolfin/mesh/LocalMeshValueCollection.h
Xinclude/dolfin/mesh/Mesh.h
Xinclude/dolfin/mesh/MeshColoring.h
Xinclude/dolfin/mesh/MeshConnectivity.h
Xinclude/dolfin/mesh/MeshData.h
Xinclude/dolfin/mesh/MeshDomains.h
Xinclude/dolfin/mesh/MeshEditor.h
Xinclude/dolfin/mesh/MeshEntity.h
Xinclude/dolfin/mesh/MeshEntityIterator.h
Xinclude/dolfin/mesh/MeshEntityIteratorBase.h
Xinclude/dolfin/mesh/MeshFunction.h
Xinclude/dolfin/mesh/MeshGeometry.h
Xinclude/dolfin/mesh/MeshOrdering.h
Xinclude/dolfin/mesh/MeshPartitioning.h
Xinclude/dolfin/mesh/MeshRenumbering.h
Xinclude/dolfin/mesh/MeshSmoothing.h
Xinclude/dolfin/mesh/MeshTopology.h
Xinclude/dolfin/mesh/MeshTransformation.h
Xinclude/dolfin/mesh/MeshValueCollection.h
Xinclude/dolfin/mesh/PeriodicBoundaryComputation.h
Xinclude/dolfin/mesh/Point.h
Xinclude/dolfin/mesh/PointCell.h
Xinclude/dolfin/mesh/Restriction.h
Xinclude/dolfin/mesh/SubDomain.h
Xinclude/dolfin/mesh/SubMesh.h
Xinclude/dolfin/mesh/SubsetIterator.h
Xinclude/dolfin/mesh/TetrahedronCell.h
Xinclude/dolfin/mesh/TopologyComputation.h
Xinclude/dolfin/mesh/TriangleCell.h
Xinclude/dolfin/mesh/Vertex.h
Xinclude/dolfin/mesh/dolfin_mesh.h
Xinclude/dolfin/nls/NewtonSolver.h
Xinclude/dolfin/nls/NonlinearProblem.h
Xinclude/dolfin/nls/PETScSNESSolver.h
Xinclude/dolfin/nls/dolfin_nls.h
Xinclude/dolfin/parameter/GlobalParameters.h
Xinclude/dolfin/parameter/Parameter.h
Xinclude/dolfin/parameter/Parameters.h
Xinclude/dolfin/parameter/dolfin_parameter.h
Xinclude/dolfin/plot/ExpressionWrapper.h
Xinclude/dolfin/plot/GenericVTKPlottable.h
Xinclude/dolfin/plot/VTKPlottableCSGGeometry.h
Xinclude/dolfin/plot/VTKPlottableDirichletBC.h
Xinclude/dolfin/plot/VTKPlottableGenericFunction.h
Xinclude/dolfin/plot/VTKPlottableGenericFunction1D.h
Xinclude/dolfin/plot/VTKPlottableMesh.h
Xinclude/dolfin/plot/VTKPlottableMeshFunction.h
Xinclude/dolfin/plot/VTKPlotter.h
Xinclude/dolfin/plot/VTKWindowOutputStage.h
Xinclude/dolfin/plot/dolfin_plot.h
Xinclude/dolfin/plot/plot.h
Xinclude/dolfin/quadrature/BarycenterQuadrature.h
Xinclude/dolfin/quadrature/dolfin_quadrature.h
Xinclude/dolfin/refinement/BisectionRefinement.h
Xinclude/dolfin/refinement/LocalMeshCoarsening.h
Xinclude/dolfin/refinement/LocalMeshRefinement.h
Xinclude/dolfin/refinement/RegularCutRefinement.h
Xinclude/dolfin/refinement/RivaraRefinement.h
Xinclude/dolfin/refinement/UniformMeshRefinement.h
Xinclude/dolfin/refinement/dolfin_refinement.h
Xinclude/dolfin/refinement/refine.h
Xinclude/dolfin/swig/adaptivity/pre.i
Xinclude/dolfin/swig/ale/pre.i
Xinclude/dolfin/swig/common/pre.i
Xinclude/dolfin/swig/exceptions.i
Xinclude/dolfin/swig/fem/pre.i
Xinclude/dolfin/swig/forwarddeclarations.i
Xinclude/dolfin/swig/function/pre.i
Xinclude/dolfin/swig/globalincludes.i
Xinclude/dolfin/swig/io/pre.i
Xinclude/dolfin/swig/la/pre.i
Xinclude/dolfin/swig/log/pre.i
Xinclude/dolfin/swig/mesh/pre.i
Xinclude/dolfin/swig/nls/pre.i
Xinclude/dolfin/swig/parameter/pre.i
Xinclude/dolfin/swig/shared_ptr_classes.i
Xinclude/dolfin/swig/typemaps/array.i
Xinclude/dolfin/swig/typemaps/includes.i
Xinclude/dolfin/swig/typemaps/numpy.i
Xinclude/dolfin/swig/typemaps/primitives.i
Xinclude/dolfin/swig/typemaps/std_map.i
Xinclude/dolfin/swig/typemaps/std_pair.i
Xinclude/dolfin/swig/typemaps/std_set.i
Xinclude/dolfin/swig/typemaps/std_vector.i
Xinclude/dolfin/swig/version.i
Xlib/libdolfin.so
Xlib/libdolfin.so.1.2
Xlib/libdolfin.so.1.2.0
X%%PYTHON_SITELIBDIR%%/dolfin/__init__.py
X%%PYTHON_SITELIBDIR%%/dolfin/common/__init__.py
X%%PYTHON_SITELIBDIR%%/dolfin/common/constants.py
X%%PYTHON_SITELIBDIR%%/dolfin/common/globalparameters.py
X%%PYTHON_SITELIBDIR%%/dolfin/common/math.py
X%%PYTHON_SITELIBDIR%%/dolfin/common/memory.py
X%%PYTHON_SITELIBDIR%%/dolfin/common/plotting.py
X%%PYTHON_SITELIBDIR%%/dolfin/common/time.py
X%%PYTHON_SITELIBDIR%%/dolfin/compilemodules/__init__.py
X%%PYTHON_SITELIBDIR%%/dolfin/compilemodules/compilemodule.py
X%%PYTHON_SITELIBDIR%%/dolfin/compilemodules/compilemodule.py.bak
X%%PYTHON_SITELIBDIR%%/dolfin/compilemodules/expressions.py
X%%PYTHON_SITELIBDIR%%/dolfin/compilemodules/jit.py
X%%PYTHON_SITELIBDIR%%/dolfin/compilemodules/subdomains.py
X%%PYTHON_SITELIBDIR%%/dolfin/compilemodules/swigimportinfo.py
X%%PYTHON_SITELIBDIR%%/dolfin/cpp/__init__.py
X%%PYTHON_SITELIBDIR%%/dolfin/cpp/_common.so
X%%PYTHON_SITELIBDIR%%/dolfin/cpp/_fem.so
X%%PYTHON_SITELIBDIR%%/dolfin/cpp/_function.so
X%%PYTHON_SITELIBDIR%%/dolfin/cpp/_io.so
X%%PYTHON_SITELIBDIR%%/dolfin/cpp/_la.so
X%%PYTHON_SITELIBDIR%%/dolfin/cpp/_mesh.so
X%%PYTHON_SITELIBDIR%%/dolfin/cpp/common.py
X%%PYTHON_SITELIBDIR%%/dolfin/cpp/fem.py
X%%PYTHON_SITELIBDIR%%/dolfin/cpp/function.py
X%%PYTHON_SITELIBDIR%%/dolfin/cpp/io.py
X%%PYTHON_SITELIBDIR%%/dolfin/cpp/la.py
X%%PYTHON_SITELIBDIR%%/dolfin/cpp/mesh.py
X%%PYTHON_SITELIBDIR%%/dolfin/deprecation.py
X%%PYTHON_SITELIBDIR%%/dolfin/fem/__init__.py
X%%PYTHON_SITELIBDIR%%/dolfin/fem/adaptivesolving.py
X%%PYTHON_SITELIBDIR%%/dolfin/fem/assembling.py
X%%PYTHON_SITELIBDIR%%/dolfin/fem/bcs.py
X%%PYTHON_SITELIBDIR%%/dolfin/fem/errorcontrolgenerator.py
X%%PYTHON_SITELIBDIR%%/dolfin/fem/form.py
X%%PYTHON_SITELIBDIR%%/dolfin/fem/formmanipulations.py
X%%PYTHON_SITELIBDIR%%/dolfin/fem/interpolation.py
X%%PYTHON_SITELIBDIR%%/dolfin/fem/norms.py
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X@dirrm %%DATADIR%%/demo/pde/navier-stokes/python
X@dirrm %%DATADIR%%/demo/pde/navier-stokes/cpp
X@dirrm %%DATADIR%%/demo/pde/navier-stokes
X@dirrm %%DATADIR%%/demo/pde/mixed-poisson/python
X@dirrm %%DATADIR%%/demo/pde/mixed-poisson/cpp
X@dirrm %%DATADIR%%/demo/pde/mixed-poisson
X@dirrm %%DATADIR%%/demo/pde/hyperelasticity/python
X@dirrm %%DATADIR%%/demo/pde/hyperelasticity/cpp
X@dirrm %%DATADIR%%/demo/pde/hyperelasticity
X@dirrm %%DATADIR%%/demo/pde/cahn-hilliard/python
X@dirrm %%DATADIR%%/demo/pde/cahn-hilliard/cpp
X@dirrm %%DATADIR%%/demo/pde/cahn-hilliard
X@dirrm %%DATADIR%%/demo/pde/biharmonic/python
X@dirrm %%DATADIR%%/demo/pde/biharmonic/cpp
X@dirrm %%DATADIR%%/demo/pde/biharmonic
X@dirrm %%DATADIR%%/demo/pde
X@dirrm %%DATADIR%%/demo/la/eigenvalue/python
X@dirrm %%DATADIR%%/demo/la/eigenvalue/cpp
X@dirrm %%DATADIR%%/demo/la/eigenvalue
X@dirrm %%DATADIR%%/demo/la
X@dirrm %%DATADIR%%/demo
X@dirrm %%DATADIR%%/data/meshes
X@dirrm %%DATADIR%%/data/graphs
X@dirrm %%DATADIR%%/data
X@dirrm %%DATADIR%%/cmake
X@dirrm %%DATADIR%%
X@dirrm %%PYTHON_SITELIBDIR%%/dolfin_utils/wrappers
X@dirrm %%PYTHON_SITELIBDIR%%/dolfin_utils/pjobs
X@dirrm %%PYTHON_SITELIBDIR%%/dolfin_utils/meshconvert
X@dirrm %%PYTHON_SITELIBDIR%%/dolfin_utils/documentation
X@dirrm %%PYTHON_SITELIBDIR%%/dolfin_utils/cppparser
X@dirrm %%PYTHON_SITELIBDIR%%/dolfin_utils
X@dirrm %%PYTHON_SITELIBDIR%%/dolfin/mesh
X@dirrm %%PYTHON_SITELIBDIR%%/dolfin/importhandler
X@dirrm %%PYTHON_SITELIBDIR%%/dolfin/functions
X@dirrm %%PYTHON_SITELIBDIR%%/dolfin/fem
X@dirrm %%PYTHON_SITELIBDIR%%/dolfin/cpp
X@dirrm %%PYTHON_SITELIBDIR%%/dolfin/compilemodules
X@dirrm %%PYTHON_SITELIBDIR%%/dolfin/common
X@dirrm %%PYTHON_SITELIBDIR%%/dolfin
X@dirrm include/dolfin/swig/typemaps
X@dirrm include/dolfin/swig/parameter
X@dirrm include/dolfin/swig/nls
X@dirrm include/dolfin/swig/mesh
X@dirrm include/dolfin/swig/log
X@dirrm include/dolfin/swig/la
X@dirrm include/dolfin/swig/io
X@dirrm include/dolfin/swig/function
X@dirrm include/dolfin/swig/fem
X@dirrm include/dolfin/swig/common
X@dirrm include/dolfin/swig/ale
X@dirrm include/dolfin/swig/adaptivity
X@dirrm include/dolfin/swig
X@dirrm include/dolfin/refinement
X@dirrm include/dolfin/quadrature
X@dirrm include/dolfin/plot
X@dirrm include/dolfin/parameter
X@dirrm include/dolfin/nls
X@dirrm include/dolfin/mesh
X@dirrm include/dolfin/math
X@dirrm include/dolfin/log
X@dirrm include/dolfin/la
X@dirrm include/dolfin/io
X@dirrm include/dolfin/intersection
X@dirrm include/dolfin/graph
X@dirrm include/dolfin/generation
X@dirrm include/dolfin/function
X@dirrm include/dolfin/fem
X@dirrm include/dolfin/common
X@dirrm include/dolfin/ale
X@dirrm include/dolfin/adaptivity
X@dirrm include/dolfin
X@exec mkdir -p %D/%%DATADIR%%/demo/undocumented/restriction/python
X@exec mkdir -p %D/%%DATADIR%%/demo/undocumented/overlapping-regions/cpp
X@exec mkdir -p %D/%%DATADIR%%/demo/undocumented/multidomain/python
X@exec mkdir -p %D/%%DATADIR%%/demo/undocumented/generalized-eigenvalue/python
X@exec mkdir -p %D/%%DATADIR%%/demo/undocumented/distancequeries/python
X@exec mkdir -p %D/%%DATADIR%%/demo/pde/subdomains-poisson/cpp
440a441f3b5e0addb0a20a967f543c44
echo x - dolfin-devel/todo
sed 's/^X//' >dolfin-devel/todo << 'ecca9c3ba4167da526a4e72f71fd4b80'
Xconfigure uses atlas if present instead of blas
Xcauses problems with build due to numpy errors
Xsee peregrine-dolfin-log
X
XNeeds vtk5
X don't install vtk-python before vtk5
X
ecca9c3ba4167da526a4e72f71fd4b80
exit
>Release-Note:
>Audit-Trail:
>Unformatted:
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