Date: Thu, 15 Dec 2005 11:22:31 -0800 From: "Michael C. Shultz" <ringworm01@gmail.com> To: freebsd-ports@freebsd.org Subject: Re: need help from a C programmer Message-ID: <200512151122.32176.ringworm01@gmail.com> In-Reply-To: <200512151118.31539.ringworm01@gmail.com> References: <20051215191038.GH49639@iib.unsam.edu.ar> <200512151118.31539.ringworm01@gmail.com>
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On Thursday 15 December 2005 11:18, Michael C. Shultz wrote: > On Thursday 15 December 2005 11:10, Fernan Aguero wrote: > > Hi! > > > > I need help from someone with experience in C programming, > > and knowledge of FreeBSD specifics. > > > > I'm trying to build Jim Kent=B4s BLAT on FreeBSD > > http://www.soe.ucsc.edu/~kent/src/blat33Src.zip > > > > I've already got some progress, and a few patches, with help > > from the author and UCSC staff. But I've come to an obstacle > > that I (no C knowledge) can't fix. > > > > [ ... ] > > cd hg/pslPretty && gmake > > gmake[1]: Entering directory > > `/scratch/fernan/ports/blat/work/blatSrc/hg/pslPret ty' > > gcc34 -ggdb -o ../../bin/i386/pslPretty pslPretty.o > > ../../lib/i386/jkweb.a -lm pslPretty.o: In function `prettyOutString': > > pslPretty.o(.text+0x668): undefined reference to `__ctype_b_loc' > > pslPretty.o: In function `pslPretty': > > pslPretty.o(.text+0x116d): undefined reference to `stdout' > > collect2: ld returned 1 exit status > > gmake[1]: *** [pslPretty] Error 1 > > > > The authors also are intrigued: "stdout at least is about as > > basic and common of a C symbol as you can get. It looks > > like pslPretty isn't using ctype directly, but through > > isalpha() which is nearly as common as stdout" > > > > I, can't help much, but perhaps someone in the list has some > > clue as to what might be going on? > > > > My draft port is here > > http://genoma.unsam.edu.ar/~fernan/freebsd/blat/blat.shar.gz > > > > And the complete output here > > http://genoma.unsam.edu.ar/~fernan/freebsd/blat/blat.out.gz > > > > Thanks in advance, > > > > Fernan > > For the stdout seems like you aren't linking to libc. > > -Mike Also, does your source have #include <stdio.h> somewhere? Is the path to stdio.h set? =2DMike
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