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Date:      Mon, 9 Apr 2007 08:20:13 GMT
From:      Tsurutani Naoki <turutani@scphys.kyoto-u.ac.jp>
To:        freebsd-ports-bugs@FreeBSD.org
Subject:   Re: ports/108105: building biology/platon fails.
Message-ID:  <200704090820.l398KDNT081471@freefall.freebsd.org>

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The following reply was made to PR ports/108105; it has been noted by GNATS.

From: Tsurutani Naoki <turutani@scphys.kyoto-u.ac.jp>
To: Stefan Walter <stefan@freebsd.org>
Cc: GNATS <FreeBSD-gnats-submit@freebsd.org>
Subject: Re: ports/108105: building biology/platon fails.
Date: Mon, 09 Apr 2007 17:11:57 +0900

 % egrep -v -e '^#' -e '^\ *$' /etc/make.conf
 CPUTYPE?=athlon64
 NO_CPU_CFLAGS=	true	# Don't add -march=<cpu> to CFLAGS automatically
 CFLAGS=	-O2 -fno-strict-aliasing -pipe
 NO_BLUETOOTH=		# do not build Bluetooth related stuff
 NO_I4B=			# do not build isdn4bsd package
 NO_OPENSSH=	true	# do not build OpenSSH
 SUP_UPDATE=	yes
 SUP=		/usr/bin/csup
 SUPFLAGS=	-g -L 2
 SUPHOST=	cvsup3.jp.FreeBSD.org
 SUPFILE=	/usr/local/etc/stable-supfile
 PORTSSUPFILE=	/usr/local/etc/ports-supfile
 DOCSUPFILE=	/usr/local/etc/doc-supfile
 DOC_LANG=	en_US.ISO8859-1 ja_JP.eucJP
 SENDMAIL_MC=/etc/mail/polymer3.mc
 SENDMAIL_SUBMIT_MC=/etc/mail/polymer3.submit.mc
 SENDMAIL_CFLAGS=	-I/usr/local/include/sasl1 -DSASL -D_FFR_UNSAFE_SASL
 SENDMAIL_LDFLAGS=	-L/usr/local/lib
 SENDMAIL_LDADD=	-lsasl
 NO_WPA_SUPPLICANT_EAPOL=true
 X_WINDOW_SYSTEM=	xorg
 HAVE_MOTIF=	yes
 MASTER_SITE_OVERRIDE?= \
 	ftp://ftp4.jp.freebsd.org/pub/FreeBSD/ports/distfiles/${DIST_SUBDIR}/
 MASTER_SITE_RINGSERVER=	ftp://ring.ip-kyoto.ad.jp/pub/%SUBDIR%/
 MASTER_SITE_TEX_CTAN=	ftp://ftp.osaka-u.ac.jp/CTAN/%SUBDIR%/
 GNOME_DESKTOP_VERSION=	2
 RUBY_DEFAULT_VER=1.8
 WITH_APACHE2=1
 APACHE_PORT=www/apache22
 WITH_MOZILLA=firefox
 KERNCONF=POLYMER
 WITH_JPMAN=1
 WITH_GECKO=firefox thunderbird
 PERL_ARCH=mach
 NOPERL=yes
 NO_PERL=yes
 NO_PERL_WRAPPER=yes
 PERL_VER=5.8.8
 PERL_VERSION=5.8.8
 
 And here are all the logs after *removing* /etc/make.conf:
 % cd /usr/ports/biology/platon/
 % make
 ===>  Vulnerability check disabled, database not found
 ===>  Extracting for platon-2007.01.09
 ===>  Patching for platon-2007.01.09
 (cd /usr/ports/biology/platon/work/platon ; /usr/bin/gunzip -f platon.f.Z xdrvr.c.gz)
 /bin/cp /usr/ports/biology/platon/files/Makefile 
 /usr/ports/biology/platon/work/platon/Makefile
 /usr/bin/sed -i.bak -e "s+%%X11BASE%%+/usr/X11R6+"  
 /usr/ports/biology/platon/work/platon/Makefile
 ===>   platon-2007.01.09 depends on executable in : gfortran42 - found
 ===>   platon-2007.01.09 depends on shared library: X11.6 - found
 ===>  Configuring for platon-2007.01.09
 ===>  Building for platon-2007.01.09
 gfortran42 -O -c platon.f
 platon.f:4562.72:
 
               ASSIGN 50 TO LRET
                                                                        1
 Warning: Obsolete: ASSIGN statement at (1)
 platon.f:4594.72:
 
       ASSIGN 220 TO LRET
                                                                        1
 Warning: Obsolete: ASSIGN statement at (1)
 platon.f:4630.15:
 
       GOTO LRET, (50, 220)
               1
 Warning: Obsolete: Assigned GOTO statement at (1)
 platon.f:9050.72:
 
             ASSIGN 140 TO LRET
                                                                        1
 Warning: Obsolete: ASSIGN statement at (1)
 platon.f:9054.38:
 
             IF (IVAL .EQ. 1) GOTO LRET, (100, 140)
                                      1
 Warning: Obsolete: Assigned GOTO statement at (1)
 platon.f:9056.38:
 
             IF (IVAL .EQ. 1) GOTO LRET, (100, 140)
                                      1
 Warning: Obsolete: Assigned GOTO statement at (1)
 platon.f:9059.42:
 
             IF (NCN(NRT) .LT. 2) GOTO LRET, (100, 140)
                                          1
 Warning: Obsolete: Assigned GOTO statement at (1)
 platon.f:9062.51:
 
               IF (NCN(NRT) .GT. IPR(159)) GOTO LRET, (100, 140)
                                                   1
 Warning: Obsolete: Assigned GOTO statement at (1)
 platon.f:9064.55:
 
               IF (IATPR(IEN(NO1 + 1)) .GT. 4) GOTO LRET, (100, 140)
                                                       1
 Warning: Obsolete: Assigned GOTO statement at (1)
 platon.f:9066.72:
 
             ASSIGN 100 TO LRET
                                                                        1
 Warning: Obsolete: ASSIGN statement at (1)
 platon.f:47284.72:
 
         ASSIGN 250 TO IERR
                                                                        1
 Warning: Obsolete: ASSIGN statement at (1)
 platon.f:47296.72:
 
                 ASSIGN 250 TO IERR
                                                                        1
 Warning: Obsolete: ASSIGN statement at (1)
 platon.f:47298.72:
 
                 ASSIGN 240 TO IERR
                                                                        1
 Warning: Obsolete: ASSIGN statement at (1)
 platon.f:47306.72:
 
             ASSIGN 250 TO IERR
                                                                        1
 Warning: Obsolete: ASSIGN statement at (1)
 platon.f:47311.72:
 
             ASSIGN 240 TO IERR
                                                                        1
 Warning: Obsolete: ASSIGN statement at (1)
 platon.f:47314.17:
 
   230   GOTO IERR, (250, 240)
                 1
 Warning: Obsolete: Assigned GOTO statement at (1)
 platon.f:61881.72:
 
       ASSIGN 30 TO LRET
                                                                        1
 Warning: Obsolete: ASSIGN statement at (1)
 platon.f:62134.33:
 
         IF (IT .EQ. 0)  GOTO LRET, (30, 120)
                                 1
 Warning: Obsolete: Assigned GOTO statement at (1)
 platon.f:62219.15:
 
       GOTO LRET, (30, 120)
               1
 Warning: Obsolete: Assigned GOTO statement at (1)
 platon.f:62230.72:
 
       ASSIGN 120 TO LRET
                                                                        1
 Warning: Obsolete: ASSIGN statement at (1)
 platon.f:80250.72:
 
       ASSIGN 1110 TO LRET9
                                                                        1
 Warning: Obsolete: ASSIGN statement at (1)
 platon.f:80395.72:
 
           ASSIGN 2675 TO LRET9
                                                                        1
 Warning: Obsolete: ASSIGN statement at (1)
 platon.f:80441.72:
 
       ASSIGN 2675 TO LRET9
                                                                        1
 Warning: Obsolete: ASSIGN statement at (1)
 platon.f:80446.58:
 
       IF (JB .GT. 60 .OR. LINE(JB:JB) .EQ. ' ') GOTO LRET9, (2675, 1110)
                                                          1
 Warning: Obsolete: Assigned GOTO statement at (1)
 cc -O2 -fno-strict-aliasing -pipe   -I/usr/X11R6/include -c xdrvr.c
 gfortran42 -o platon platon.o xdrvr.o -L/usr/X11R6/lib -lX11
 platon.o(.text+0x6c24): In function `setupcc_':
 : undefined reference to `signal_'
 platon.o(.text+0x1967f): In function `s937_':
 : undefined reference to `system_'
 platon.o(.text+0x196a6): In function `s937_':
 : undefined reference to `system_'
 platon.o(.text+0x196b5): In function `s937_':
 : undefined reference to `system_'
 platon.o(.text+0x196d9): In function `s937_':
 : undefined reference to `system_'
 platon.o(.text+0x196f4): In function `s937_':
 : undefined reference to `system_'
 platon.o(.text+0x19b9c): more undefined references to `system_' follow
 collect2: ld returned 1 exit status
 *** Error code 1
 
 Stop in /usr/ports/biology/platon/work/platon.
 *** Error code 1
 
 Stop in /usr/ports/biology/platon.



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