Date: Mon, 3 Jun 2013 02:50:32 +0900 From: KATO Tsuguru <tkato432@yahoo.com> To: FreeBSD-gnats-submit@FreeBSD.org Subject: ports/179224: biology/phylip: Update to version 3.695 Message-ID: <20130603025032.868941a3ffff5417d2ff8a03@yahoo.com> Resent-Message-ID: <201306021810.r52IA6tB099570@freefall.freebsd.org>
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>Number: 179224 >Category: ports >Synopsis: biology/phylip: Update to version 3.695 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Sun Jun 02 18:10:06 UTC 2013 >Closed-Date: >Last-Modified: >Originator: KATO Tsuguru >Release: FreeBSD 8.4-RELEASE i386 >Organization: >Environment: >Description: - Update to version 3.695 >How-To-Repeat: >Fix: diff -urN /usr/ports/biology/phylip/Makefile biology/phylip/Makefile --- /usr/ports/biology/phylip/Makefile 2012-11-08 06:52:55.000000000 +0900 +++ biology/phylip/Makefile 2013-06-03 00:00:00.000000000 +0900 @@ -1,42 +1,54 @@ -# New ports collection makefile for: phylip -# Date created: 4 July 2000 -# Whom: dbader@eece.unm.edu -# +# Created by: dbader@eece.unm.edu # $FreeBSD: head/biology/phylip/Makefile 300895 2012-07-14 12:56:14Z beat $ -# PORTNAME= phylip -PORTVERSION= 3.69 +PORTVERSION= 3.695 PORTEPOCH= 1 CATEGORIES= biology MASTER_SITES= http://evolution.gs.washington.edu/phylip/download/ MAINTAINER= ports@FreeBSD.org -COMMENT= A Phylogeny Inference Package +COMMENT= Phylogeny Inference Package BUILD_DEPENDS= bash:${PORTSDIR}/shells/bash -BUILD_WRKSRC= ${WRKSRC}/src -INSTALL_WRKSRC= ${WRKSRC}/src +OPTIONS_DEFINE= DOCS EXAMPLES + +BUILD_WRKSRC= ${WRKSRC}/source +INSTALL_WRKSRC= ${WRKSRC}/source USE_XORG= x11 xaw xt USE_GMAKE= yes -MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS}" \ +MAKEFILE= Makefile.unx +MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS} -DUNX" \ DFLAGS="${CFLAGS} -DX -I${LOCALBASE}/include" \ DLIBS="-L${LOCALBASE}/lib -lX11 -lXaw -lXt -lm" +MAKE_JOBS_SAFE= yes PORTDOCS= * +PORTEXAMPLES= * + +.include <bsd.port.options.mk> post-install: @cd ${WRKSRC}/exe && \ - ${FIND} . -not -type d -not -name 'font*' -exec ${INSTALL_PROGRAM} "{}" "${PREFIX}/bin/{}" \; - ${MKDIR} ${DATADIR} + ${FIND} . -maxdepth 1 -not -type d -not -name '*.jar' \ + -not -name '*.unx' -not -name 'font*' -not -name '*.so' \ + -exec ${INSTALL_PROGRAM} "{}" "${PREFIX}/bin/{}" \; @cd ${WRKSRC}/exe && \ - ${FIND} . -not -type d -name 'font*' -exec ${INSTALL_DATA} "{}" "${DATADIR}/{}" \; -.if !defined(NOPORTDOCS) - ${MKDIR} ${DOCSDIR} - @cd ${WRKSRC}/doc && \ - ${FIND} . -not -type d -exec ${INSTALL_DATA} "{}" "${DOCSDIR}/{}" \; + ${FIND} . -maxdepth 1 -not -type d -name "*.so" \ + -exec ${INSTALL_DATA} "{}" "${PREFIX}/lib/{}" \; + @${MKDIR} ${DATADIR} + @cd ${WRKSRC}/exe && \ + ${FIND} . -maxdepth 1 -not -type d -name 'font*' \ + -exec ${INSTALL_DATA} "{}" "${DATADIR}/{}" \; +.if ${PORT_OPTIONS:MDOCS} + @${MKDIR} ${DOCSDIR} + @(cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . ${DOCSDIR}) +.endif +.if ${PORT_OPTIONS:MEXAMPLES} + @${MKDIR} ${EXAMPLESDIR} + @(cd ${WRKSRC}/exe && ${COPYTREE_SHARE} testdata ${EXAMPLESDIR}) .endif .include <bsd.port.mk> diff -urN /usr/ports/biology/phylip/distinfo biology/phylip/distinfo --- /usr/ports/biology/phylip/distinfo 2012-11-08 06:52:55.000000000 +0900 +++ biology/phylip/distinfo 2013-06-03 00:00:00.000000000 +0900 @@ -1,2 +1,2 @@ -SHA256 (phylip-3.69.tar.gz) = 27947ce8dab4416e4823db38b3d1b0bf17bc545b6907cf09dcf6177df94c1a8f -SIZE (phylip-3.69.tar.gz) = 1511935 +SHA256 (phylip-3.695.tar.gz) = 846b9acf5f9d30520f703c6541ec945378b1c9355bc3f035e0ea721931b7b8ac +SIZE (phylip-3.695.tar.gz) = 4364943 diff -urN /usr/ports/biology/phylip/pkg-plist biology/phylip/pkg-plist --- /usr/ports/biology/phylip/pkg-plist 2012-11-08 06:52:55.000000000 +0900 +++ biology/phylip/pkg-plist 2013-06-03 00:00:00.000000000 +0900 @@ -33,6 +33,8 @@ bin/retree bin/seqboot bin/treedist +lib/libdrawgram.so +lib/libdrawtree.so %%DATADIR%%/font1 %%DATADIR%%/font2 %%DATADIR%%/font3 >Release-Note: >Audit-Trail: >Unformatted:
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