Date: Tue, 13 Jan 2026 13:56:35 +0000 From: Jason W. Bacon <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 07cd81ad096d - main - biology/vsearch: Update to 2.30.3 Message-ID: <69664f13.938f.511d5711@gitrepo.freebsd.org>
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The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=07cd81ad096dd13f7677faeb1348ff255b106a40 commit 07cd81ad096dd13f7677faeb1348ff255b106a40 Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2026-01-13 13:55:27 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2026-01-13 13:55:27 +0000 biology/vsearch: Update to 2.30.3 Fix memory allocation bug Changes: https://github.com/torognes/vsearch/releases Reported by: portscout --- biology/vsearch/Makefile | 2 +- biology/vsearch/distinfo | 6 +++--- biology/vsearch/files/patch-src_arch.cc | 32 -------------------------------- 3 files changed, 4 insertions(+), 36 deletions(-) diff --git a/biology/vsearch/Makefile b/biology/vsearch/Makefile index 54f34f6f2c93..967a7e75d93d 100644 --- a/biology/vsearch/Makefile +++ b/biology/vsearch/Makefile @@ -1,6 +1,6 @@ PORTNAME= vsearch DISTVERSIONPREFIX= v -DISTVERSION= 2.30.2 +DISTVERSION= 2.30.3 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/vsearch/distinfo b/biology/vsearch/distinfo index fa8f653b59b7..42c13250edd5 100644 --- a/biology/vsearch/distinfo +++ b/biology/vsearch/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1766069466 -SHA256 (torognes-vsearch-v2.30.2_GH0.tar.gz) = f4c244d2b48637e9a42325901b832ca5b6522cec8e2006b0da2aa9b9a0b5e699 -SIZE (torognes-vsearch-v2.30.2_GH0.tar.gz) = 334780 +TIMESTAMP = 1768310816 +SHA256 (torognes-vsearch-v2.30.3_GH0.tar.gz) = 6ea0873fee8360b47bcad860ea1565cbfec4ed239a66f159610371d2836d5679 +SIZE (torognes-vsearch-v2.30.3_GH0.tar.gz) = 335610 diff --git a/biology/vsearch/files/patch-src_arch.cc b/biology/vsearch/files/patch-src_arch.cc deleted file mode 100644 index bf8d2e77dda7..000000000000 --- a/biology/vsearch/files/patch-src_arch.cc +++ /dev/null @@ -1,32 +0,0 @@ ---- src/arch.cc.orig 2025-12-20 13:37:07 UTC -+++ src/arch.cc -@@ -67,7 +67,7 @@ - #include <cstdlib> // std::realloc, std::free - - --constexpr auto memalignment = 16; -+constexpr auto vsearch_memalignment = 16; - - - auto arch_get_memused() -> uint64_t -@@ -223,9 +223,9 @@ auto xmalloc(std::size_t size) -> void * - size = std::max(size, minimal_allocation); - void * ptr = nullptr; - #ifdef _WIN32 -- ptr = _aligned_malloc(size, memalignment); -+ ptr = _aligned_malloc(size, vsearch_memalignment); - #else -- if (posix_memalign(&ptr, memalignment, size) != 0) -+ if (posix_memalign(&ptr, vsearch_memalignment, size) != 0) - { - ptr = nullptr; - } -@@ -243,7 +243,7 @@ auto xrealloc(void * ptr, std::size_t size) -> void * - static constexpr auto minimal_allocation = std::size_t{1}; - size = std::max(size, minimal_allocation); - #ifdef _WIN32 -- void * new_ptr = _aligned_realloc(ptr, size, memalignment); -+ void * new_ptr = _aligned_realloc(ptr, size, vsearch_memalignment); - #else - void * new_ptr = realloc(ptr, size); - #endifhome | help
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