Date: Wed, 2 Apr 2008 15:50:54 GMT From: Wen heping <wenheping@gmail.com> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/122374: [Update] biology/primer3 : update to 1.1.3 Message-ID: <200804021550.m32Fos6I078974@www.freebsd.org> Resent-Message-ID: <200804021600.m32G08mk065132@freefall.freebsd.org>
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>Number: 122374
>Category: ports
>Synopsis: [Update] biology/primer3 : update to 1.1.3
>Confidential: no
>Severity: non-critical
>Priority: low
>Responsible: freebsd-ports-bugs
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: update
>Submitter-Id: current-users
>Arrival-Date: Wed Apr 02 16:00:07 UTC 2008
>Closed-Date:
>Last-Modified:
>Originator: Wen heping
>Release: FreeBSD 7.0 release
>Organization:
ChangAn Middle School
>Environment:
FreeBSD fb7.wenjing.com 7.0-RELEASE FreeBSD 7.0-RELEASE #0: Sun Feb 24 19:59:52 UTC 2008 root@logan.cse.buffalo.edu:/usr/obj/usr/src/sys/GENERIC i386
>Description:
update to 1.1.3 from 1.0.1 with some change of Makefile
>How-To-Repeat:
>Fix:
Patch attached with submission follows:
--- Makefile.orig 2008-04-02 18:24:09.000000000 +0000
+++ Makefile 2008-04-02 18:31:39.000000000 +0000
@@ -6,17 +6,17 @@
#
PORTNAME= primer3
-PORTVERSION= 1.0.1
+PORTVERSION= 1.1.3
CATEGORIES= biology
-MASTER_SITES= ${MASTER_SITE_SOURCEFORGE}
-MASTER_SITE_SUBDIR= ${PORTNAME}
-DISTNAME= ${PORTNAME}_${PORTVERSION}
+MASTER_SITES= SF
+DISTNAME= ${PORTNAME}-${PORTVERSION}
MAINTAINER= fernan@iib.unsam.edu.ar
COMMENT= Primer3 helps to choose primers for PCR reactions
+USE_GMAKE= yes
WRKSRC= ${WRKDIR}/${DISTNAME}/src
-DOCUMENTS= README.${PORTNAME}_${PORTVERSION}.txt example
+DOCUMENTS= README.txt example
post-patch:
@${REINPLACE_CMD} \
@@ -29,7 +29,7 @@
do-install:
@${INSTALL_PROGRAM} ${WRKSRC}/primer3_core ${PREFIX}/bin/primer3
@${MKDIR} ${DATADIR}
- @${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/Copyright.txt ${DATADIR}
+ @${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/COPYING.txt ${DATADIR}
.if !defined(NOPORTDOCS)
@${MKDIR} ${DOCSDIR}
.for file in ${DOCUMENTS}
@@ -42,6 +42,6 @@
.endif
post-install:
- @${CAT} ${DATADIR}/Copyright.txt
+ @${CAT} ${DATADIR}/COPYING.txt
.include <bsd.port.mk>
--- distinfo.orig 2006-12-29 23:40:53.000000000 +0000
+++ distinfo 2008-04-02 18:27:05.000000000 +0000
@@ -1,3 +1,3 @@
-MD5 (primer3_1.0.1.tar.gz) = 4fa33b8667cec1b88f1516d175eb1bed
-SHA256 (primer3_1.0.1.tar.gz) = 2f7641d66d75b4830a01d31dbc96c61ffad2b1f047287009906902558a9e165e
-SIZE (primer3_1.0.1.tar.gz) = 902576
+MD5 (primer3-1.1.3.tar.gz) = 3d027d5dcbdb88c0f9622938f9d38534
+SHA256 (primer3-1.1.3.tar.gz) = ad3071fd1a8da8caae6f30b799cae4b7e53f00476ca0441b37bddf8995d1fa38
+SIZE (primer3-1.1.3.tar.gz) = 943678
--- pkg-plist.orig 2006-12-29 23:40:53.000000000 +0000
+++ pkg-plist 2008-04-02 18:34:53.000000000 +0000
@@ -1,361 +1,379 @@
bin/primer3
-%%PORTDOCS%%%%DOCSDIR%%/README.primer3_1.0.1.txt
-%%PORTDOCS%%%%DOCSDIR%%/example
-%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_gen.pl
-%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_input
-%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_long_input
-%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_long_score_output
-%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_output
-%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_score_output
-%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_test.pl
-%%PORTDOCS%%%%EXAMPLESDIR%%/long_seq_input
-%%PORTDOCS%%%%EXAMPLESDIR%%/long_seq_output
-%%PORTDOCS%%%%EXAMPLESDIR%%/long_seq_tm_test.pl
-%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production.lib
-%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production_Ns.lib
-%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production_Xs.lib
-%%PORTDOCS%%%%EXAMPLESDIR%%/p3-tmpl-mispriming_input
-%%PORTDOCS%%%%EXAMPLESDIR%%/p3-tmpl-mispriming_output
-%%PORTDOCS%%%%EXAMPLESDIR%%/p3test.pl
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_input
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_output
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/AGAG.for
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/AGAG.rev
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test.for
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test.rev
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.for
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.int
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.rev
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/long_seq.for
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/long_seq.rev
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-02.txt.for
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-02.txt.rev
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-03.txt.for
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-03.txt.rev
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-06.txt.for
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-06.txt.rev
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-19.txt.for
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-19.txt.rev
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-21.txt.for
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-21.txt.rev
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP04-07.txt.for
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP04-07.txt.rev
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/targets_test.for
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/targets_test.rev
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary1_formatted_output
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary1_input
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary1_output
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary_formatted_output
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary_input
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary_output
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_check_input
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_check_output
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_end_pathology_input
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_end_pathology_output
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_dna_conc.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_1.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_2.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_3.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_4.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_1.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_2.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_3.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_1.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_2.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_3.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns_int.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_1.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_2.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_3.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_4.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_salt_conc.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any_int.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end_int.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_1.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_product_size.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/gc_clamp_min_size.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/incorrect_task.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_gc_content_obj_fn.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_obj_fn.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm_int.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm_int.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/MAX_PRIMER_LENGTH.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_limit_int.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product_int.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm_int.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mishyb_obj_fn.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mispr_obj_fn.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_equal.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_terminal_equal.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size_int.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size_int.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pair_mispr.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pr_gc_content_obj_fn.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_size_obj_fn.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_tm_obj_fn.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err1.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err2.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err3.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err4.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err5.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err6.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err1.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err2.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err3.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err4.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err5.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err6.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality1.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality2.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality3.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality4.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/too_many_product_sizes.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_1.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_min_size.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_num_return.in
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_1.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_dna_conc.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_1.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_2.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_3.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_4.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_2.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_3.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_1.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_2.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_3.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns_int.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_1.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_2.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_3.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_4.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_salt_conc.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any_int.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end_int.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_product_size.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/gc_clamp_min_size.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/incorrect_task.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_gc_content_obj_fn.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_obj_fn.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm_int.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm_int.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/MAX_PRIMER_LENGTH.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_limit_int.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product_int.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm_int.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mishyb_obj_fn.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mispr_obj_fn.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_equal.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_terminal_equal.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size_int.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size_int.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pair_mispr.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pr_gc_content_obj_fn.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_size_obj_fn.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_tm_obj_fn.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err1.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err2.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err3.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err4.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err5.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err6.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err1.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err2.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err3.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err4.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err5.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err6.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality1.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality2.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality3.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality4.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/too_many_product_sizes.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_min_size.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_num_return.out
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_dna_conc.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_1.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_2.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_3.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_4.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_1.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_2.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_3.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_1.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_2.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_3.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns_int.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_1.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_2.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_3.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_4.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_salt_conc.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any_int.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end_int.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_1.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_product_size.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/gc_clamp_min_size.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/incorrect_task.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_gc_content_obj_fn.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_obj_fn.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm_int.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm_int.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/MAX_PRIMER_LENGTH.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_limit_int.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product_int.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm_int.out2
-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm.out2
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-%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mispr_obj_fn.out2
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+share/examples/primer3/primer_internal1_formatted_output
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+share/examples/primer3/primer_list_last/targets_test.for
+share/examples/primer3/primer_list_last/targets_test.rev
+share/examples/primer3/primer_mispriming_boundary1_formatted_output
+share/examples/primer3/primer_mispriming_boundary1_input
+share/examples/primer3/primer_mispriming_boundary1_output
+share/examples/primer3/primer_mispriming_boundary2_formatted_output
+share/examples/primer3/primer_mispriming_boundary2_input
+share/examples/primer3/primer_mispriming_boundary2_output
+share/examples/primer3/primer_mispriming_formatted_output
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+share/examples/primer3/primer_mispriming_output
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+share/examples/primer3/primer_must_use_input
+share/examples/primer3/primer_must_use_output
+share/examples/primer3/primer_num_best_input
+share/examples/primer3/primer_num_best_output
+share/examples/primer3/primer_obj_fn_input
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+share/examples/primer3/primer_output
+share/examples/primer3/primer_position_penalty_formatted_output
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+share/examples/primer3/primer_position_penalty_output
+share/examples/primer3/primer_quality_boundary_input
+share/examples/primer3/primer_quality_boundary_output
+share/examples/primer3/primer_rat_input
+share/examples/primer3/primer_rat_output
+share/examples/primer3/primer_repeat_boundary1_lib
+share/examples/primer3/primer_repeat_boundary2_lib
+share/examples/primer3/primer_repeat_long_lib
+share/examples/primer3/primer_start_codon_input
+share/examples/primer3/primer_start_codon_output
+share/examples/primer3/primer_syntax_input
+share/examples/primer3/primer_syntax_output
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+share/examples/primer3/primer_task_input
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+share/examples/primer3/primer_tm_lc_masking_formatted_output
+share/examples/primer3/primer_tm_lc_masking_input
+share/examples/primer3/primer_tm_lc_masking_output
+share/examples/primer3/repeat_lib1
+share/examples/primer3/repeat_lib2
+share/examples/primer3/repeat_lib3
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+share/examples/primer3/repeat_lib5
+share/examples/primer3/repeat_lib6
+share/examples/primer3/vgrep.pl
+share/primer3/COPYING.txt
+@dirrm share/primer3
+@dirrm share/examples/primer3/primer_list_last
+@dirrm share/examples/primer3/primer_global_err
+@dirrm share/examples/primer3/primer1_list_last
+@dirrm share/examples/primer3
+@dirrm share/doc/primer3
>Release-Note:
>Audit-Trail:
>Unformatted:
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