Date: Wed, 21 Jan 2009 09:22:08 GMT From: bf <bf2006a@yahoo.com> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/130812: [PATCH] math/jags : fix miscellaneous problems Message-ID: <200901210922.n0L9M8i0003977@www.freebsd.org> Resent-Message-ID: <200901210930.n0L9U1H0070562@freefall.freebsd.org>
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>Number: 130812 >Category: ports >Synopsis: [PATCH] math/jags : fix miscellaneous problems >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: sw-bug >Submitter-Id: current-users >Arrival-Date: Wed Jan 21 09:30:01 UTC 2009 >Closed-Date: >Last-Modified: >Originator: bf >Release: 8-CURRENT i386 >Organization: - >Environment: >Description: -fix location of pkgconfig data -fix linker flags -USE_LDCONFIG -respect NOPORTEXAMPLES -bump PORTREVISION (I am the maintainer.) >How-To-Repeat: >Fix: Patch attached with submission follows: diff -ruN jags.orig/Makefile jags/Makefile --- jags.orig/Makefile 2009-01-21 02:17:41.581368462 -0500 +++ jags/Makefile 2009-01-21 04:14:19.122973330 -0500 @@ -8,6 +8,7 @@ PORTNAME= jags PORTVERSION= 1.0.3 +PORTREVISION= 1 CATEGORIES= math MASTER_SITES= http://www-fis.iarc.fr/~martyn/software/jags/ DISTNAME= ${PORTNAME:U}-${PORTVERSION} @@ -33,14 +34,21 @@ DIST_SUBDIR= ${PORTNAME} GNU_CONFIGURE= yes -CONFIGURE_ENV= LDFLAGS=-L${PREFIX}/lib +CONFIGURE_ENV= LDFLAGS=-L${LOCALBASE}/lib USE_FORTRAN= yes +USE_LDCONFIG= yes + +post-patch: + ${REINPLACE_CMD} -e 's|[(]libdir[)]/pkgconfig|(prefix)/libdata/pkgconfig|g' \ + ${WRKSRC}/etc/Makefile.in post-install: .if !defined(NOPORTDOCS) ${MKDIR} ${DOCSDIR} ${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/jags_user_manual.pdf \ ${DOCSDIR} +.endif +.if !defined(NOPORTEXAMPLES) ${MKDIR} ${EXAMPLESDIR} ( cd ${EXAMPLESDIR}; \ ${PAX} -rzf ${DISTDIR}/${DIST_SUBDIR}/classic-bugs.tar.gz \ diff -ruN jags.orig/pkg-plist jags/pkg-plist --- jags.orig/pkg-plist 2009-01-21 02:17:41.582369427 -0500 +++ jags/pkg-plist 2009-01-21 04:14:19.158961703 -0500 @@ -70,344 +70,344 @@ lib/libjrmath.la lib/libjrmath.so lib/libjrmath.so.0 -lib/pkgconfig/jags.pc +libdata/pkgconfig/jags.pc libexec/jags-terminal %%PORTDOCS%%%%DOCSDIR%%/jags_user_manual.pdf -%%PORTDOCS%%%%EXAMPLESDIR%%/R/Rcheck.R -%%PORTDOCS%%%%EXAMPLESDIR%%/R/bench.R 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+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/hearts/hearts.dat +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/hearts/test1.cmd +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/ice/ReadMe +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/ice/bench-test1.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/ice/bench.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/ice/ice-data.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/ice/ice-inits.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/ice/icear.bug +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/ice/test1.cmd +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/jaw/ReadMe +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/jaw/bench-test1.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/jaw/bench-test2.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/jaw/bench-test3.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/jaw/jaw-constant.bug +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/jaw/jaw-data.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/jaw/jaw-inits.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/jaw/jaw-linear.bug +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/jaw/jaw-quadratic.bug +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/jaw/test1.cmd +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/jaw/test2.cmd +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/jaw/test3.cmd +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/bench-test1.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/bench-test2.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/mvotree-data.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/mvotree-inits.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/mvotree.bug +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/orange-data.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/orange-inits.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/otree.bug +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/otree.dat +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/otree.in +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/test1.cmd +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/orange/test2.cmd +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/pigs/bench-test1.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/pigs/pigs-data.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/pigs/pigs-inits.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/pigs/pigs.bug +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/pigs/test1.cmd +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/schools/bench-test1.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/schools/schools-data.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/schools/schools-inits.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/schools/schools.bug +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/schools/schools.dat +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/schools/test.bug +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/schools/test1.cmd +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/ReadMe +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/bench-test3.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/bench-test4.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/notest1.cmd +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/notest2.cmd +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant-data.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant-inits1.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant-inits2.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant-inits3.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant-inits4.R +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant.bug +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant2.bug +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/test3.cmd +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol2/stagnant/test4.cmd +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/stagnant +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/schools +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/pigs +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/orange +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/jaw +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/ice +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/hearts +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/eyes +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/dugongs +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/cervix +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/birats +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/biops +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/beetles +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/asia +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/alli +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2/air +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol2 +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/seeds +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/salm +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/rats +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/pump +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/oxford +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/mice +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/lsat +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/litters +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/line +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/leuk +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/kidney +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/inhaler +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/equiv +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/epil +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/dyes +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/bones +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1/blocker +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/vol1 +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/R +%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%% %%PORTDOCS%%@dirrm %%DOCSDIR%% @dirrm lib/JAGS/modules @dirrm lib/JAGS >Release-Note: >Audit-Trail: >Unformatted:
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