Date: Mon, 15 Mar 2021 20:09:28 +0000 (UTC) From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r568501 - in head/biology: . generand Message-ID: <202103152009.12FK9S4f031789@repo.freebsd.org>
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Author: jwb Date: Mon Mar 15 20:09:28 2021 New Revision: 568501 URL: https://svnweb.freebsd.org/changeset/ports/568501 Log: biology/generand: Generate random genomic data in FAST[AQ], SAM, or VCF format Generate random genomic data in FASTA/FASTQ, SAM, or VCF format, suitable for small academic examples or test inputs of arbitrary size. Output can be piped directly to programs or redirected to a file and edited to taste. Added: head/biology/generand/ head/biology/generand/Makefile (contents, props changed) head/biology/generand/distinfo (contents, props changed) head/biology/generand/pkg-descr (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Mon Mar 15 19:58:59 2021 (r568500) +++ head/biology/Makefile Mon Mar 15 20:09:28 2021 (r568501) @@ -48,6 +48,7 @@ SUBDIR += gatk SUBDIR += gcta SUBDIR += gemma + SUBDIR += generand SUBDIR += gff2ps SUBDIR += gmap SUBDIR += gperiodic Added: head/biology/generand/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/generand/Makefile Mon Mar 15 20:09:28 2021 (r568501) @@ -0,0 +1,18 @@ +# $FreeBSD$ + +PORTNAME= generand +DISTVERSION= 0.1.1 +CATEGORIES= biology + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Generate random genomic data in FASTA/FASTQ, SAM, or VCF format + +LICENSE= BSD2CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENSE + +USE_GITHUB= yes +GH_ACCOUNT= auerlab + +PLIST_FILES= bin/generand man/man1/generand.1.gz + +.include <bsd.port.mk> Added: head/biology/generand/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/generand/distinfo Mon Mar 15 20:09:28 2021 (r568501) @@ -0,0 +1,3 @@ +TIMESTAMP = 1615760855 +SHA256 (auerlab-generand-0.1.1_GH0.tar.gz) = 5e1b8099a4f9704e0241be184a54b2fbe76f556f58bc743bfc6992971d52d038 +SIZE (auerlab-generand-0.1.1_GH0.tar.gz) = 6481 Added: head/biology/generand/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/generand/pkg-descr Mon Mar 15 20:09:28 2021 (r568501) @@ -0,0 +1,5 @@ +Generate random genomic data in FASTA/FASTQ, SAM, or VCF format, suitable for +small academic examples or test inputs of arbitrary size. Output can be piped +directly to programs or redirected to a file and edited to taste. + +WWW: https://github.com/auerlab/generand
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