Date: Wed, 18 Jul 2018 05:28:24 +0000 (UTC) From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r474834 - head/science/libghemical Message-ID: <201807180528.w6I5SOlu038884@repo.freebsd.org>
next in thread | raw e-mail | index | archive | help
Author: yuri Date: Wed Jul 18 05:28:24 2018 New Revision: 474834 URL: https://svnweb.freebsd.org/changeset/ports/474834 Log: science/libghemical: Remove BROKEN/DEPRECATED labels The main cause of the breakage was a libary linkage problem in science/mpqc which is now fixed. Other port changes: * Add LICENSE/LICENSE_FILE * Add missing items to LIB_DEPENDS * Add workaround for the problem that configure fails due to the libgcc.so mismatch. By using CONFIGURE_ENV, preload libgcc.so from the gcc package. * Update WWW Modified: head/science/libghemical/Makefile head/science/libghemical/pkg-descr Modified: head/science/libghemical/Makefile ============================================================================== --- head/science/libghemical/Makefile Wed Jul 18 03:15:30 2018 (r474833) +++ head/science/libghemical/Makefile Wed Jul 18 05:28:24 2018 (r474834) @@ -11,20 +11,24 @@ MASTER_SITES= http://bioinformatics.org/ghemical/downl MAINTAINER= yuri@FreeBSD.org COMMENT= Support libraries of science/ghemical port -BROKEN= fails to configure -DEPRECATED= Broken for more than 5 months -EXPIRATION_DATE= 2018-08-20 +LICENSE= GPLv2 +LICENSE_FILE= ${WRKSRC}/COPYING BUILD_DEPENDS= obabel:science/openbabel \ intltool-update:textproc/intltool \ ld:devel/binutils -LIB_DEPENDS= libmpqc.so:science/mpqc \ - libf2c.so:lang/f2c +LIB_DEPENDS= libblas.so:math/blas \ + libint.so:science/libint \ + libf2c.so:lang/f2c \ + liblapack.so:math/lapack \ + libmpqc.so:science/mpqc USES= fortran gettext gmake pathfix pkgconfig libtool USE_GL= gl GNU_CONFIGURE= yes USE_LDCONFIG= yes + +CONFIGURE_ENV= LD_PRELOAD=${LOCALBASE}/lib/gcc6/libgcc_s.so # workaround: otherwise configure fails CONFIGURE_ARGS+= --enable-mpqc CPPFLAGS+= -I${LOCALBASE}/include Modified: head/science/libghemical/pkg-descr ============================================================================== --- head/science/libghemical/pkg-descr Wed Jul 18 03:15:30 2018 (r474833) +++ head/science/libghemical/pkg-descr Wed Jul 18 05:28:24 2018 (r474834) @@ -1,3 +1,3 @@ libghemical is a support library packages for biology/ghemical -WWW: http://www.uku.fi/~thassine/projects/ghemical/ +WWW: https://www.bioinformatics.org/ghemical/ghemical/index.html
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201807180528.w6I5SOlu038884>