Date: Mon, 03 Aug 2026 00:13:50 +0000 From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-branches@FreeBSD.org Subject: git: 0c7b1feac35a - 2026Q3 - science/py-MDAnalysis: Unbreak by removing unnecessary patch; Remove installed doc folder Message-ID: <6a6fdd3e.180e3.57ba6631@gitrepo.freebsd.org>
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The branch 2026Q3 has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=0c7b1feac35adf5458177933bf9fe87ad4af7d7b commit 0c7b1feac35adf5458177933bf9fe87ad4af7d7b Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2026-07-13 18:25:20 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2026-08-03 00:13:44 +0000 science/py-MDAnalysis: Unbreak by removing unnecessary patch; Remove installed doc folder Reported by: fallout (cherry picked from commit d165f681b92994b336453fa8d8a717bcaea88fdd) --- science/py-MDAnalysis/Makefile | 9 ++++++--- .../files/patch-MDAnalysis_lib_formats_src_xdrfile.c | 15 --------------- 2 files changed, 6 insertions(+), 18 deletions(-) diff --git a/science/py-MDAnalysis/Makefile b/science/py-MDAnalysis/Makefile index 45c56890488b..81b0482018d6 100644 --- a/science/py-MDAnalysis/Makefile +++ b/science/py-MDAnalysis/Makefile @@ -1,6 +1,6 @@ PORTNAME= MDAnalysis DISTVERSION= 2.10.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -32,10 +32,13 @@ RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}GridDataFormats>=0.4.0:math/py-GridDataForma USES= compiler:c++11-lang python USE_PYTHON= distutils cython autoplist pytest -# tests as of 2.10.0 - .if !defined(WITH_DEBUG) LDFLAGS+= -s .endif +TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} + +post-patch: + @${RM} -r ${WRKSRC}/doc + .include <bsd.port.mk> diff --git a/science/py-MDAnalysis/files/patch-MDAnalysis_lib_formats_src_xdrfile.c b/science/py-MDAnalysis/files/patch-MDAnalysis_lib_formats_src_xdrfile.c deleted file mode 100644 index d9dee2efbac3..000000000000 --- a/science/py-MDAnalysis/files/patch-MDAnalysis_lib_formats_src_xdrfile.c +++ /dev/null @@ -1,15 +0,0 @@ -- workaround for invalid C/C++ code, see https://github.com/MDAnalysis/mdanalysis/issues/4589 - ---- MDAnalysis/lib/formats/src/xdrfile.c.orig 2025-10-17 00:00:00 UTC -+++ MDAnalysis/lib/formats/src/xdrfile.c -@@ -132,8 +132,8 @@ struct XDR - int (*x_getbytes) (XDR *__xdrs, char *__addr, unsigned int __len); - int (*x_putbytes) (XDR *__xdrs, char *__addr, unsigned int __len); - /* two next routines are not 64-bit IO safe - don't use! */ -- int64_t (*x_getpostn) (XDR *__xdrs); -- int (*x_setpostn) (XDR *__xdrs, int64_t __pos, int __whence); -+ off_t (*x_getpostn) (XDR *__xdrs); -+ off_t (*x_setpostn) (XDR *__xdrs, off_t __pos, int __whence); - void (*x_destroy) (XDR *__xdrs); - } - *x_ops;home | help
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