Date: Thu, 23 May 2013 22:10:05 +0400 From: Andrej Zverev <az@FreeBSD.org> To: FreeBSD-gnats-submit@freebsd.org Subject: ports/178877: [patch] biology/p5-bioperl Message-ID: <E1UfZxl-000436-PY@sunner.semmy.ru> Resent-Message-ID: <201305231820.r4NIK0H9088683@freefall.freebsd.org>
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>Number: 178877 >Category: ports >Synopsis: [patch] biology/p5-bioperl >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: update >Submitter-Id: current-users >Arrival-Date: Thu May 23 18:20:00 UTC 2013 >Closed-Date: >Last-Modified: >Originator: Andrej Zverev >Release: >Organization: >Environment: >Description: - Avoid of using SITE_PERL - Remove depend on DB_File.pm since it part of perl distribution >How-To-Repeat: >Fix: --- patch.diff begins here --- Index: Makefile =================================================================== --- Makefile (revision 318886) +++ Makefile (working copy) @@ -3,7 +3,7 @@ PORTNAME= bioperl PORTVERSION= 1.6.1 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= biology perl5 MASTER_SITES= http://bioperl.org/DIST/ \ CPAN @@ -13,8 +13,7 @@ MAINTAINER= wen@FreeBSD.org COMMENT= A collection of Perl modules for bioinformatics -BUILD_DEPENDS= ${LOCALBASE}/lib/perl5/${PERL_VERSION}/Text/Wrap.pm:${PORTSDIR}/lang/${PERL_PORT} \ - ${LOCALBASE}/lib/perl5/${PERL_VERSION}/${PERL_ARCH}/DB_File.pm:${PORTSDIR}/lang/${PERL_PORT} \ +BUILD_DEPENDS= p5-Text-Tabs+Wrap>=0:${PORTSDIR}/textproc/p5-Text-Tabs+Wrap \ p5-Bio-ASN1-EntrezGene>=0:${PORTSDIR}/biology/p5-Bio-ASN1-EntrezGene \ p5-Class-AutoClass>=0:${PORTSDIR}/devel/p5-Class-AutoClass \ p5-Data-Stag>=0:${PORTSDIR}/devel/p5-Data-Stag \ --- patch.diff ends here --- >Release-Note: >Audit-Trail: >Unformatted:
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