Date: Sat, 30 Jun 2001 07:55:03 -0600 (MDT) From: dbader@eece.unm.edu To: FreeBSD-gnats-submit@freebsd.org Subject: ports/28541: new port: biology/grappa Message-ID: <200106301355.HAA02315@pequin.eece.unm.edu>
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>Number: 28541 >Category: ports >Synopsis: new port: biology/grappa >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports >State: open >Quarter: >Keywords: >Date-Required: >Class: maintainer-update >Submitter-Id: current-users >Arrival-Date: Sat Jun 30 07:00:01 PDT 2001 >Closed-Date: >Last-Modified: >Originator: David A. Bader >Release: FreeBSD 4.3-RELEASE i386 >Organization: The University of New Mexico >Environment: System: FreeBSD bean.eece.unm.edu 4.3-RELEASE FreeBSD 4.3-RELEASE #1: Wed May 2 06:51:32 MDT 2001 root@bean.eece.unm.edu:/usr/obj/usr/src/sys/BEAN4 i386 <machine, os, target, libraries (multiple lines)> >Description: This is a new port of the GPL'ed biology software GRAPPA, for phylogeny reconstruction. (I am also a co-developer of GRAPPA). >How-To-Repeat: <code/input/activities to reproduce the problem (multiple lines)> >Fix: IMPORTANT NOTE: This new port depends on an update in the port "math/concorde" that I made earlier today. Once the patches for math/concorde (which I also maintain) are committed, then this biology/grappa port should build like a charm. begin 644 grappa.tgz M'XL(",_8/3L``V=R87!P82YT87(`[5CK;^)&$,]7]J\8)9$N*&!L8Z!!314( M3HX>+V&NZ7U*%[.&56RONS9'Z2G]VSO+XP)I'CJ5X]2K?Q+"7L]K9V9G=W;( MA2_&\\)8TBBBA8.O`;#T2JD$!Z"@/_I?O4"E:%2*)<LL6P"&:1CF`92^BC6/ M,(T3*@$.I!#)2W2S"6/^/@S:+X;;\?>XS^)=9\$7Q-\L54H8_Z)I5-+X[P-/ MQC^BB3O)4[HC'8:NERWKV?@;AFY\CK]5*N.(5=&M`]!WI/]%_,_CG\_GH4WO MF`J\)B0?9V[8"$<D!@%THVH:5:L$IJX;Y/3T]#-IYDIR^'D:@GF&'ZO%<M72 MEU07%Y`WSG*&#J?+OXL+`@2XQWZ'D^.3]XY]>]GM7';[#3N;^V`[60)'X+`$ MUJ.W_6YW`(F`9,+`%RY-N`A!>(MW5P01JI?X$+I"CI""#R65G,4D#X]D`)S# M\<G;;MO.%M;T6U3-SB6LJ+8XLP7\TGK?L,GI4S(+TU@6E&7^UO?GI?'0]:<C M]F`$;+!=7K5JUPZRY9L;C"@L"_G&^GW+[%:S_HRBM0*-;EGV/`-Z3_TV^(#Y M\=,&;@VN19)OG<`I_A4>U?_U^MZICM?JOUZIK.M_T;0J:O\OE]+ZOQ<<08?- M(!(RB;&F^CYS%^4V6.4!>$)6,\OD($?0H`G68,GP;U3-9(JZV@/8LO`?P<U$ M!%5XC-&0CIB\8,QEVC0,-#::DB.D/KZ2C-6=QC&^D5ZW/^C4VO;Y6I<:^,7N M.\UNYSQC:+IFDLO:P+[N]INV<YY9I2UIUYR!W;]UF@,U.DF2J%HHS&8SS8W7 MR@I_!4*RI$`:36>EX[I?Z_5J>11K$A31[`SP9_?/,T_92NKOFZW&;</NV9T& M*CG^U.I>UEKUFF/?_[-^5H\_*=.=1K-_7PAH,GDH^D3M?=?MVCNT8([[%1F) M/`\Q_7R_2E!LL^,,:JW6;:_?10/;]W#\Z:;_SNE?WJ]6)P[T^O95\]?[PI"' MBJ75N8=\[&U_>)(:]Z"/(QXG7\BE6'`6A&BK/0Q^',8C3>6+%MS]E%;__SH> MU?_H;IS',U;`PA>+X9?AE?H/4"XOZ[^AFV;%4.?_HFZF]7\?N&:A"!CT&962 MAF.F(A]#+:3^/.8QT'`$O<D<4X2%<W"$E\RH9.FR_V[P:/VK>L]#3^Q4QZOK MOV(MU[]9Q(6O^O]BVO_O">U&"4XVSD,:>D,;_YG%9M$X^Z%LE5VO6!FR,X]Y MNCNDWIDY\KQRT:-GQ;0*?`=X8O\?L=B5N]3Q6O]G6<6'^_^BNO^W=$-/U_\^ ML%SZ57CE'#`-L2^"'I4Q#P2>!-2Y0"03)LGZ=,`2[D+-'PO)DTD0DPQB$5XR MF*"`>,JQ=10>1%)@K@4Q\"#R5VK4S1ZFGQ34G:B;OVA]XB"28?L4)W*Z;$L] M*0)0RD!U5#*&1:[R(1L!#Q=B(AJA4:BVK9J^'-2UMF9K.;B9!S3,@8./==7C MY:"AU=0XE:&8Y6"`SVI2'Q156\LI$;_]5D,%"<4^>`1Q,AW-U02&V/[>18*' M"3(LW9-[\T;1]Z1P-2@G$W24RSWTAS,/(@WJ7*A[RRGNK&/H.?5%OYR#MW1& M.8<3]9;52#,$KIKPJ93H%-2'378.#I<+\Q"P2Q2S&`3.'3W$_HA\G"`PKH*@ M9D[BB+H+#R,E-O1QS(?8OR?89"LN",&G0^:KJ?B,?E2#"S[8Y"/Q5$5@P9-, M:`)BR.9P@D<^D,SCX2I>PLL"15=+C/G4IXO;6`P253Y1S!HAAZM^\Q`2>L>6 M(?:XC)%@)E0(,=OB==!XB,Z!Q7V#B@$&;BK#F.`G+O'C1XRTBKZ21T-LS<GA MJB\]Q'3BZPQZ(%1"-L*TY@/DD-QEL0:$W-S<5.'%"X/ETBA\W]O<$_4_\M%? MN]3QZOEO7?^Q_[,6_5^Q4DGK_U[P</-#-F^)-N]^OK6)*5*D2)$B18H=XV\; '];#3`"@``/^Q ` end -- David A. Bader Office: 505-277-6724 Assistant Professor and Regents' Lecturer FAX: 505-277-1439 Electrical and Computer Engineering Department University of New Mexico dbader@eece.unm.edu Albuquerque, NM 87131 http://www.eece.unm.edu/~dbader >Release-Note: >Audit-Trail: >Unformatted: To Unsubscribe: send mail to majordomo@FreeBSD.org with "unsubscribe freebsd-ports" in the body of the message
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