Date: Mon, 05 Feb 2007 16:36:37 -0600 From: Eric van Gyzen <eric@vangyzen.net> To: Joey Mingrone <joey@mingrone.org> Cc: ports@FreeBSD.org Subject: Re: FreeBSD Port: R-2.4.1 Message-ID: <45C7B175.50603@vangyzen.net> In-Reply-To: <f5b896260702051425x7fbe2d65k957447c3aad6a0f2@mail.gmail.com> References: <f5b896260702051425x7fbe2d65k957447c3aad6a0f2@mail.gmail.com>
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Joey, Try removing any existing R installation before building 2.4.1. Also, reinstall all of R's dependencies -- blas and its dependents are now built with gfortran 4.2.0. Eric Joey Mingrone wrote: > Hi: > > I'm trying to install the R port, but get linking errors during the > installation. I've included the text below. > > Here's what my uname -a says: > > FreeBSD karlsruhe.mingrone.org 6.1-RELEASE-p11 FreeBSD 6.1-RELEASE-p11 > #0: Wed Dec 20 08:25:54 AST 2006 > root@karlsruhe.mingrone.org:/usr/obj/usr/src/sys/KARLSRUHE_MINGRONE_ORG_2006-12-20 > > i386 > > Thanks for any help you can provide and please let me know if there is > any other information you need. > > Joey > > > cc -std=gnu99 -I. -I../../src/include -I../../src/include > -I/usr/local/include -DHAVE_CONFIG_H -D__NO_MATH_INLINES -fpic -O2 > -fno-strict-aliasing -pipe -c util.c -o util.o > cc -std=gnu99 -I. -I../../src/include -I../../src/include > -I/usr/local/include -DHAVE_CONFIG_H -D__NO_MATH_INLINES -fpic -O2 > -fno-strict-aliasing -pipe -c version.c -o version.o > cc -std=gnu99 -I. -I../../src/include -I../../src/include > -I/usr/local/include -DHAVE_CONFIG_H -D__NO_MATH_INLINES -fpic -O2 > -fno-strict-aliasing -pipe -c vfonts.c -o vfonts.o > gfortran42 -D__NO_MATH_INLINES -fpic -g -O2 -c xxxpr.f -o xxxpr.o > cc -std=gnu99 -shared -L/usr/local/lib -o libR.so CConverters.o > CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o > apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o > colors.o complex.o connections.o context.o cov.o cum.o dcf.o > datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o dstruct.o > duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o > gevents.o gram.o gram-ex.o graphics.o identical.o internet.o > iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o > match.o memory.o model.o names.o objects.o optim.o optimize.o > options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o > print.o printarray.o printvector.o printutils.o qsort.o random.o > regex.o registration.o relop.o rlocale.o saveload.o scan.o seq.o > serialize.o size.o sort.o source.o split.o sprintf.o startup.o > subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o > version.o vfonts.o xxxpr.o `ls ../appl/*.o ../nmath/*.o ../unix/*.o > 2>/dev/null|grep -v /ext-` -lblas > -L/usr/local/lib/gcc-4.2.0/gcc/i386-portbld-freebsd6.1/4.2.0 > -L/usr/local/lib/gcc-4.2.0 -lgfortran -lm -lgcc_s > /usr/local/lib/libintl.so /usr/local/lib/libiconv.so -Wl,-rpath > -Wl,/usr/local/lib -lreadline -lpcre -lbz2 -lz -lm -liconv > mkdir /usr/ports/math/R/work/R-2.4.1/bin/exec > mkdir /usr/ports/math/R/work/R-2.4.1/lib > cc -std=gnu99 -I. -I../../src/include -I../../src/include > -I/usr/local/include -DHAVE_CONFIG_H -D__NO_MATH_INLINES -fpic -O2 > -fno-strict-aliasing -pipe -c Rmain.c -o Rmain.o > cc -std=gnu99 -export-dynamic -L/usr/local/lib -o R.bin Rmain.o > -L../../lib -lR > /usr/local/lib/gcc-4.2.0/libgfortran.so.2: undefined reference to > `__mulxc3@GCC_4.0.0' > /usr/local/lib/gcc-4.2.0/libgfortran.so.2: undefined reference to > `__mulsc3@GCC_4.0.0' > /usr/local/lib/gcc-4.2.0/libgfortran.so.2: undefined reference to > `__divsc3@GCC_4.0.0' > /usr/local/lib/gcc-4.2.0/libgfortran.so.2: undefined reference to > `__muldc3@GCC_4.0.0' > /usr/local/lib/gcc-4.2.0/libgfortran.so.2: undefined reference to > `__divdc3@GCC_4.0.0' > /usr/local/lib/gcc-4.2.0/libgfortran.so.2: undefined reference to > `__divxc3@GCC_4.0.0' > *** Error code 1 > > Stop in /usr/ports/math/R/work/R-2.4.1/src/main. > *** Error code 1 > > Stop in /usr/ports/math/R/work/R-2.4.1/src/main. > *** Error code 1 > > Stop in /usr/ports/math/R/work/R-2.4.1/src. > *** Error code 1 > > Stop in /usr/ports/math/R/work/R-2.4.1. > *** Error code 1 > > Stop in /usr/ports/math/R. > ** Command failed [exit code 1]: /usr/bin/script -qa > /tmp/portinstall.44120.0 env make > ** Fix the problem and try again. > ** Listing the failed packages (*:skipped / !:failed) > ! math/R (linker error) > ---> Packages processed: 0 done, 0 ignored, 0 skipped and 1 failed >
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