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Date:      Sun, 5 Jan 2014 12:07:21 +0000 (UTC)
From:      Andrej Zverev <az@FreeBSD.org>
To:        ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org
Subject:   svn commit: r338751 - in head: biology/p5-Bio-Das biology/p5-Bio-Glite biology/p5-Bio-Phylo devel/p5-Algorithm-SVM devel/p5-VCP-Source-cvsbk graphics/p5-OpenGL mail/p5-MIME-Fast math/p5-Algorithm-K...
Message-ID:  <201401051207.s05C7L3Q050268@svn.freebsd.org>

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Author: az
Date: Sun Jan  5 12:07:20 2014
New Revision: 338751
URL: http://svnweb.freebsd.org/changeset/ports/338751

Log:
  - support stage

Modified:
  head/biology/p5-Bio-Das/Makefile
  head/biology/p5-Bio-Das/pkg-plist   (contents, props changed)
  head/biology/p5-Bio-Glite/Makefile
  head/biology/p5-Bio-Glite/pkg-plist   (contents, props changed)
  head/biology/p5-Bio-Phylo/Makefile
  head/biology/p5-Bio-Phylo/pkg-plist
  head/devel/p5-Algorithm-SVM/Makefile
  head/devel/p5-Algorithm-SVM/pkg-plist   (contents, props changed)
  head/devel/p5-VCP-Source-cvsbk/Makefile
  head/devel/p5-VCP-Source-cvsbk/pkg-plist   (contents, props changed)
  head/graphics/p5-OpenGL/Makefile
  head/graphics/p5-OpenGL/pkg-plist   (contents, props changed)
  head/mail/p5-MIME-Fast/Makefile
  head/mail/p5-MIME-Fast/pkg-plist   (contents, props changed)
  head/math/p5-Algorithm-KMeans/Makefile
  head/math/p5-Algorithm-KMeans/pkg-plist
  head/net/p5-Jifty-Plugin-Authentication-Ldap/Makefile
  head/net/p5-Jifty-Plugin-Authentication-Ldap/pkg-plist   (contents, props changed)
  head/net/p5-Parallel-Pvm/Makefile
  head/net/p5-Parallel-Pvm/pkg-plist   (contents, props changed)
  head/textproc/p5-Tree-Suffix/Makefile   (contents, props changed)
  head/textproc/p5-Tree-Suffix/pkg-plist   (contents, props changed)

Modified: head/biology/p5-Bio-Das/Makefile
==============================================================================
--- head/biology/p5-Bio-Das/Makefile	Sun Jan  5 08:14:25 2014	(r338750)
+++ head/biology/p5-Bio-Das/Makefile	Sun Jan  5 12:07:20 2014	(r338751)
@@ -19,17 +19,4 @@ BUILD_DEPENDS:=	${RUN_DEPENDS}
 USES=		perl5
 USE_PERL5=	configure
 
-MAN3=	Bio::Das.3 Bio::Das::AGPServer::Config.3 Bio::Das::AGPServer::Daemon.3 \
-	Bio::Das::AGPServer::Parser.3 Bio::Das::AGPServer::SQLStorage.3 \
-	Bio::Das::AGPServer::SQLStorage::CSV::DB.3 \
-	Bio::Das::AGPServer::SQLStorage::MySQL::DB.3 \
-	Bio::Das::DSN.3 Bio::Das::Feature.3 Bio::Das::FeatureIterator.3 \
-	Bio::Das::HTTP::Fetch.3 Bio::Das::Map.3 Bio::Das::Request.3 \
-	Bio::Das::Request::Dnas.3 Bio::Das::Request::Dsn.3 \
-	Bio::Das::Request::Entry_points.3 Bio::Das::Request::Feature2Segments.3 \
-	Bio::Das::Request::Sequences.3 Bio::Das::Request::Stylesheet.3 \
-	Bio::Das::Request::Types.3 Bio::Das::Segment.3 Bio::Das::Stylesheet.3 \
-	Bio::Das::Type.3 Bio::Das::TypeHandler.3 Bio::Das::Util.3
-
-NO_STAGE=	yes
 .include <bsd.port.mk>

Modified: head/biology/p5-Bio-Das/pkg-plist
==============================================================================
--- head/biology/p5-Bio-Das/pkg-plist	Sun Jan  5 08:14:25 2014	(r338750)
+++ head/biology/p5-Bio-Das/pkg-plist	Sun Jan  5 12:07:20 2014	(r338751)
@@ -26,6 +26,31 @@
 %%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/CSV/DB.pm
 %%SITE_PERL%%/Bio/Das/AGPServer/SQLStorage/MySQL/DB.pm
 %%SITE_PERL%%/Bio/Das/HTTP/Fetch.pm
+%%PERL5_MAN3%%/Bio::Das.3.gz
+%%PERL5_MAN3%%/Bio::Das::AGPServer::Config.3.gz
+%%PERL5_MAN3%%/Bio::Das::AGPServer::Daemon.3.gz
+%%PERL5_MAN3%%/Bio::Das::AGPServer::Parser.3.gz
+%%PERL5_MAN3%%/Bio::Das::AGPServer::SQLStorage.3.gz
+%%PERL5_MAN3%%/Bio::Das::AGPServer::SQLStorage::CSV::DB.3.gz
+%%PERL5_MAN3%%/Bio::Das::AGPServer::SQLStorage::MySQL::DB.3.gz
+%%PERL5_MAN3%%/Bio::Das::DSN.3.gz
+%%PERL5_MAN3%%/Bio::Das::Feature.3.gz
+%%PERL5_MAN3%%/Bio::Das::FeatureIterator.3.gz
+%%PERL5_MAN3%%/Bio::Das::HTTP::Fetch.3.gz
+%%PERL5_MAN3%%/Bio::Das::Map.3.gz
+%%PERL5_MAN3%%/Bio::Das::Request.3.gz
+%%PERL5_MAN3%%/Bio::Das::Request::Dnas.3.gz
+%%PERL5_MAN3%%/Bio::Das::Request::Dsn.3.gz
+%%PERL5_MAN3%%/Bio::Das::Request::Entry_points.3.gz
+%%PERL5_MAN3%%/Bio::Das::Request::Feature2Segments.3.gz
+%%PERL5_MAN3%%/Bio::Das::Request::Sequences.3.gz
+%%PERL5_MAN3%%/Bio::Das::Request::Stylesheet.3.gz
+%%PERL5_MAN3%%/Bio::Das::Request::Types.3.gz
+%%PERL5_MAN3%%/Bio::Das::Segment.3.gz
+%%PERL5_MAN3%%/Bio::Das::Stylesheet.3.gz
+%%PERL5_MAN3%%/Bio::Das::Type.3.gz
+%%PERL5_MAN3%%/Bio::Das::TypeHandler.3.gz
+%%PERL5_MAN3%%/Bio::Das::Util.3.gz
 @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Das
 @dirrmtry %%SITE_PERL%%/Bio/Das/Request
 @dirrmtry %%SITE_PERL%%/Bio/Das/HTTP

Modified: head/biology/p5-Bio-Glite/Makefile
==============================================================================
--- head/biology/p5-Bio-Glite/Makefile	Sun Jan  5 08:14:25 2014	(r338750)
+++ head/biology/p5-Bio-Glite/Makefile	Sun Jan  5 12:07:20 2014	(r338751)
@@ -17,7 +17,4 @@ RUN_DEPENDS:=	${BUILD_DEPENDS}
 USES=		perl5
 USE_PERL5=	configure
 
-MAN3=	Bio::Glite.3
-
-NO_STAGE=	yes
 .include <bsd.port.mk>

Modified: head/biology/p5-Bio-Glite/pkg-plist
==============================================================================
--- head/biology/p5-Bio-Glite/pkg-plist	Sun Jan  5 08:14:25 2014	(r338750)
+++ head/biology/p5-Bio-Glite/pkg-plist	Sun Jan  5 12:07:20 2014	(r338751)
@@ -1,5 +1,6 @@
 %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Glite/.packlist
 %%SITE_PERL%%/Bio/Glite.pm
+%%PERL5_MAN3%%/Bio::Glite.3.gz
 @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Glite
 @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio
 @dirrmtry %%SITE_PERL%%/Bio

Modified: head/biology/p5-Bio-Phylo/Makefile
==============================================================================
--- head/biology/p5-Bio-Phylo/Makefile	Sun Jan  5 08:14:25 2014	(r338750)
+++ head/biology/p5-Bio-Phylo/Makefile	Sun Jan  5 12:07:20 2014	(r338751)
@@ -30,125 +30,6 @@ TEST_DEPENDS=	p5-JSON>=0:${PORTSDIR}/con
 USES=		perl5
 USE_PERL5=	configure
 
-MAN3=		Bio::Phylo.3 \
-		Bio::Phylo::EvolutionaryModels.3 \
-		Bio::Phylo::Factory.3 \
-		Bio::Phylo::Forest.3 \
-		Bio::Phylo::Forest::DrawNode.3 \
-		Bio::Phylo::Forest::DrawTree.3 \
-		Bio::Phylo::Forest::Node.3 \
-		Bio::Phylo::Forest::NodeRole.3 \
-		Bio::Phylo::Forest::Tree.3 \
-		Bio::Phylo::Forest::TreeRole.3 \
-		Bio::Phylo::Generator.3 \
-		Bio::Phylo::IO.3 \
-		Bio::Phylo::Identifiable.3 \
-		Bio::Phylo::Listable.3 \
-		Bio::Phylo::ListableRole.3 \
-		Bio::Phylo::Manual.3 \
-		Bio::Phylo::Matrices.3 \
-		Bio::Phylo::Matrices::Character.3 \
-		Bio::Phylo::Matrices::Characters.3 \
-		Bio::Phylo::Matrices::Datatype.3 \
-		Bio::Phylo::Matrices::Datatype::Continuous.3 \
-		Bio::Phylo::Matrices::Datatype::Custom.3 \
-		Bio::Phylo::Matrices::Datatype::Dna.3 \
-		Bio::Phylo::Matrices::Datatype::Illumina.3 \
-		Bio::Phylo::Matrices::Datatype::Mixed.3 \
-		Bio::Phylo::Matrices::Datatype::Protein.3 \
-		Bio::Phylo::Matrices::Datatype::Restriction.3 \
-		Bio::Phylo::Matrices::Datatype::Rna.3 \
-		Bio::Phylo::Matrices::Datatype::Sanger.3 \
-		Bio::Phylo::Matrices::Datatype::Solexa.3 \
-		Bio::Phylo::Matrices::Datatype::Standard.3 \
-		Bio::Phylo::Matrices::Datum.3 \
-		Bio::Phylo::Matrices::DatumRole.3 \
-		Bio::Phylo::Matrices::Matrix.3 \
-		Bio::Phylo::Matrices::MatrixRole.3 \
-		Bio::Phylo::Matrices::TypeSafeData.3 \
-		Bio::Phylo::Mediators::TaxaMediator.3 \
-		Bio::Phylo::NeXML::DOM.3 \
-		Bio::Phylo::NeXML::DOM::Document.3 \
-		Bio::Phylo::NeXML::DOM::Document::Libxml.3 \
-		Bio::Phylo::NeXML::DOM::Document::Twig.3 \
-		Bio::Phylo::NeXML::DOM::Element.3 \
-		Bio::Phylo::NeXML::DOM::Element::Libxml.3 \
-		Bio::Phylo::NeXML::DOM::Element::Twig.3 \
-		Bio::Phylo::NeXML::Entities.3 \
-		Bio::Phylo::NeXML::Meta.3 \
-		Bio::Phylo::NeXML::Meta::XMLLiteral.3 \
-		Bio::Phylo::NeXML::Writable.3 \
-		Bio::Phylo::Parsers::Abstract.3 \
-		Bio::Phylo::Parsers::Adjacency.3 \
-		Bio::Phylo::Parsers::Fasta.3 \
-		Bio::Phylo::Parsers::Fastq.3 \
-		Bio::Phylo::Parsers::Figtree.3 \
-		Bio::Phylo::Parsers::Json.3 \
-		Bio::Phylo::Parsers::Newick.3 \
-		Bio::Phylo::Parsers::Nexml.3 \
-		Bio::Phylo::Parsers::Nexus.3 \
-		Bio::Phylo::Parsers::Phylip.3 \
-		Bio::Phylo::Parsers::Phyloxml.3 \
-		Bio::Phylo::Parsers::Table.3 \
-		Bio::Phylo::Parsers::Taxlist.3 \
-		Bio::Phylo::Parsers::Tnrs.3 \
-		Bio::Phylo::Parsers::Tolweb.3 \
-		Bio::Phylo::Parsers::Ubiocbmeta.3 \
-		Bio::Phylo::Parsers::Ubiometa.3 \
-		Bio::Phylo::Parsers::Ubiosearch.3 \
-		Bio::Phylo::PhyloWS.3 \
-		Bio::Phylo::PhyloWS::Client.3 \
-		Bio::Phylo::PhyloWS::Resource.3 \
-		Bio::Phylo::PhyloWS::Resource::Description.3 \
-		Bio::Phylo::PhyloWS::Service.3 \
-		Bio::Phylo::PhyloWS::Service::Timetree.3 \
-		Bio::Phylo::PhyloWS::Service::Tolweb.3 \
-		Bio::Phylo::PhyloWS::Service::UbioClassificationBank.3 \
-		Bio::Phylo::PhyloWS::Service::UbioNameBank.3 \
-		Bio::Phylo::Project.3 \
-		Bio::Phylo::Set.3 \
-		Bio::Phylo::Taxa.3 \
-		Bio::Phylo::Taxa::TaxaLinker.3 \
-		Bio::Phylo::Taxa::Taxon.3 \
-		Bio::Phylo::Taxa::TaxonLinker.3 \
-		Bio::Phylo::Treedrawer.3 \
-		Bio::Phylo::Treedrawer::Abstract.3 \
-		Bio::Phylo::Treedrawer::Canvas.3 \
-		Bio::Phylo::Treedrawer::Gif.3 \
-		Bio::Phylo::Treedrawer::Jpeg.3 \
-		Bio::Phylo::Treedrawer::Pdf.3 \
-		Bio::Phylo::Treedrawer::Png.3 \
-		Bio::Phylo::Treedrawer::Processing.3 \
-		Bio::Phylo::Treedrawer::Svg.3 \
-		Bio::Phylo::Treedrawer::Swf.3 \
-		Bio::Phylo::Unparsers::Abstract.3 \
-		Bio::Phylo::Unparsers::Adjacency.3 \
-		Bio::Phylo::Unparsers::Cdao.3 \
-		Bio::Phylo::Unparsers::Fasta.3 \
-		Bio::Phylo::Unparsers::Hennig86.3 \
-		Bio::Phylo::Unparsers::Html.3 \
-		Bio::Phylo::Unparsers::Json.3 \
-		Bio::Phylo::Unparsers::Mrp.3 \
-		Bio::Phylo::Unparsers::Newick.3 \
-		Bio::Phylo::Unparsers::Nexml.3 \
-		Bio::Phylo::Unparsers::Nexus.3 \
-		Bio::Phylo::Unparsers::Pagel.3 \
-		Bio::Phylo::Unparsers::Phylip.3 \
-		Bio::Phylo::Unparsers::Phyloxml.3 \
-		Bio::Phylo::Unparsers::Rss1.3 \
-		Bio::Phylo::Unparsers::Taxlist.3 \
-		Bio::Phylo::Util::CONSTANT.3 \
-		Bio::Phylo::Util::CONSTANT::Int.3 \
-		Bio::Phylo::Util::Dependency.3 \
-		Bio::Phylo::Util::Exceptions.3 \
-		Bio::Phylo::Util::IDPool.3 \
-		Bio::Phylo::Util::Logger.3 \
-		Bio::Phylo::Util::MOP.3 \
-		Bio::Phylo::Util::OptionalInterface.3 \
-		Bio::Phylo::Util::StackTrace.3 \
-		Bio::PhyloRole.3
-
-NO_STAGE=	yes
 post-patch:
 	@${REINPLACE_CMD} -e '/NAME/ s|Bio-Phylo|Bio::Phylo|' ${WRKSRC}/Makefile.PL
 

Modified: head/biology/p5-Bio-Phylo/pkg-plist
==============================================================================
--- head/biology/p5-Bio-Phylo/pkg-plist	Sun Jan  5 08:14:25 2014	(r338750)
+++ head/biology/p5-Bio-Phylo/pkg-plist	Sun Jan  5 12:07:20 2014	(r338751)
@@ -122,6 +122,123 @@
 %%SITE_PERL%%/Bio/Phylo/Util/OptionalInterface.pm
 %%SITE_PERL%%/Bio/Phylo/Util/StackTrace.pm
 %%SITE_PERL%%/Bio/PhyloRole.pm
+%%PERL5_MAN3%%/Bio::Phylo.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::EvolutionaryModels.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Factory.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Forest.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Forest::DrawNode.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Forest::DrawTree.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Forest::Node.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Forest::NodeRole.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Forest::Tree.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Forest::TreeRole.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Generator.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::IO.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Identifiable.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Listable.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::ListableRole.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Manual.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Matrices.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Matrices::Character.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Matrices::Characters.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype::Continuous.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype::Custom.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype::Dna.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype::Illumina.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype::Mixed.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype::Protein.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype::Restriction.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype::Rna.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype::Sanger.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype::Solexa.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datatype::Standard.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Matrices::Datum.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Matrices::DatumRole.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Matrices::Matrix.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Matrices::MatrixRole.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Matrices::TypeSafeData.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Mediators::TaxaMediator.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::NeXML::DOM.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::NeXML::DOM::Document.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::NeXML::DOM::Document::Libxml.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::NeXML::DOM::Document::Twig.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::NeXML::DOM::Element.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::NeXML::DOM::Element::Libxml.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::NeXML::DOM::Element::Twig.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::NeXML::Entities.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::NeXML::Meta.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::NeXML::Meta::XMLLiteral.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::NeXML::Writable.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Parsers::Abstract.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Parsers::Adjacency.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Parsers::Fasta.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Parsers::Fastq.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Parsers::Figtree.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Parsers::Json.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Parsers::Newick.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Parsers::Nexml.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Parsers::Nexus.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Parsers::Phylip.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Parsers::Phyloxml.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Parsers::Table.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Parsers::Taxlist.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Parsers::Tnrs.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Parsers::Tolweb.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Parsers::Ubiocbmeta.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Parsers::Ubiometa.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Parsers::Ubiosearch.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::PhyloWS.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::PhyloWS::Client.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::PhyloWS::Resource.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::PhyloWS::Resource::Description.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::PhyloWS::Service.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::PhyloWS::Service::Timetree.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::PhyloWS::Service::Tolweb.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::PhyloWS::Service::UbioClassificationBank.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::PhyloWS::Service::UbioNameBank.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Project.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Set.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Taxa.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Taxa::TaxaLinker.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Taxa::Taxon.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Taxa::TaxonLinker.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Treedrawer.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Treedrawer::Abstract.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Treedrawer::Canvas.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Treedrawer::Gif.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Treedrawer::Jpeg.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Treedrawer::Pdf.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Treedrawer::Png.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Treedrawer::Processing.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Treedrawer::Svg.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Treedrawer::Swf.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Abstract.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Adjacency.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Cdao.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Fasta.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Hennig86.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Html.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Json.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Mrp.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Newick.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Nexml.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Nexus.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Pagel.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Phylip.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Phyloxml.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Rss1.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Unparsers::Taxlist.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Util::CONSTANT.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Util::CONSTANT::Int.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Util::Dependency.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Util::Exceptions.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Util::IDPool.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Util::Logger.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Util::MOP.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Util::OptionalInterface.3.gz
+%%PERL5_MAN3%%/Bio::Phylo::Util::StackTrace.3.gz
+%%PERL5_MAN3%%/Bio::PhyloRole.3.gz
 @dirrm %%SITE_PERL%%/Bio/Phylo/Util/CONSTANT
 @dirrm %%SITE_PERL%%/Bio/Phylo/Util
 @dirrm %%SITE_PERL%%/Bio/Phylo/Unparsers

Modified: head/devel/p5-Algorithm-SVM/Makefile
==============================================================================
--- head/devel/p5-Algorithm-SVM/Makefile	Sun Jan  5 08:14:25 2014	(r338750)
+++ head/devel/p5-Algorithm-SVM/Makefile	Sun Jan  5 12:07:20 2014	(r338751)
@@ -12,11 +12,6 @@ COMMENT=	Perl bindings for the libsvm Su
 
 USES=		perl5
 USE_PERL5=	configure
-
-MAN3=		Algorithm::SVM.3 \
-		Algorithm::SVM::DataSet.3
-
 CC=		c++
 
-NO_STAGE=	yes
 .include <bsd.port.mk>

Modified: head/devel/p5-Algorithm-SVM/pkg-plist
==============================================================================
--- head/devel/p5-Algorithm-SVM/pkg-plist	Sun Jan  5 08:14:25 2014	(r338750)
+++ head/devel/p5-Algorithm-SVM/pkg-plist	Sun Jan  5 12:07:20 2014	(r338751)
@@ -4,6 +4,8 @@
 %%SITE_PERL%%/%%PERL_ARCH%%/auto/Algorithm/SVM/SVM.bs
 %%SITE_PERL%%/%%PERL_ARCH%%/auto/Algorithm/SVM/autosplit.ix
 %%SITE_PERL%%/%%PERL_ARCH%%/auto/Algorithm/SVM/.packlist
+%%PERL5_MAN3%%/Algorithm::SVM.3.gz
+%%PERL5_MAN3%%/Algorithm::SVM::DataSet.3.gz
 @dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Algorithm/SVM
 @dirrm %%SITE_PERL%%/%%PERL_ARCH%%/Algorithm/SVM
 @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Algorithm

Modified: head/devel/p5-VCP-Source-cvsbk/Makefile
==============================================================================
--- head/devel/p5-VCP-Source-cvsbk/Makefile	Sun Jan  5 08:14:25 2014	(r338750)
+++ head/devel/p5-VCP-Source-cvsbk/Makefile	Sun Jan  5 12:07:20 2014	(r338751)
@@ -17,8 +17,4 @@ RUN_DEPENDS:=	${BUILD_DEPENDS}
 USES=		perl5
 USE_PERL5=	configure
 
-MAN3=		VCP::Source::cvsbk.3 \
-		VCP::Filter::cvsbkchangeset.3
-
-NO_STAGE=	yes
 .include <bsd.port.mk>

Modified: head/devel/p5-VCP-Source-cvsbk/pkg-plist
==============================================================================
--- head/devel/p5-VCP-Source-cvsbk/pkg-plist	Sun Jan  5 08:14:25 2014	(r338750)
+++ head/devel/p5-VCP-Source-cvsbk/pkg-plist	Sun Jan  5 12:07:20 2014	(r338751)
@@ -1,6 +1,8 @@
 %%SITE_PERL%%/VCP/Source/cvsbk.pm
 %%SITE_PERL%%/VCP/Filter/cvsbkchangeset.pm
 %%SITE_PERL%%/%%PERL_ARCH%%/auto/VCP/Source/cvsbk/.packlist
+%%PERL5_MAN3%%/VCP::Source::cvsbk.3.gz
+%%PERL5_MAN3%%/VCP::Filter::cvsbkchangeset.3.gz
 @dirrmtry %%SITE_PERL%%/VCP/Source
 @dirrmtry %%SITE_PERL%%/VCP/Filter
 @dirrmtry %%SITE_PERL%%/VCP

Modified: head/graphics/p5-OpenGL/Makefile
==============================================================================
--- head/graphics/p5-OpenGL/Makefile	Sun Jan  5 08:14:25 2014	(r338750)
+++ head/graphics/p5-OpenGL/Makefile	Sun Jan  5 12:07:20 2014	(r338751)
@@ -21,11 +21,6 @@ USES=		perl5 display:install
 USE_PERL5=	configure
 USE_GL=		glut
 
-MAN3=		Array.3 \
-		OpenGL.3 \
-		Tessellation.3
-
-NO_STAGE=	yes
 post-patch:
 	@${REINPLACE_CMD} -e 's|/usr/local|${LOCALBASE}|g' ${WRKSRC}/Makefile.PL
 

Modified: head/graphics/p5-OpenGL/pkg-plist
==============================================================================
--- head/graphics/p5-OpenGL/pkg-plist	Sun Jan  5 08:14:25 2014	(r338750)
+++ head/graphics/p5-OpenGL/pkg-plist	Sun Jan  5 12:07:20 2014	(r338751)
@@ -7,5 +7,8 @@
 %%SITE_PERL%%/%%PERL_ARCH%%/auto/OpenGL/OpenGL.bs
 %%SITE_PERL%%/%%PERL_ARCH%%/auto/OpenGL/OpenGL.so
 %%SITE_PERL%%/%%PERL_ARCH%%/auto/OpenGL/autosplit.ix
+%%PERL5_MAN3%%/Array.3.gz
+%%PERL5_MAN3%%/OpenGL.3.gz
+%%PERL5_MAN3%%/Tessellation.3.gz
 @dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/OpenGL
 @dirrm %%SITE_PERL%%/%%PERL_ARCH%%/OpenGL

Modified: head/mail/p5-MIME-Fast/Makefile
==============================================================================
--- head/mail/p5-MIME-Fast/Makefile	Sun Jan  5 08:14:25 2014	(r338750)
+++ head/mail/p5-MIME-Fast/Makefile	Sun Jan  5 12:07:20 2014	(r338751)
@@ -12,14 +12,11 @@ MAINTAINER=	perl@FreeBSD.org
 COMMENT=	Create, edit, and parse MIME messages (via gmime2 C library)
 
 BUILD_DEPENDS=	p5-Scalar-List-Utils>=0:${PORTSDIR}/lang/p5-Scalar-List-Utils
-LIB_DEPENDS=	gmime-2.0.4:${PORTSDIR}/mail/gmime2
+LIB_DEPENDS=	libgmime-2.0.so:${PORTSDIR}/mail/gmime2
 RUN_DEPENDS:=	${BUILD_DEPENDS}
 
 USES=		perl5
 USE_PERL5=	configure
 CONFIGURE_ENV=	PREFIX="${PREFIX}" CCFLAGS="${CCFLAGS} ${PTHREAD_CFLAGS}"
 
-MAN3=		MIME::Fast.3
-
-NO_STAGE=	yes
 .include <bsd.port.mk>

Modified: head/mail/p5-MIME-Fast/pkg-plist
==============================================================================
--- head/mail/p5-MIME-Fast/pkg-plist	Sun Jan  5 08:14:25 2014	(r338750)
+++ head/mail/p5-MIME-Fast/pkg-plist	Sun Jan  5 12:07:20 2014	(r338751)
@@ -4,6 +4,7 @@
 %%SITE_PERL%%/%%PERL_ARCH%%/auto/MIME/Fast/Fast.bs
 %%SITE_PERL%%/%%PERL_ARCH%%/auto/MIME/Fast/Fast.so
 %%SITE_PERL%%/%%PERL_ARCH%%/auto/MIME/Fast/autosplit.ix
+%%PERL5_MAN3%%/MIME::Fast.3.gz
 @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/MIME
 @dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/MIME/Fast
 @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/MIME

Modified: head/math/p5-Algorithm-KMeans/Makefile
==============================================================================
--- head/math/p5-Algorithm-KMeans/Makefile	Sun Jan  5 08:14:25 2014	(r338750)
+++ head/math/p5-Algorithm-KMeans/Makefile	Sun Jan  5 12:07:20 2014	(r338751)
@@ -21,7 +21,4 @@ RUN_DEPENDS=	p5-Graphics-GnuplotIF>=1.4:
 USES=		perl5
 USE_PERL5=	configure
 
-MAN3=		Algorithm::KMeans.3
-
-NO_STAGE=	yes
 .include <bsd.port.mk>

Modified: head/math/p5-Algorithm-KMeans/pkg-plist
==============================================================================
--- head/math/p5-Algorithm-KMeans/pkg-plist	Sun Jan  5 08:14:25 2014	(r338750)
+++ head/math/p5-Algorithm-KMeans/pkg-plist	Sun Jan  5 12:07:20 2014	(r338751)
@@ -1,5 +1,6 @@
 %%SITE_PERL%%/Algorithm/KMeans.pm
 %%SITE_PERL%%/%%PERL_ARCH%%/auto/Algorithm/KMeans/.packlist
+%%PERL5_MAN3%%/Algorithm::KMeans.3.gz
 @dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Algorithm/KMeans
 @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Algorithm
 @dirrmtry %%SITE_PERL%%/Algorithm

Modified: head/net/p5-Jifty-Plugin-Authentication-Ldap/Makefile
==============================================================================
--- head/net/p5-Jifty-Plugin-Authentication-Ldap/Makefile	Sun Jan  5 08:14:25 2014	(r338750)
+++ head/net/p5-Jifty-Plugin-Authentication-Ldap/Makefile	Sun Jan  5 12:07:20 2014	(r338751)
@@ -19,11 +19,4 @@ RUN_DEPENDS:=	${BUILD_DEPENDS}
 USES=		perl5
 USE_PERL5=	configure
 
-MAN3=		Jifty::Plugin::Authentication::Ldap.3 \
-		Jifty::Plugin::Authentication::Ldap::Action::LDAPLogin.3 \
-		Jifty::Plugin::Authentication::Ldap::Action::LDAPLogout.3 \
-		Jifty::Plugin::Authentication::Ldap::View.3 \
-		Jifty::Plugin::Authentication::Ldap::Mixin::Model::User.3
-
-NO_STAGE=	yes
 .include <bsd.port.mk>

Modified: head/net/p5-Jifty-Plugin-Authentication-Ldap/pkg-plist
==============================================================================
--- head/net/p5-Jifty-Plugin-Authentication-Ldap/pkg-plist	Sun Jan  5 08:14:25 2014	(r338750)
+++ head/net/p5-Jifty-Plugin-Authentication-Ldap/pkg-plist	Sun Jan  5 12:07:20 2014	(r338751)
@@ -6,6 +6,11 @@
 %%SITE_PERL%%/Jifty/Plugin/Authentication/Ldap/Mixin/Model/User.pm
 %%SITE_PERL%%/%%PERL_ARCH%%/auto/Jifty/Plugin/Authentication/Ldap/.packlist
 %%SITE_PERL%%/auto/share/dist/Jifty-Plugin-Authentication-Ldap/po/jifty_plugin_authentication_ldap.pot
+%%PERL5_MAN3%%/Jifty::Plugin::Authentication::Ldap.3.gz
+%%PERL5_MAN3%%/Jifty::Plugin::Authentication::Ldap::Action::LDAPLogin.3.gz
+%%PERL5_MAN3%%/Jifty::Plugin::Authentication::Ldap::Action::LDAPLogout.3.gz
+%%PERL5_MAN3%%/Jifty::Plugin::Authentication::Ldap::View.3.gz
+%%PERL5_MAN3%%/Jifty::Plugin::Authentication::Ldap::Mixin::Model::User.3.gz
 @dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Jifty/Plugin/Authentication/Ldap
 @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Jifty/Plugin/Authentication
 @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Jifty/Plugin

Modified: head/net/p5-Parallel-Pvm/Makefile
==============================================================================
--- head/net/p5-Parallel-Pvm/Makefile	Sun Jan  5 08:14:25 2014	(r338750)
+++ head/net/p5-Parallel-Pvm/Makefile	Sun Jan  5 12:07:20 2014	(r338751)
@@ -20,9 +20,6 @@ PVM_ROOT=	${LOCALBASE}/lib/pvm
 CONFIGURE_ENV=	PVM_ROOT="${PVM_ROOT}" PVM_ARCH="${PVM_ROOT}/lib/pvmgetarch"
 CONFIGURE_ARGS=	INC="-I${LOCALBASE}/include"
 
-MAN3=		Parallel::Pvm.3
-
 NOT_FOR_ARCHS=	amd64 ia64
 
-NO_STAGE=	yes
 .include <bsd.port.mk>

Modified: head/net/p5-Parallel-Pvm/pkg-plist
==============================================================================
--- head/net/p5-Parallel-Pvm/pkg-plist	Sun Jan  5 08:14:25 2014	(r338750)
+++ head/net/p5-Parallel-Pvm/pkg-plist	Sun Jan  5 12:07:20 2014	(r338751)
@@ -5,6 +5,7 @@
 %%SITE_PERL%%/%%PERL_ARCH%%/auto/Parallel/Pvm/autosplit.ix
 %%SITE_PERL%%/%%PERL_ARCH%%/auto/Parallel/Pvm/code2symbol.al
 %%SITE_PERL%%/%%PERL_ARCH%%/auto/Parallel/Pvm/code2text.al
+%%PERL5_MAN3%%/Parallel::Pvm.3.gz
 @dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Parallel/Pvm
 @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/Parallel
 @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Parallel

Modified: head/textproc/p5-Tree-Suffix/Makefile
==============================================================================
--- head/textproc/p5-Tree-Suffix/Makefile	Sun Jan  5 08:14:25 2014	(r338750)
+++ head/textproc/p5-Tree-Suffix/Makefile	Sun Jan  5 12:07:20 2014	(r338751)
@@ -10,13 +10,10 @@ PKGNAMEPREFIX=	p5-
 MAINTAINER=	perl@FreeBSD.org
 COMMENT=	Perl interface to the libstree library
 
-LIB_DEPENDS=	stree.0:${PORTSDIR}/textproc/libstree
+LIB_DEPENDS=	libstree.so:${PORTSDIR}/textproc/libstree
 
 USES=		perl5
 USE_PERL5=	configure
 CFLAGS+=	-I${LOCALBASE}/include
 
-MAN3=		Tree::Suffix.3
-
-NO_STAGE=	yes
 .include <bsd.port.mk>

Modified: head/textproc/p5-Tree-Suffix/pkg-plist
==============================================================================
--- head/textproc/p5-Tree-Suffix/pkg-plist	Sun Jan  5 08:14:25 2014	(r338750)
+++ head/textproc/p5-Tree-Suffix/pkg-plist	Sun Jan  5 12:07:20 2014	(r338751)
@@ -2,6 +2,7 @@
 %%SITE_PERL%%/%%PERL_ARCH%%/auto/Tree/Suffix/Suffix.bs
 %%SITE_PERL%%/%%PERL_ARCH%%/auto/Tree/Suffix/.packlist
 %%SITE_PERL%%/%%PERL_ARCH%%/Tree/Suffix.pm
+%%PERL5_MAN3%%/Tree::Suffix.3.gz
 @dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Tree/Suffix
 @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Tree
 @dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/Tree



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