Date: Thu, 20 Sep 2018 14:10:52 +0000 (UTC) From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r480173 - head/biology/py-cutadapt Message-ID: <201809201410.w8KEAq33030059@repo.freebsd.org>
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Author: jwb Date: Thu Sep 20 14:10:52 2018 New Revision: 480173 URL: https://svnweb.freebsd.org/changeset/ports/480173 Log: biology/py-cutadapt: Upgrade to 1.18 Approved by: jrm (mentor) Differential Revision: https://reviews.freebsd.org/D17099 Deleted: head/biology/py-cutadapt/pkg-plist Modified: head/biology/py-cutadapt/Makefile head/biology/py-cutadapt/distinfo (contents, props changed) Modified: head/biology/py-cutadapt/Makefile ============================================================================== --- head/biology/py-cutadapt/Makefile Thu Sep 20 14:06:19 2018 (r480172) +++ head/biology/py-cutadapt/Makefile Thu Sep 20 14:10:52 2018 (r480173) @@ -1,20 +1,22 @@ # $FreeBSD$ PORTNAME= cutadapt -PORTVERSION= 1.14 +PORTVERSION= 1.18 CATEGORIES= biology python MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org -COMMENT= Finds and removes adapter sequences, primers, poly-A tails, etc +COMMENT= Trim adapters from high-throughput sequencing reads LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xopen>0:archivers/py-xopen@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xopen>=0.3.2:archivers/py-xopen@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}bz2file>=0.98:archivers/py-bz2file@${PY_FLAVOR} USES= python -USE_PYTHON= distutils py3kplist +USE_PYTHON= autoplist concurrent distutils post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/cutadapt/*.so Modified: head/biology/py-cutadapt/distinfo ============================================================================== --- head/biology/py-cutadapt/distinfo Thu Sep 20 14:06:19 2018 (r480172) +++ head/biology/py-cutadapt/distinfo Thu Sep 20 14:10:52 2018 (r480173) @@ -1,3 +1,3 @@ -TIMESTAMP = 1509552013 -SHA256 (cutadapt-1.14.tar.gz) = f32990a8b2f8b53f8f4c723ada3d256a8e8476febdd296506764cc8e83397d3d -SIZE (cutadapt-1.14.tar.gz) = 283631 +TIMESTAMP = 1536508727 +SHA256 (cutadapt-1.18.tar.gz) = 17aabf9b19d09a426d96030a83ad003c97b26dba9d45bf5570d33088fcd533f9 +SIZE (cutadapt-1.18.tar.gz) = 342050
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