Date: Mon, 20 Mar 2017 20:24:26 +0000 From: bugzilla-noreply@freebsd.org To: python@FreeBSD.org Subject: maintainer-feedback requested: [Bug 217968] math/py-numpy: Possible regression with fortran linkage Message-ID: <bug-217968-21822-nAFmQ5eYd0@https.bugs.freebsd.org/bugzilla/> In-Reply-To: <bug-217968-21822@https.bugs.freebsd.org/bugzilla/> References: <bug-217968-21822@https.bugs.freebsd.org/bugzilla/>
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Jason Bacon <bacon4000@gmail.com> has reassigned Bugzilla Automation <bugzilla@FreeBSD.org>'s request for maintainer-feedback to FreeBSD Python <python@FreeBSD.org>: Bug 217968: math/py-numpy: Possible regression with fortran linkage https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D217968 --- Description --- The following error started appearing since running pkg upgrade this mornin= g.=20 The qiime-test script had been working for the past couple weeks and there = have been no major changes to the qiime port lately. I can still build and run fortran programs using -Wl,-rpath,/usr/local/lib/gcc49. This looks to me like a numpy link error, maybe failing to use rpath to load the correct libgcc? Thanks, Jason FreeBSD unixdev.ceas bacon ~ 403: ./qiime-test qiime-tests/ Traceback (most recent call last): File "./all_tests.py", line 10, in <module> from qiime.util import (parse_command_line_parameters, get_options_look= up, File "/usr/local/lib/python2.7/site-packages/qiime/util.py", line 35, in <module> from numpy import (array, zeros, shape, vstack, ndarray, asarray, File "/usr/local/lib/python2.7/site-packages/numpy/__init__.py", line 142= , in <module> from . import add_newdocs File "/usr/local/lib/python2.7/site-packages/numpy/add_newdocs.py", line = 13, in <module> from numpy.lib import add_newdoc File "/usr/local/lib/python2.7/site-packages/numpy/lib/__init__.py", line= 8, in <module> from .type_check import * File "/usr/local/lib/python2.7/site-packages/numpy/lib/type_check.py", li= ne 11, in <module> import numpy.core.numeric as _nx File "/usr/local/lib/python2.7/site-packages/numpy/core/__init__.py", line 14, in <module> from . import multiarray ImportError: /lib/libgcc_s.so.1: version GCC_4.6.0 required by /usr/local/lib/gcc49/libgfortran.so.3 not found
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