Date: Fri, 19 May 2006 23:18:32 +0000 (UTC) From: Aaron Dalton <aaron@FreeBSD.org> To: ports-committers@FreeBSD.org, cvs-ports@FreeBSD.org, cvs-all@FreeBSD.org Subject: cvs commit: ports/biology/p5-Bio-Phylo Makefile distinfo pkg-plist Message-ID: <200605192318.k4JNIWSn065553@repoman.freebsd.org>
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aaron 2006-05-19 23:18:32 UTC
FreeBSD ports repository
Modified files:
biology/p5-Bio-Phylo Makefile distinfo pkg-plist
Log:
- Updated from 0.07 to 0.12
Approved by: tobez (implicit)
0.08 20/Feb/2006 15:14
Improved referential integrity between nodes,
taxa, and data.
Implemented Fastnexus parser
Node object silently implements Bio::Tree::NodeI
interface if BioPerl is installed
Tree object silently implements Bio::Tree::TreeI
interface if BioPerl is installed
Added convertor methods for XML and CIPRES
Implemented more Matrix methods
Implemented symbol tables in Bio::Phylo::Util::CONSTANT
Implemented visit method for listable objects
Implemented caching infrastructure for calculations
Changed object-model to inside-out arrays
Added Biodiversity measures code by Aki Mimoto
Moved constants and exceptions to Bio::Phylo::Util::*
Fixed memory leak due to circular references
Revision Changes Path
1.2 +13 -6 ports/biology/p5-Bio-Phylo/Makefile
1.2 +3 -3 ports/biology/p5-Bio-Phylo/distinfo
1.2 +9 -3 ports/biology/p5-Bio-Phylo/pkg-plist
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