Date: Wed, 24 Jun 2026 15:31:52 +0000 From: Thierry Thomas <thierry@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 5072fe56dc1d - main - science/libminc: core library and API of the MINC toolkit, split from science/minc2 Message-ID: <6a3bf868.22c96.2c0ef491@gitrepo.freebsd.org>
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The branch main has been updated by thierry: URL: https://cgit.FreeBSD.org/ports/commit/?id=5072fe56dc1dff261ea384af29b4e59a991af1da commit 5072fe56dc1dff261ea384af29b4e59a991af1da Author: Thierry Thomas <thierry@FreeBSD.org> AuthorDate: 2026-06-24 15:29:32 +0000 Commit: Thierry Thomas <thierry@FreeBSD.org> CommitDate: 2026-06-24 15:31:48 +0000 science/libminc: core library and API of the MINC toolkit, split from science/minc2 --- MOVED | 1 + science/Makefile | 3 +- science/libminc/Makefile | 27 +++++ science/libminc/distinfo | 3 + science/libminc/files/patch-CMakeLists.txt | 10 ++ science/libminc/files/patch-LIBMINCConfig.cmake.in | 10 ++ science/libminc/pkg-descr | 7 ++ science/libminc/pkg-plist | 50 +++++++++ science/minc2/Makefile | 44 -------- science/minc2/distinfo | 2 - science/minc2/files/patch-Makefile.am | 53 --------- .../patch-conversion_minctoecat_ecat__write.c | 12 -- .../patch-conversion_minctoecat_ecat__write.h | 14 --- science/minc2/files/patch-netcdf | 42 ------- .../minc2/files/patch-progs_mincdump_mincdump.c | 51 --------- .../minc2/files/patch-progs_mincdump_mincdump.h | 11 -- science/minc2/files/patch-progs_mincdump_vardata.c | 11 -- science/minc2/files/patch-progs_mincpik_mincpik.in | 38 ------- science/minc2/pkg-descr | 2 - science/minc2/pkg-plist | 124 --------------------- 20 files changed, 110 insertions(+), 405 deletions(-) diff --git a/MOVED b/MOVED index 21c4126d3db9..10862c0df551 100644 --- a/MOVED +++ b/MOVED @@ -5376,3 +5376,4 @@ sysutils/signon-plugin-oauth2@qt5||2026-06-22|Unflavorize, remove Qt5 flavor sysutils/signon-plugin-oauth2@qt6|sysutils/signon-plugin-oauth2|2026-06-22|Unflavorize net-im/libaccounts-qt@qt5||2026-06-22|Unflavorize, remove Qt5 flavor net-im/libaccounts-qt@qt6|net-im/libaccounts-qt|2026-06-22|Unflavorize +science/minc2|science/minc-tools|2026-06-24|Split into science/minc-tools and science/libminc diff --git a/science/Makefile b/science/Makefile index a7f46b4fc331..e17b968055c2 100644 --- a/science/Makefile +++ b/science/Makefile @@ -154,6 +154,7 @@ SUBDIR += libkml SUBDIR += liblinear SUBDIR += libmbd + SUBDIR += libminc SUBDIR += libmsym SUBDIR += libnegf SUBDIR += liboglappth @@ -184,7 +185,7 @@ SUBDIR += medit SUBDIR += meep SUBDIR += metaphysicl - SUBDIR += minc2 + SUBDIR += minc-tools SUBDIR += mmdb2 SUBDIR += mmg SUBDIR += mmtf-cpp diff --git a/science/libminc/Makefile b/science/libminc/Makefile new file mode 100644 index 000000000000..25c8d5332f0a --- /dev/null +++ b/science/libminc/Makefile @@ -0,0 +1,27 @@ +PORTNAME= libminc +PORTVERSION= 2.5.0 +DISTVERSIONPREFIX= release- +CATEGORIES= science biology + +MAINTAINER= ports@FreeBSD.org +COMMENT= Core library and API of the MINC toolkit +WWW= https://www.bic.mni.mcgill.ca/ServicesSoftware/MINC + +LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/COPYING + +BUILD_DEPENDS= nifticlib>0:science/nifticlib +LIB_DEPENDS= libhdf5.so:science/hdf5 \ + libnetcdf.so:science/netcdf + +USES= cmake:testing localbase +CMAKE_ON= LIBMINC_BUILD_SHARED_LIBS \ + LIBMINC_MINC1_SUPPORT \ + LIBMINC_USE_NIFTI LIBMINC_USE_SYSTEM_NIFTI + +USE_GITHUB= yes +GH_ACCOUNT= BIC-MNI + +USE_LDCONFIG= yes + +.include <bsd.port.mk> diff --git a/science/libminc/distinfo b/science/libminc/distinfo new file mode 100644 index 000000000000..fc2878cc0752 --- /dev/null +++ b/science/libminc/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1782248330 +SHA256 (BIC-MNI-libminc-release-2.5.0_GH0.tar.gz) = 57d807e86a353a93024a8849f5e21e2abea4f09f0be934e1f538bdc2b02f8885 +SIZE (BIC-MNI-libminc-release-2.5.0_GH0.tar.gz) = 823875 diff --git a/science/libminc/files/patch-CMakeLists.txt b/science/libminc/files/patch-CMakeLists.txt new file mode 100644 index 000000000000..e861050e9cd1 --- /dev/null +++ b/science/libminc/files/patch-CMakeLists.txt @@ -0,0 +1,10 @@ +--- CMakeLists.txt.orig 2026-04-24 04:00:26 UTC ++++ CMakeLists.txt +@@ -81,7 +81,6 @@ if(NOT LIBMINC_EXTERNALLY_CONFIGURED) + + # external packages + find_package(ZLIB REQUIRED) +- set(HDF5_NO_FIND_PACKAGE_CONFIG_FILE ON) + find_package(HDF5 REQUIRED COMPONENTS C ) + + if(LIBMINC_USE_NIFTI) diff --git a/science/libminc/files/patch-LIBMINCConfig.cmake.in b/science/libminc/files/patch-LIBMINCConfig.cmake.in new file mode 100644 index 000000000000..b61d87f7b8b8 --- /dev/null +++ b/science/libminc/files/patch-LIBMINCConfig.cmake.in @@ -0,0 +1,10 @@ +--- LIBMINCConfig.cmake.in.orig 2026-04-24 04:00:26 UTC ++++ LIBMINCConfig.cmake.in +@@ -33,7 +33,6 @@ find_dependency(ZLIB REQUIRED) + # ----- Resolve transitive dependencies ----- + find_dependency(ZLIB REQUIRED) + +-set(HDF5_NO_FIND_PACKAGE_CONFIG_FILE ON) + # Provide hints so the system FindHDF5 can find the same HDF5 we were built with + # (especially important on Debian/Ubuntu where the serial variant lives in + # non-standard paths like /usr/include/hdf5/serial) diff --git a/science/libminc/pkg-descr b/science/libminc/pkg-descr new file mode 100644 index 000000000000..61c88270b807 --- /dev/null +++ b/science/libminc/pkg-descr @@ -0,0 +1,7 @@ +MINC - Medical Image NetCDF or MINC isn't netCDF. + +The MINC file format is a highly flexible medical image file format built on the +HDF5 generalized data format. + +Note: previously, this port was science/mint2, but it is now split into two +parts: libminc and minc-tools. diff --git a/science/libminc/pkg-plist b/science/libminc/pkg-plist new file mode 100644 index 000000000000..41d940fa80d4 --- /dev/null +++ b/science/libminc/pkg-plist @@ -0,0 +1,50 @@ +include/ParseArgv.h +include/minc.h +include/minc2.h +include/minc2_api.h +include/minc2_defs.h +include/minc2_error.h +include/minc2_structs.h +include/minc_1_rw.h +include/minc_1_simple.h +include/minc_1_simple_rw.h +include/minc_common_defs.h +include/minc_compat.h +include/minc_config.h +include/minc_error.h +include/minc_format_convert.h +include/minc_io_4d_volume.h +include/minc_io_exceptions.h +include/minc_io_fixed_vector.h +include/minc_io_simple_volume.h +include/minc_simple.h +include/nd_loop.h +include/read_file_names.h +include/restructure.h +include/time_stamp.h +include/volume_io.h +include/volume_io/alloc.h +include/volume_io/arrays.h +include/volume_io/basic.h +include/volume_io/def_math.h +include/volume_io/files.h +include/volume_io/geom_structs.h +include/volume_io/geometry.h +include/volume_io/multidim.h +include/volume_io/progress.h +include/volume_io/string_funcs.h +include/volume_io/system_dependent.h +include/volume_io/transforms.h +include/volume_io/vol_io_prototypes.h +include/volume_io/volume.h +include/volume_io/volume_cache.h +include/voxel_loop.h +lib/cmake/FindNETCDF.cmake +lib/cmake/LIBMINC-targets-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/LIBMINC-targets.cmake +lib/cmake/LIBMINCConfig.cmake +lib/cmake/UseLIBMINC.cmake +lib/libminc2.so +lib/libminc2.so.5.3.0 +lib/libminc_io.so +lib/libminc_io.so.5.3.0 diff --git a/science/minc2/Makefile b/science/minc2/Makefile deleted file mode 100644 index 009a3b4461f1..000000000000 --- a/science/minc2/Makefile +++ /dev/null @@ -1,44 +0,0 @@ -PORTNAME= minc -PORTVERSION= 2.2.00 -DISTVERSIONPREFIX= release- -PORTREVISION= 15 -PORTEPOCH= 1 -CATEGORIES= science biology -PKGNAMESUFFIX= 2 - -MAINTAINER= ports@FreeBSD.org -COMMENT= Medical Imaging NetCDF -WWW= https://www.bic.mni.mcgill.ca/ServicesSoftware/MINC - -LICENSE= MIT -LICENSE_FILE= ${WRKSRC}/COPYING - -LIB_DEPENDS= libhdf5.so:science/hdf5 \ - libnetcdf.so:science/netcdf -RUN_DEPENDS= bash:shells/bash - -USE_GITHUB= yes -GH_ACCOUNT= BIC-MNI - -MAKE_JOBS_UNSAFE= yes - -USES= autoreconf bison gmake libtool perl5 shebangfix -SHEBANG_FILES= progs/mincview/mincview -GNU_CONFIGURE= yes -GNU_CONFIGURE_MANPREFIX=${PREFIX}/share -CONFIGURE_ARGS= --enable-shared=yes --enable-static=yes -INSTALL_TARGET= install-strip -USE_LDCONFIG= yes - -CFLAGS+= -Wno-error=return-type -CPPFLAGS+= -I${LOCALBASE}/include -LDFLAGS+= -L${LOCALBASE}/lib - -CONFLICTS= minc-1* zh-tk - -pre-patch: - @${RM} ${WRKSRC}/ac_config_aux/* - @${RM} ${WRKSRC}/progs/minccalc/gram.[ch] - @${RM} ${WRKSRC}/progs/mincgen/ncgentab.[ch] - -.include <bsd.port.mk> diff --git a/science/minc2/distinfo b/science/minc2/distinfo deleted file mode 100644 index e55a2231a484..000000000000 --- a/science/minc2/distinfo +++ /dev/null @@ -1,2 +0,0 @@ -SHA256 (BIC-MNI-minc-release-2.2.00_GH0.tar.gz) = 61789f1a52ce646c6253c38a75d3bb06a04f60f059f8efb6935308f0e7de999f -SIZE (BIC-MNI-minc-release-2.2.00_GH0.tar.gz) = 3906741 diff --git a/science/minc2/files/patch-Makefile.am b/science/minc2/files/patch-Makefile.am deleted file mode 100644 index b6f53bf7c248..000000000000 --- a/science/minc2/files/patch-Makefile.am +++ /dev/null @@ -1,53 +0,0 @@ ---- Makefile.am.orig 2012-09-24 17:35:36 UTC -+++ Makefile.am -@@ -274,28 +274,28 @@ m4_files = \ - m4/smr_WITH_BUILD_PATH.m4 - - ezMINC_files = \ -- ezminc/examples/volume_msq_dist.cpp -- ezminc/examples/CMakeLists.txt -- ezminc/examples/fuzzy_volume_similarity.cpp -- ezminc/examples/trilinear_resample.cpp -- ezminc/examples/volume_avg.cpp -- ezminc/examples/volume_gtc_similarity.cpp -- ezminc/examples/volume_similarity.cpp -- ezminc/minc_1_simple_rw.cpp -- ezminc/minc_1_simple_rw.h -- ezminc/minc_io_4d_volume.h -- ezminc/minc_io_fixed_vector.h -- ezminc/minc_io_simple_volume.h -- ezminc/tests/minc_rw_test2.cpp -- ezminc/tests/minc_rw_test_4d.cpp -- ezminc/tests/minc_rw_test_simple.cpp -- ezminc/tests/CMakeLists.txt -- ezminc/tests/ezminc_rw_test.cpp -- ezminc/tests/ezminc_stats.cpp -- ezminc/minc_1_simple.h -- ezminc/CMakeLists.txt -- ezminc/minc_1_rw.cpp -- ezminc/minc_1_rw.h -+ ezminc/examples/volume_msq_dist.cpp \ -+ ezminc/examples/CMakeLists.txt \ -+ ezminc/examples/fuzzy_volume_similarity.cpp \ -+ ezminc/examples/trilinear_resample.cpp \ -+ ezminc/examples/volume_avg.cpp \ -+ ezminc/examples/volume_gtc_similarity.cpp \ -+ ezminc/examples/volume_similarity.cpp \ -+ ezminc/minc_1_simple_rw.cpp \ -+ ezminc/minc_1_simple_rw.h \ -+ ezminc/minc_io_4d_volume.h \ -+ ezminc/minc_io_fixed_vector.h \ -+ ezminc/minc_io_simple_volume.h \ -+ ezminc/tests/minc_rw_test2.cpp \ -+ ezminc/tests/minc_rw_test_4d.cpp \ -+ ezminc/tests/minc_rw_test_simple.cpp \ -+ ezminc/tests/CMakeLists.txt \ -+ ezminc/tests/ezminc_rw_test.cpp \ -+ ezminc/tests/ezminc_stats.cpp \ -+ ezminc/minc_1_simple.h \ -+ ezminc/CMakeLists.txt \ -+ ezminc/minc_1_rw.cpp \ -+ ezminc/minc_1_rw.h \ - ezminc/minc_io_exceptions.h - - voxeltoworld_SOURCES = progs/coordinates/voxeltoworld.c diff --git a/science/minc2/files/patch-conversion_minctoecat_ecat__write.c b/science/minc2/files/patch-conversion_minctoecat_ecat__write.c deleted file mode 100644 index 4369323f90d8..000000000000 --- a/science/minc2/files/patch-conversion_minctoecat_ecat__write.c +++ /dev/null @@ -1,12 +0,0 @@ ---- conversion/minctoecat/ecat_write.c.orig 2023-04-11 00:36:34 UTC -+++ conversion/minctoecat/ecat_write.c -@@ -11,6 +11,9 @@ - #define ERROR -1 - #define V7 70 - -+MatrixErrorCode matrix_errno; -+ -+char matrix_errtxt[132]; - - char* dstypecode[NumDataSetTypes] = - { "u","s","i","a","n","pm","v8","v","p8","p","i8","S","S8","N", "FS"}; diff --git a/science/minc2/files/patch-conversion_minctoecat_ecat__write.h b/science/minc2/files/patch-conversion_minctoecat_ecat__write.h deleted file mode 100644 index 902eafc23a84..000000000000 --- a/science/minc2/files/patch-conversion_minctoecat_ecat__write.h +++ /dev/null @@ -1,14 +0,0 @@ ---- conversion/minctoecat/ecat_write.h.orig 2023-04-11 00:36:27 UTC -+++ conversion/minctoecat/ecat_write.h -@@ -39,9 +39,9 @@ typedef enum { - BitData - } MatrixDataType; - --MatrixErrorCode matrix_errno; -+extern MatrixErrorCode matrix_errno; - --char matrix_errtxt[132]; -+extern char matrix_errtxt[132]; - - typedef struct XMAIN_HEAD { - char magic_number[14]; diff --git a/science/minc2/files/patch-netcdf b/science/minc2/files/patch-netcdf deleted file mode 100644 index 139ba5217a0c..000000000000 --- a/science/minc2/files/patch-netcdf +++ /dev/null @@ -1,42 +0,0 @@ ---- progs/mincdump/mincdump.c.orig 2012-09-24 17:35:36 UTC -+++ progs/mincdump/mincdump.c -@@ -494,17 +494,17 @@ do_ncdump(char *path, struct fspec* specp) - /* get _FillValue attribute */ - old_nc_opts = ncopts; - ncopts = 0; -- nc_status = ncattinq(ncid,varid,_FillValue,&att.type,&att.len); -+ nc_status = ncattinq(ncid,varid,NC_FillValue,&att.type,&att.len); - ncopts = old_nc_opts; - if(nc_status == NC_NOERR && - att.type == var.type && att.len == 1) { - if(var.type == NC_CHAR) { - char fillc; -- ncattget(ncid, varid, _FillValue, &fillc ); -+ ncattget(ncid, varid, NC_FillValue, &fillc ); - var.fillval = fillc; - } - else { -- ncattget(ncid, varid, _FillValue, &var.fillval); -+ ncattget(ncid, varid, NC_FillValue, &var.fillval); - } - } else { - switch (var.type) { ---- progs/mincgen/ncgentab.y.orig 2012-09-24 17:35:36 UTC -+++ progs/mincgen/ncgentab.y -@@ -288,14 +288,14 @@ attdecl: att - /* shrink space down to what was really needed */ - att_space = erealloc(att_space, valnum*nctypesize(valtype)); - atts[natts].val = att_space; -- if (STREQ(atts[natts].name, _FillValue) && -+ if (STREQ(atts[natts].name, NC_FillValue) && - atts[natts].var != NC_GLOBAL) { - nc_putfill(atts[natts].type, - atts[natts].val, - &vars[atts[natts].var].fill_value); - if(atts[natts].type != vars[atts[natts].var].type) { - derror("variable %s: %s type mismatch", -- vars[atts[natts].var].name, _FillValue); -+ vars[atts[natts].var].name, NC_FillValue); - } - } - natts++; diff --git a/science/minc2/files/patch-progs_mincdump_mincdump.c b/science/minc2/files/patch-progs_mincdump_mincdump.c deleted file mode 100644 index dd09a0708d57..000000000000 --- a/science/minc2/files/patch-progs_mincdump_mincdump.c +++ /dev/null @@ -1,51 +0,0 @@ ---- progs/mincdump/mincdump.c.orig 2012-09-24 17:35:36 UTC -+++ progs/mincdump/mincdump.c -@@ -553,7 +553,7 @@ do_ncdump(char *path, struct fspec* spec - static void - set_brief(struct fspec * fspecp, char *key, char *optarg) - { -- fspecp->brief_data_cmnts = true; -+ fspecp->brief_data_cmnts = my_true; - switch (tolower(optarg[0])) { - case 'c': - fspecp->data_lang = LANG_C; -@@ -569,7 +569,7 @@ set_brief(struct fspec * fspecp, char *k - static void - set_full(struct fspec * fspecp, char *key, char *optarg) - { -- fspecp->full_data_cmnts = true; -+ fspecp->full_data_cmnts = my_true; - switch (tolower(optarg[0])) { - case 'c': - fspecp->data_lang = LANG_C; -@@ -688,10 +688,10 @@ main(int argc, char *argv[]) - static struct fspec fspec = /* defaults, overridden on command line */ - { - 0, /* construct netcdf name from file name */ -- false, /* print header info only, no data? */ -- false, /* just print coord vars? */ -- false, /* brief comments in data section? */ -- false, /* full annotations in data section? */ -+ my_false, /* print header info only, no data? */ -+ my_false, /* just print coord vars? */ -+ my_false, /* brief comments in data section? */ -+ my_false, /* full annotations in data section? */ - LANG_C, /* language conventions for indices */ - 0, /* if -v specified, number of variables */ - 0 /* if -v specified, list of variable names */ -@@ -701,13 +701,13 @@ main(int argc, char *argv[]) - static ArgvInfo argTable[] = { - {"-b", ARGV_FUNC, (char *) set_brief, (char *) &fspec, - "Brief annotations for C or Fortran indices in data" }, -- {"-c", ARGV_CONSTANT, (char *) true, (char *) &fspec.coord_vals, -+ {"-c", ARGV_CONSTANT, (char *) my_true, (char *) &fspec.coord_vals, - "Coordinate variable data and header information" }, - {"-d", ARGV_FUNC, (char *) set_sigdigs, (char *) NULL, - "Obsolete option for setting significant digits" }, - {"-f", ARGV_FUNC, (char *) set_full, (char *) &fspec, - "Full annotations for C or Fortran indices in data" }, -- {"-h", ARGV_CONSTANT, (char *) true, (char *) &fspec.header_only, -+ {"-h", ARGV_CONSTANT, (char *) my_true, (char *) &fspec.header_only, - "Header information only, no data" }, - {"-l", ARGV_INT, (char *) 1, (char *) &max_len, - "Line length maximum in data section (default 80)" }, diff --git a/science/minc2/files/patch-progs_mincdump_mincdump.h b/science/minc2/files/patch-progs_mincdump_mincdump.h deleted file mode 100644 index ee9704df9d93..000000000000 --- a/science/minc2/files/patch-progs_mincdump_mincdump.h +++ /dev/null @@ -1,11 +0,0 @@ ---- progs/mincdump/mincdump.h.orig 2012-09-24 17:35:36 UTC -+++ progs/mincdump/mincdump.h -@@ -15,7 +15,7 @@ - #define Printf (void) printf - - typedef int boolean; --enum {false=0, true=1}; -+enum {my_false=0, my_true=1}; - - struct ncdim { /* dimension */ - char name[NC_MAX_NAME]; diff --git a/science/minc2/files/patch-progs_mincdump_vardata.c b/science/minc2/files/patch-progs_mincdump_vardata.c deleted file mode 100644 index b22617aa7391..000000000000 --- a/science/minc2/files/patch-progs_mincdump_vardata.c +++ /dev/null @@ -1,11 +0,0 @@ ---- progs/mincdump/vardata.c.orig 2012-09-24 17:35:36 UTC -+++ progs/mincdump/vardata.c -@@ -775,7 +775,7 @@ vardata( - - if (vrank > 0) { - corsav = cor[vrank-1]; -- if (fsp->brief_data_cmnts != false -+ if (fsp->brief_data_cmnts != my_false - && vrank > 1 - && left > 0) { /* print brief comment with indices range */ - Printf("// %s(",vp->name); diff --git a/science/minc2/files/patch-progs_mincpik_mincpik.in b/science/minc2/files/patch-progs_mincpik_mincpik.in deleted file mode 100644 index 40bdb5d54eb5..000000000000 --- a/science/minc2/files/patch-progs_mincpik_mincpik.in +++ /dev/null @@ -1,38 +0,0 @@ ---- progs/mincpik/mincpik.in.orig 2012-09-24 17:35:36 UTC -+++ progs/mincpik/mincpik.in -@@ -576,8 +576,11 @@ font point size for the title - - create an annotated bar to match the image (use height of the output image) - -+=back - - =head3 Image range and lookup table options -+ -+=over - - =item B<--range> - -@@ -595,8 +598,11 @@ automatically determine image range usin - - arguments to pass to minclookup - -+=back - - =head3 Slicing options -+ -+=over - - =item B<-s> B<--slice> - -@@ -614,8 +620,11 @@ get a coronal (y) slice - - get a sagital (x) slice - -+=back - - =head3 Triplanar options -+ -+=over - - =item B<-t> B<--triplanar> - diff --git a/science/minc2/pkg-descr b/science/minc2/pkg-descr deleted file mode 100644 index 415891c58780..000000000000 --- a/science/minc2/pkg-descr +++ /dev/null @@ -1,2 +0,0 @@ -MINC (Medical Imaging NetCDF) is a medical imaging data format and an -associated set of tools and libraries. diff --git a/science/minc2/pkg-plist b/science/minc2/pkg-plist deleted file mode 100644 index 7b9be208166e..000000000000 --- a/science/minc2/pkg-plist +++ /dev/null @@ -1,124 +0,0 @@ -bin/dcm2mnc -bin/ecattominc -bin/invert_raw_image -bin/minc_modify_header -bin/mincaverage -bin/mincblob -bin/minccalc -bin/minccmp -bin/minccomplete -bin/mincconcat -bin/mincconvert -bin/minccopy -bin/mincdiff -bin/mincdump -bin/mincedit -bin/mincexpand -bin/mincextract -bin/mincgen -bin/mincheader -bin/minchistory -bin/mincinfo -bin/minclookup -bin/mincmakescalar -bin/mincmakevector -bin/mincmath -bin/mincmorph -bin/mincpik -bin/mincresample -bin/mincreshape -bin/mincsample -bin/mincstats -bin/minctoecat -bin/minctoraw -bin/mincview -bin/mincwindow -bin/mnc2nii -bin/nii2mnc -bin/rawtominc -bin/transformtags -bin/upet2mnc -bin/vff2mnc -bin/voxeltoworld -bin/worldtovoxel -bin/xfm2def -bin/xfmconcat -bin/xfmflip -bin/xfminvert -include/ParseArgv.h -include/minc.h -include/minc2.h -include/minc_compat.h -include/minc_simple.h -include/nd_loop.h -include/time_stamp.h -include/volume_io.h -include/volume_io/alloc.h -include/volume_io/arrays.h -include/volume_io/basic.h -include/volume_io/def_math.h -include/volume_io/files.h -include/volume_io/geom_structs.h -include/volume_io/geometry.h -include/volume_io/internal_volume_io.h -include/volume_io/multidim.h -include/volume_io/progress.h -include/volume_io/string_funcs.h -include/volume_io/system_dependent.h -include/volume_io/transforms.h -include/volume_io/vol_io_prototypes.h -include/volume_io/volume.h -include/volume_io/volume_cache.h -include/voxel_loop.h -lib/libminc2.a -lib/libminc2.so -lib/libminc2.so.3 -lib/libminc2.so.3.0.0 -lib/libvolume_io2.a -lib/libvolume_io2.so -lib/libvolume_io2.so.3 -lib/libvolume_io2.so.3.0.0 -share/man/man1/dcm2mnc.1.gz -share/man/man1/ecattominc.1.gz -share/man/man1/invert_raw_image.1.gz -share/man/man1/minc_modify_header.1.gz -share/man/man1/mincaverage.1.gz -share/man/man1/mincblob.1.gz -share/man/man1/minccalc.1.gz -share/man/man1/minccmp.1.gz -share/man/man1/minccomplete.1.gz -share/man/man1/mincconcat.1.gz -share/man/man1/mincconvert.1.gz -share/man/man1/minccopy.1.gz -share/man/man1/mincdiff.1.gz -share/man/man1/mincedit.1.gz -share/man/man1/mincexpand.1.gz -share/man/man1/mincextract.1.gz -share/man/man1/mincgen.1.gz -share/man/man1/mincheader.1.gz -share/man/man1/minchistory.1.gz -share/man/man1/mincinfo.1.gz -share/man/man1/minclookup.1.gz -share/man/man1/mincmakescalar.1.gz -share/man/man1/mincmakevector.1.gz -share/man/man1/mincmath.1.gz -share/man/man1/mincpik.1.gz -share/man/man1/mincresample.1.gz -share/man/man1/mincreshape.1.gz -share/man/man1/mincstats.1.gz -share/man/man1/minctoecat.1.gz -share/man/man1/minctoraw.1.gz -share/man/man1/mincview.1.gz -share/man/man1/mincwindow.1.gz -share/man/man1/mnc2nii.1.gz -share/man/man1/nii2mnc.1.gz -share/man/man1/rawtominc.1.gz -share/man/man1/transformtags.1.gz -share/man/man1/upet2mnc.1.gz -share/man/man1/vff2mnc.1.gz -share/man/man1/voxeltoworld.1.gz -share/man/man1/xfm2def.1.gz -share/man/man1/xfmconcat.1.gz -share/man/man1/xfmflip.1.gz -share/man/man1/xfminvert.1.gz -share/man/man3/ParseArgv.3.gzhome | help
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