Date: Mon, 12 Jul 2021 13:37:51 GMT From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 5fa07128ec66 - main - htslib: Update to 1.13 Message-ID: <202107121337.16CDbp7P035605@gitrepo.freebsd.org>
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The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=5fa07128ec66ff71ca0348a324e2777eb00ee89a commit 5fa07128ec66ff71ca0348a324e2777eb00ee89a Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2021-07-12 13:16:45 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2021-07-12 13:16:45 +0000 htslib: Update to 1.13 Numerous enhancements and bug fixes Changes: https://github.com/samtools/htslib/releases/tag/1.13 --- biology/htslib/Makefile | 2 +- biology/htslib/distinfo | 6 +++--- biology/htslib/files/patch-hts.c | 10 ---------- 3 files changed, 4 insertions(+), 14 deletions(-) diff --git a/biology/htslib/Makefile b/biology/htslib/Makefile index 85e509a6435b..d326ae2b0b65 100644 --- a/biology/htslib/Makefile +++ b/biology/htslib/Makefile @@ -1,7 +1,7 @@ # Created by: Reed A. Cartwright <cartwright@asu.edu> PORTNAME= htslib -DISTVERSION= 1.12 +DISTVERSION= 1.13 CATEGORIES= biology devel # Github generated distfiles are incomplete, so use custom tarball MASTER_SITES= https://github.com/samtools/htslib/releases/download/${DISTVERSION}/ diff --git a/biology/htslib/distinfo b/biology/htslib/distinfo index 2bc449b5deb6..dc4bf1b4ea09 100644 --- a/biology/htslib/distinfo +++ b/biology/htslib/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1616112272 -SHA256 (htslib-1.12.tar.bz2) = 2280141b46e953ba4ae01b98335a84f8e6ccbdb6d5cdbab7f70ee4f7e3b6f4ca -SIZE (htslib-1.12.tar.bz2) = 4094458 +TIMESTAMP = 1626039683 +SHA256 (htslib-1.13.tar.bz2) = f2407df9f97f0bb6b07656579e41a1ca5100464067b6b21bf962a2ea4b0efd65 +SIZE (htslib-1.13.tar.bz2) = 4226834 diff --git a/biology/htslib/files/patch-hts.c b/biology/htslib/files/patch-hts.c deleted file mode 100644 index d18904348c86..000000000000 --- a/biology/htslib/files/patch-hts.c +++ /dev/null @@ -1,10 +0,0 @@ ---- hts.c.orig 2020-10-18 00:49:42 UTC -+++ hts.c -@@ -39,6 +39,7 @@ DEALINGS IN THE SOFTWARE. */ - #include <time.h> - #include <sys/stat.h> - #include <assert.h> -+#include <unistd.h> // R_OK - - #include "htslib/hts.h" - #include "htslib/bgzf.h"
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